BAC Information

Click to search

BAC

Clone NameB6Ng01-317L16
Chromosome11 (Build37)
Map Location 36,252,912 - 36,392,259
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneSlit3, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317L16.bB6Ng01-317L16.g
ACCGA107801GA107802
length497703
definitionB6Ng01-317L16.b B6Ng01-317L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,252,912 - 36,253,414)(36,391,563 - 36,392,259)
sequence
attgagttagacttgggtatcccaggttggggactttcttctggtcctaa
gcatccaggaagagagcacagaatgtgaaggctggatgagaactgctacc
ttttaccgtggatgagtctcaataccaagcccatgctctcctccccatca
atatttcatgttctcagagtcataagaaaacacatctgttgccttcctgc
atcgtaatgtgtgggatggagcaaagattattacagagcaggttcgggaa
tttaaaaattcatcaccttctcaatttagaaagctggtatgtggttagga
ctcatgaaggctcaacaagcttgaaatgaccaaggggccaggccttgttc
ctgagaaatctgtgatgtgcgggaaatcagatgcagtgagaggtgggagg
tggtcagcagaccgaggcggaaggtgaaggccacaagtccctggtgtact
ctacacagaaggtttgctgtggtgtgtgtgtgtgtgtgtgtgtgtgt

gaattctctatttcactctcacaaaaccgatgcacaaaagtaaaccttca
acttagagccccttccaccgcactgctgtgctgtccaaggaacggcaggg
aaagaagaaccaggtcacccagtagatgtaagttctctgacaataccaag
taaacccaatgccaataagatataatgggatttttaaaagcgtgttttat
tctatgagattggcatggtttattaatggcatgtgcctgttttgaatgag
aaagagagagcatctcgtaccttgctgtttggtgtgctacacgaagactt
ttgcatgcttgctgacatttaaataactctaaggatgtagagtttgatgg
tagattaggatttgcatcctaatttagattaggatttccagagaggaatc
tgtgttctctcagcagtggtcctgttcttctactagcaatctttgacttc
gaaagtcacaggcacccaacgtgcgtctctacactgtgtgtctgctctgc
accttagagggccatgtctgacggatgcactacttgctatgctcagggat
caccaagtctgccctttagtcaaggcgtctctggaaccttgggaagacag
cacatgttttgcagttgtttaggacattttcttgactatacagtttctat
gactttgtgttgagaggttggcctagtggctttcatggtgggaaggggaa
att
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_36252912_36253414
seq2: B6Ng01-317L16.b_48_550

seq1  GAATTCATTGAGTTAGACTTGGGTATCCCAGGTTGGGGACTTTCTTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGTTAGACTTGGGTATCCCAGGTTGGGGACTTTCTTCTGG  50

seq1  TCCTAAGCATCCAGGAAGAGAGCACAGAATGTGAAGGCTGGATGAGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGCATCCAGGAAGAGAGCACAGAATGTGAAGGCTGGATGAGAACT  100

seq1  GCTACCTTTTACCGTGGATGAGTCTCAATACCAAGCCCATGCTCTCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTTTACCGTGGATGAGTCTCAATACCAAGCCCATGCTCTCCTCC  150

seq1  CCATCAATATTTCATGTTCTCAGAGTCATAAGAAAACACATCTGTTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATATTTCATGTTCTCAGAGTCATAAGAAAACACATCTGTTGCCT  200

seq1  TCCTGCATCGTAATGTGTGGGATGGAGCAAAGATTATTACAGAGCAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATCGTAATGTGTGGGATGGAGCAAAGATTATTACAGAGCAGGTT  250

seq1  CGGGAATTTAAAAATTCATCACCTTCTCAATTTAGAAAGCTGGTATGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAATTTAAAAATTCATCACCTTCTCAATTTAGAAAGCTGGTATGTGG  300

seq1  TTAGGACTCATGAAGGCTCAACAAGCTTGAAATGACCAAGGGGCCAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACTCATGAAGGCTCAACAAGCTTGAAATGACCAAGGGGCCAGGCC  350

seq1  TTGTTCCTGAGAAATCTGTGATGTGCGGGAAATCAGATGCAGTGAGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTGAGAAATCTGTGATGTGCGGGAAATCAGATGCAGTGAGAGGT  400

seq1  GGGAGGTGGTCAGCAGACCGAGGCGGAAGGTGAAGGCCACAAGTCCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGGTCAGCAGACCGAGGCGGAAGGTGAAGGCCACAAGTCCCTGG  450

seq1  TGTACTCTACACAGAAGGTTTGCTGTGGTGTGTGTGTGTGTGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTACACAGAAGGTTTGCTGTGGTGTGTGTGTGTGTGTGTGTGTG  500

seq1  TGT  503
      |||
seq2  TGT  503


seq1: chr11_36391563_36392259
seq2: B6Ng01-317L16.g_66_767 (reverse)

seq1  ATTTCCCCTTCCCACCATG-AAGCCACTAGGCC-ACCTCTC-ACACAAAG  47
      ||||||||||||||||||| ||||||||||||| ||||||| ||||||||
seq2  ATTTCCCCTTCCCACCATGAAAGCCACTAGGCCAACCTCTCAACACAAAG  50

seq1  TCATAG-AACTGTATAGTCAAGAAAATGTCCTAAACAACTGC-AAACATG  95
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  TCATAGAAACTGTATAGTCAAGAAAATGTCCTAAACAACTGCAAAACATG  100

seq1  TGCTGTCTTCCCAAGGTTCCAGAGACGCCTTGACTAAAGGGCAGACTTGG  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTTCCCAAGGTTCCAGAGACGCCTTGACTAAAGGGCAGACTTGG  150

seq1  TGATCCCTGAGCATAGCAAGTAGTGCATCCGTCAGACATGGCCCTCTAAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTGAGCATAGCAAGTAGTGCATCCGTCAGACATGGCCCTCTAAG  200

seq1  GTGCAGAGCAGACACACAGTGTAGAGACGCACGTTGGGTGCCTGTGACTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGCAGACACACAGTGTAGAGACGCACGTTGGGTGCCTGTGACTT  250

seq1  TCGAAGTCAAAGATTGCTAGTAGAAGAACAGGACCACTGCTGAGAGAACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGTCAAAGATTGCTAGTAGAAGAACAGGACCACTGCTGAGAGAACA  300

seq1  CAGATTCCTCTCTGGAAATCCTAATCTAAATTAGGATGCAAATCCTAATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCTCTCTGGAAATCCTAATCTAAATTAGGATGCAAATCCTAATC  350

seq1  TACCATCAAACTCTACATCCTTAGAGTTATTTAAATGTCAGCAAGCATGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCAAACTCTACATCCTTAGAGTTATTTAAATGTCAGCAAGCATGC  400

seq1  AAAAGTCTTCGTGTAGCACACCAAACAGCAAGGTACGAGATGCTCTCTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTTCGTGTAGCACACCAAACAGCAAGGTACGAGATGCTCTCTCT  450

seq1  TTCTCATTCAAAACAGGCACATGCCATTAATAAACCATGCCAATCTCATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTCAAAACAGGCACATGCCATTAATAAACCATGCCAATCTCATA  500

seq1  GAATAAAACACGCTTTTAAAAATCCCATTATATCTTATTGGCATTGGGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAACACGCTTTTAAAAATCCCATTATATCTTATTGGCATTGGGTT  550

seq1  TACTTGGTATTGTCAGAGAACTTACATCTACTGGGTGACCTGGTTCTTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGTATTGTCAGAGAACTTACATCTACTGGGTGACCTGGTTCTTCT  600

seq1  TTCCCTGCCGTTCCTTGGACAGCACAGCAGTGCGGTGGAAGGGGCTCTAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCCGTTCCTTGGACAGCACAGCAGTGCGGTGGAAGGGGCTCTAA  650

seq1  GTTGAAGGTTTACTTTTGTGCATCGGTTTTGTGAGAGTGAAATAGAGAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGGTTTACTTTTGTGCATCGGTTTTGTGAGAGTGAAATAGAGAAT  700

seq1  TC  697
      ||
seq2  TC  702


| Home | SequenceCutter | Blast | Download |