BAC Information

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BAC

Clone NameB6Ng01-317H21
Chromosome11 (Build37)4 (Build37)
Map Location 57,539,685 - 57,540,496154,876,351 - 154,877,016
singlet/doubletsingletsinglet
Overlap geneGalnt10
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3
Downstream geneSap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317H21.bB6Ng01-317H21.g
ACCGA107623GA107624
length813333
definitionB6Ng01-317H21.b B6Ng01-317H21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,539,685 - 57,540,496)(154,876,351 - 154,877,016)
sequence
gaattcaaacccaggtcgtctggcttgctcagcagtcacttcccccactg
ggctctctccagctcactcctgtgcctccatgcagattaactgtcctgaa
gcactggaggccatcagccagcagtgtcctcagaagccctgaaaggtgac
tctgatgcagacagagggtagaataggaaaccacacaggcaggaagcctc
gcttggaagacaggctgtccccccgggaccagaccctttgcatcaaactc
ttacacggaggagacagacgaggaacccagggtgcttgcctgttggactt
actgtttcatgatgtagaatcttctgctgacatacaagagtgttgttcag
ccacgctgatatttccagcttcagatcagtgagctgacaatgtgtgttac
cagaccaagcctgtgcctgacaccaggagcacctatggtcgtaactgtaa
aaatcttactccagtggtcccaaccgcccaccatcctgagctcttcggaa
ggagcatagcgactcatcatcgactctcaatattctcctggtgtgggcct
tcaactatctgtcctcctgcctcagcctcccgaatagcagggatgacagg
cctttgtcatcaggcccagctcatgtaactcactaagtgctaccctgact
taaggaggaaatagattacatgagggatatttttatatgattataaaata
agtaaatcctcaactgaatagtccaaagttagaaacggtgtctgcctggt
ttgcttacttcctttttctttttttttttaaatttcgtgtgtgtgtgtgt
gtgtgtgtgtgtg
aaacaactcacaaaacccacaaataacctgattttcaaaatggaggactg
gaaagatggcttcagttgttaggagcacttgtacctcatgcagaggagca
gagtttggttcttggcacctacattcggttgtttacaattgcctgtaaaa
actccccgaagccgggcgtgggggtgcacgcctttaatcccagcacttgg
gaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaga
gtgagctccaggacagccagggctacacagagaaaccctgtctcaaaaaa
gaagaagaagaagaaaaagaaggaggaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_57539685_57540496
seq2: B6Ng01-317H21.b_46_858

seq1  GAATTCAAACCCAGGTCGTCTGGCTTGCTCAGCAGTCACTTCCCCCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCCAGGTCGTCTGGCTTGCTCAGCAGTCACTTCCCCCACTG  50

seq1  GGCTCTCTCCAGCTCACTCCTGTGCCTCCATGCAGATTAACTGTCCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTCCAGCTCACTCCTGTGCCTCCATGCAGATTAACTGTCCTGAA  100

seq1  GCACTGGAGGCCATCAGCCAGCAGTGTCCTCAGAAGCCCTGAAAGGTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGAGGCCATCAGCCAGCAGTGTCCTCAGAAGCCCTGAAAGGTGAC  150

seq1  TCTGATGCAGACAGAGGGTAGAATAGGAAACCACACAGGCAGGAAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCAGACAGAGGGTAGAATAGGAAACCACACAGGCAGGAAGCCTC  200

seq1  GCTTGGAAGACAGGCTGTCCCCCCGGGACCAGACCCTTTGCATCAAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAAGACAGGCTGTCCCCCCGGGACCAGACCCTTTGCATCAAACTC  250

seq1  TTACACGGAGGAGACAGACGAGGAACCCAGGGTGCTTGCCTGTTGGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACGGAGGAGACAGACGAGGAACCCAGGGTGCTTGCCTGTTGGACTT  300

seq1  ACTGTTTCATGATGTAGAATCTTCTGCTGACATACAAGAGTGTTGTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCATGATGTAGAATCTTCTGCTGACATACAAGAGTGTTGTTCAG  350

seq1  CCACGCTGATATTTCCAGCTTCAGATCAGTGAGCTGACAATGTGTGTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCTGATATTTCCAGCTTCAGATCAGTGAGCTGACAATGTGTGTTAC  400

seq1  CAGACCAAGCCTGTGCCTGACACCAGGAGCACCTATGGTCGTAACTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAAGCCTGTGCCTGACACCAGGAGCACCTATGGTCGTAACTGTAA  450

seq1  AAATCTTACTCCAGTGGTCCCAACCGCCCACCATCCTGAGCTCTTCGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTACTCCAGTGGTCCCAACCGCCCACCATCCTGAGCTCTTCGGAA  500

seq1  GGAGCATAGCGACTCATCATCGACTCTCAATATTCTCCTGGTGTGGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATAGCGACTCATCATCGACTCTCAATATTCTCCTGGTGTGGGCCT  550

seq1  TCAACTATCTGTCCTCCTGCCTCAGCCTCCCGAATAGCAGGGATGACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTATCTGTCCTCCTGCCTCAGCCTCCCGAATAGCAGGGATGACAGG  600

seq1  CCTTTGTCATCAGGCCCAGCTCATGTAACTCACTAAGTGCTACCCTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCATCAGGCCCAGCTCATGTAACTCACTAAGTGCTACCCTGACT  650

seq1  TAAGGAGGAAATAGATTACATGAGGGATATTTTTATATGATTATAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGGAAATAGATTACATGAGGGATATTTTTATATGATTATAAAATA  700

seq1  AGTAAATCCTCAACTGAATAGTCCAAAGTTAGAAACGGTGTCTGCCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATCCTCAACTGAATAGTCCAAAGTTAGAAACGGTGTCTGCCTGGT  750

seq1  TTGCTTACTTCCTTTTTC-TTTTTTTTTTAAATTTCGTGTGTGTGTGTGT  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGCTTACTTCCTTTTTCTTTTTTTTTTTAAATTTCGTGTGTGTGTGTGT  800

seq1  GTGTGTGTGTGTG  812
      |||||||||||||
seq2  GTGTGTGTGTGTG  813

seq1: chr4_154876351_154877016
seq2: B6Ng01-317H21.g_232_405 (reverse)

seq1  TCCTCCTCCTCCTTCTTATAAGGCAGGTGAAGCTTTTATTTCACTGATAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTCCACAGGTTGGCGGGTGATCCCTAAAAGGCCACCTCAGGGCCCACCTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCCATCTCCCTGGCCTTGGGCTACCCGTGCTTCCTTCAGTGCCCTCCGCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTCCTTTGGAGCAGTCGCTGCTCACGTTCAAATTCCTTCATGTGCTTC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ACGTAGTCCAGGTGCTCGCAGTAGTCCCAGCTGTGCTGCTCACGCTTGCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCAGGAACCTGGCAAGCTGTCTCTGTTGCATTTCAGCAGCTGGGTAGG  300
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTGGGCACAGTAGTCACGTCGCTGCAGTGTCACCTGGGCATCCATTAT  350
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTTGTTGTGTGGCTACCGTCACTCGCTCCTTGCGCTTCGGGAAGCCGA  400
                                                        
seq2  --------------------------------------------------  0

seq1  GGTCCGTTGGGAAGCTGGGCGTCTTCTCCAGGTCAGGCTCCACCGAGGCA  450
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCACAGCACCCGGTCAGGGGTGCCCCCGTGGGTACTCTGTCTTACCCT  500
                                        | |||   ||   |||
seq2  ----------------------------------TCCTC---CTCCTCCT  13

seq1  TCTTCTTCTTCTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTC--  548
      |||| |||||||| || ||        ||||| |||||||||||||||  
seq2  TCTTTTTCTTCTTCTTCTT-------CTTTTTTGAGACAGGGTTTCTCTG  56

seq1  TCTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAA  598
      | ||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  TGTAGCCCTGGCTGTCCTGGAGCTCACTCTGTAGACCAGGCTGGCCTCGA  106

seq1  ACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGT  156

seq1  GCGCCACCACGCCCGGCT  666
      || || ||||||||||||
seq2  GCACCCCCACGCCCGGCT  174