BAC Information

Click to search

BAC

Clone NameB6Ng01-317N03
Chromosome11 (Build37)
Map Location 79,620,354 - 79,763,667
singlet/doubletdoublet
Overlap geneLOC432584, Utp6
Upstream gene1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185
Downstream geneENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317N03.bB6Ng01-317N03.g
ACCGA107871GA107872
length1,1591,131
definitionB6Ng01-317N03.b B6Ng01-317N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,762,515 - 79,763,667)(79,620,354 - 79,621,495)
sequence
gaattcttcagcgttttggtagagagttccgttgtgttttttctctgcct
ctgttagaagaatttaagagaccaggctctgcagggctcatggaggtgtc
tgtggccacagataactactgatgtgatttggagagctataataatttta
aagataatatttgttggggttttgtttgtttatttttaagaagggtaggc
tggccttgaatgtgtgggaatcattctgcctcaggcttctgaatgctgtg
ccaccacgcccagctaaaagttaatatctgtaaatgatgcctgaaacatt
ctgcaatctaattgatatataacaactttggtccattgattagtctattt
gttaagctattctggaacgcctgttaggaaattactcttttttttttttt
ttaaattacatatttaccattatgattgttactgagtattttcttttttt
aaattttattagatatgttctttatatacatttcaaatgctatcccgaaa
gttccctaatccctccccccgccctgctgtcctacccacccactcctgct
tcttggcactggaattcccctgtactggggcatataaagtttgcaatacc
aaggggcctctcctcccagtggtggccgccatctgttaggaatttaataa
tcctaatataatagtagattctatcataggataggttcgctgtcactttg
atattttgccctattgtctcttgatacacaccattctgaaggcctctgtt
gttctttttatatacatttcttacttaaatgttccatcaatgacactccc
acctcttgatgcaaaatgaaaaaaaaaaacttttagaagtaaacataggc
cttccaataaagaaacaagctatgccacagtgcagaacagaatagtactg
tatttacaagaaaccaatgcagcaaaacatgaacacttagcattatgttt
aacatttattcctctgaagaaataacttcttgtgttactgcagctgtaaa
agggtatccctgtgcccttttgtgaccatagaattctgttattttcgaat
agttttctatcatggggcagtgcaggtaactgtcattttcagcctcaaag
cctctgcacacggatgaacccaactcactggaattatgtggcgcgcgcaa
gaaattaga
gaattccacttcttcctcctcctcctctcttaaagaatggaatgggaagg
ctgagcccctagactccagccccacagtactcagagagctcactactgtc
cccagcgggactcatcagccttcatcagtcaaaccctgccagcaaccagt
ggctcatggactccccaggctgccagatctaagctcacccagctcaccgc
cagccacagtttccttcctgtgaagaccgaagttaggcgcctgcaggttt
ggggcttccccaggattcctggtttgaccggctggattccctttcccttg
tgtagtctcagcctgccattgtgaccccatcattattctttaaagcgatt
gattgagcttctgagcgctctggagcgtgcactcggggagcgcctctctg
ccagctgggggacctcaagttgttaccaacccccttctctggattgcgtc
cagctcattcgtgggcctgaacgtgggtgtggagccagctgagcatttcg
tttcccttagcacaagatggaatgttgtttaaggtaatatttaaggcagc
ttgccgttttaagagtgatacacgcccaccacaggagaagagagcggagt
aactcaaaactgccttcacaggaggcagtttttcttactttacaaccctt
ggtttgtttgtggactctacaaaatgtcacctaccatctaggagttgagg
cccatatttatttatccccccccctttttttgtttgtttggttttgggta
tttagagatagggtctctctgtatagctctggctgtccactctgtctgga
actctctctgtataccagaattcacagagatctgcctgctcctgtctctt
gagtattgggattaaaggcacatgccatcactgcctggcttttgtttgtt
tttgagattatgtagcccaggctgacttcagactccttatatagcttaag
ttggtttcaaactcctgattctccatggcccatggtttctaattcctcat
tataatacttatattgcctgctggatatgactctctaggggacaactcct
gggatgtctgatgtagtttcagatctggtgattgacaaggaacgtcaacc
taaaggtgggtgtcactatcgtgagggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79762515_79763667
seq2: B6Ng01-317N03.b_49_1207 (reverse)

seq1  TCTAA-TTCTCGC-CGCGCCACATAATCCCAAGTGAGT--GGGTCATCGG  46
      ||||| |||| || ||||||||||||| || |||||||  || ||||| |
seq2  TCTAATTTCTTGCGCGCGCCACATAATTCC-AGTGAGTTGGGTTCATCCG  49

seq1  TGTGCAGA-GCTTGAAGGCTGAAAATGACAGTTTACTGGCAACTGCCCCA  95
      |||||||| ||||  ||||||||||||||||||  |||   |||||||||
seq2  TGTGCAGAGGCTTTGAGGCTGAAAATGACAGTTACCTG--CACTGCCCCA  97

seq1  TGATAGAAACTAATTCGAAAATAACAGAATTCCTATGGTCCACAAAAGGG  145
      |||||||||   ||||||||||||||||||| ||||||| ||||||||||
seq2  TGATAGAAAACTATTCGAAAATAACAGAATT-CTATGGT-CACAAAAGGG  145

seq1  CACA-GGATACCCTTTTACAGCTGCAGTAACACAAG-AGTAATTTCCTCA  193
      |||| ||||||||||||||||||||||||||||||| ||| ||||| |||
seq2  CACAGGGATACCCTTTTACAGCTGCAGTAACACAAGAAGTTATTTCTTCA  195

seq1  GAGGAATAAATGT--AACAT-ATGCT-AGTGTTCATG-TTTGCTGCATTT  238
      |||||||||||||  ||||| ||||| |||||||||| ||||||||| ||
seq2  GAGGAATAAATGTTAAACATAATGCTAAGTGTTCATGTTTTGCTGCA-TT  244

seq1  GGTTTCTTGTTAATACAGTACTATTCTGTTCTGCACTGTGGCATAGCTTG  288
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTGTAAATACAGTACTATTCTGTTCTGCACTGTGGCATAGCTTG  294

seq1  TTTCTTTATTGGAAGGCCTATGTTTACTTCTAAAAGTTTTTTTTTTTCAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATTGGAAGGCCTATGTTTACTTCTAAAAGTTTTTTTTTTTCAT  344

seq1  TTTGCATCAAGAGGTGGGAGTGTCATTGATGGAACATTTAAGTAAGAAAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCAAGAGGTGGGAGTGTCATTGATGGAACATTTAAGTAAGAAAT  394

seq1  GTATATAAAAAGAACAACAGAGGCCTTCAGAATGGTGTGTATCAAGAGAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAAAAAGAACAACAGAGGCCTTCAGAATGGTGTGTATCAAGAGAC  444

seq1  AATAGGGCAAAATATCAAAGTGACAGCGAACCTATCCTATGATAGAATCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGCAAAATATCAAAGTGACAGCGAACCTATCCTATGATAGAATCT  494

seq1  ACTATTATATTAGGATTATTAAATTCCTAACAGATGGCGGCCACCACTGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATATTAGGATTATTAAATTCCTAACAGATGGCGGCCACCACTGG  544

seq1  GAGGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGGA  594

seq1  ATTCCAGTGCCAAGAAGCAGGAGTGGGTGGGTAGGACAGCAGGGCGGGGG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGTGCCAAGAAGCAGGAGTGGGTGGGTAGGACAGCAGGGCGGGGG  644

seq1  GAGGGATTAGGGAACTTTCGGGATAGCATTTGAAATGTATATAAAGAACA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATTAGGGAACTTTCGGGATAGCATTTGAAATGTATATAAAGAACA  694

seq1  TATCTAATAAAATTTAAAAAAAGAAAATACTCAGTAACAATCATAATGGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATAAAATTTAAAAAAAGAAAATACTCAGTAACAATCATAATGGT  744

seq1  AAATATGTAATTTAAAAAAAAAAAAAAAGAGTAATTTCCTAACAGGCGTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTAATTTAAAAAAAAAAAAAAAGAGTAATTTCCTAACAGGCGTT  794

seq1  CCAGAATAGCTTAACAAATAGACTAATCAATGGACCAAAGTTGTTATATA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATAGCTTAACAAATAGACTAATCAATGGACCAAAGTTGTTATATA  844

seq1  TCAATTAGATTGCAGAATGTTTCAGGCATCATTTACAGATATTAACTTTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAGATTGCAGAATGTTTCAGGCATCATTTACAGATATTAACTTTT  894

seq1  AGCTGGGCGTGGTGGCACAGCATTCAGAAGCCTGAGGCAGAATGATTCCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGCGTGGTGGCACAGCATTCAGAAGCCTGAGGCAGAATGATTCCC  944

seq1  ACACATTCAAGGCCAGCCTACCCTTCTTAAAAATAAACAAACAAAACCCC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCAAGGCCAGCCTACCCTTCTTAAAAATAAACAAACAAAACCCC  994

seq1  AACAAATATTATCTTTAAAATTATTATAGCTCTCCAAATCACATCAGTAG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATATTATCTTTAAAATTATTATAGCTCTCCAAATCACATCAGTAG  1044

seq1  TTATCTGTGGCCACAGACACCTCCATGAGCCCTGCAGAGCCTGGTCTCTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTGGCCACAGACACCTCCATGAGCCCTGCAGAGCCTGGTCTCTT  1094

seq1  AAATTCTTCTAACAGAGGCAGAGAAAAAACACAACGGAACTCTCTACCAA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTCTAACAGAGGCAGAGAAAAAACACAACGGAACTCTCTACCAA  1144

seq1  AACGCTGAAGAATTC  1153
      |||||||||||||||
seq2  AACGCTGAAGAATTC  1159

seq1: chr11_79620354_79621495
seq2: B6Ng01-317N03.g_67_1197

seq1  GAATTCCACTTCTTCCTCCTCCTCCTCTCTTAAAGAATGGAATGGGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCTTCCTCCTCCTCCTCTCTTAAAGAATGGAATGGGAAGG  50

seq1  CTGAGCCCCTAGACTCCAGCCCCACAGTACTCAGAGAGCTCACTACTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCCTAGACTCCAGCCCCACAGTACTCAGAGAGCTCACTACTGTC  100

seq1  CCCAGCGGGACTCATCAGCCTTCATCAGTCAAACCCTGCCAGCAACCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCGGGACTCATCAGCCTTCATCAGTCAAACCCTGCCAGCAACCAGT  150

seq1  GGCTCATGGACTCCCCAGGCTGCCAGATCTAAGCTCACCCAGCTCACCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATGGACTCCCCAGGCTGCCAGATCTAAGCTCACCCAGCTCACCGC  200

seq1  CAGCCACAGTTTCCTTCCTGTGAAGACCGAAGTTAGGCGCCTGCAGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACAGTTTCCTTCCTGTGAAGACCGAAGTTAGGCGCCTGCAGGTTT  250

seq1  GGGGCTTCCCCAGGATTCCTGGTTTGACCGGCTGGATTCCCTTTCCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCCCCAGGATTCCTGGTTTGACCGGCTGGATTCCCTTTCCCTTG  300

seq1  TGTAGTCTCAGCCTGCCATTGTGACCCCATCATTATTCTTTAAAGCGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTCAGCCTGCCATTGTGACCCCATCATTATTCTTTAAAGCGATT  350

seq1  GATTGAGCTTCTGAGCGCTCTGGAGCGTGCACTCGGGGAGCGCCTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAGCTTCTGAGCGCTCTGGAGCGTGCACTCGGGGAGCGCCTCTCTG  400

seq1  CCAGCTGGGGGACCTCAAGTTGTTACCAACCCCCTTCTCTGGATTGCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGGGGACCTCAAGTTGTTACCAACCCCCTTCTCTGGATTGCGTC  450

seq1  CAGCTCATTCGTGGGCCTGAACGTGGGTGTGGAGCCAGCTGAGCATTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATTCGTGGGCCTGAACGTGGGTGTGGAGCCAGCTGAGCATTTCG  500

seq1  TTTCCCTTAGCACAAGATGGAATGTTGTTTAAGGTAATATTTAAGGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTAGCACAAGATGGAATGTTGTTTAAGGTAATATTTAAGGCAGC  550

seq1  TTGCCGTTTTAAGAGTGATACACGCCCACCACAGGAGAAGAGAGCGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGTTTTAAGAGTGATACACGCCCACCACAGGAGAAGAGAGCGGAGT  600

seq1  AACTCAAAACTGCCTTCACAGGAGGCAGTTTTTCTTACTTTACAACCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAAACTGCCTTCACAGGAGGCAGTTTTTCTTACTTTACAACCCTT  650

seq1  GGTTTGTTTGTGGACTCTACAAAATGTCACCTACCATCTAGGAGTTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTTGTGGACTCTACAAAATGTCACCTACCATCTAGGAGTTGAGG  700

seq1  CCCATATTTATTTATCCCCCCCCCTTTTTTTGTTTGTTTGGTTTTGGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTTATTTATCCCCCCCCCTTTTTTTGTTTGTTTGGTTTTGGGTA  750

seq1  TTTAGAGATAGGGTCTCTCTGTATAGCTCTGGCTGTCCACTCTGTCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGATAGGGTCTCTCTGTATAGCTCTGGCTGTCCACTCTGTCTGGA  800

seq1  ACTCTCTCTGTATACCAGAATTCACAGAGATCTGCCTGCTCCTGTCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCTGTATACCAGAATTCACAGAGATCTGCCTGCTCCTGTCTCTT  850

seq1  GAGTATTGGGATTAAAGGCACATGCCATCACTGCCTGGC-TTTGTTTGTT  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGTATTGGGATTAAAGGCACATGCCATCACTGCCTGGCTTTTGTTTGTT  900

seq1  TTTGAGA-TATGTAGCCCAGGCTGACTTCAGACTCCTTATATAGCTAAGG  948
      ||||||| |||||||||||||||||||||||||||||||||||||| | |
seq2  TTTGAGATTATGTAGCCCAGGCTGACTTCAGACTCCTTATATAGCTTAAG  950

seq1  TTGGTTTCAAACTCCTGATTCTCCCATGGGCCCATGG-TTCTAATTCCTC  997
      |||||||||||||||||||||| |||| ||||||||| ||||||||||||
seq2  TTGGTTTCAAACTCCTGATTCT-CCAT-GGCCCATGGTTTCTAATTCCTC  998

seq1  A-TATAATACTTAATATTGCCTGCTGGATAGGGGACTCTCCTAGGGGACA  1046
      | |||||||||| |||||||||||||||||   |||||| ||||||||||
seq2  ATTATAATACTT-ATATTGCCTGCTGGATA--TGACTCT-CTAGGGGACA  1044

seq1  AACCTCTGGGGATGTCTGAATGGTAGTTTCTAGA-CTGGGTTGATTGACA  1095
      |  |||  |||||||||||   |||||||| ||| ||||  |||||||||
seq2  A--CTCCTGGGATGTCTGA--TGTAGTTTC-AGATCTGG--TGATTGACA  1087

seq1  AGGGAAAAGGTCACCCTAAATGTGGGTGTCACTATCCTGTGGGTGGG  1142
      |||   || |||| |||||| ||||||||||||||| || |||||||
seq2  AGG---AACGTCAACCTAAAGGTGGGTGTCACTATCGTGAGGGTGGG  1131