BAC Information

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BAC

Clone NameB6Ng01-317O18
Chromosome11 (Build37)
Map Location 45,658,898 - 45,778,027
singlet/doubletdoublet
Overlap geneClint1, Lsm11, Thg1l
Upstream geneEbf1, LOC382510, LOC633082
Downstream geneSox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317O18.bB6Ng01-317O18.g
ACCGA107943GA107944
length1,0761,049
definitionB6Ng01-317O18.b B6Ng01-317O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,658,898 - 45,659,986)(45,776,996 - 45,778,027)
sequence
gaattcagaaactggtgaaacctcagttggttttctcaagatacttggcc
tttttcagaaatccccttctttaaaaatgaattagctggggctagagagt
tggctccatggtcagaggacatgggttcaattcccaatacccacatggca
actcccaactgtctgtaactctagtctcaggggatccaacaccctcttct
atctccataggcatcagacacacacacagtacgcacatatattcatgcag
ataaaacattcaaacacataaaaatgctaatgtaaatagatctagaaaag
aaaaagagggctggagagatggctcagtggttaagagcactgactgttct
tccaaaggtcatgagttcaaatcctagcaaccacatggtggctcacaacc
atccttaataagatctgacgcccttttctggtgtgtctgaagacagctac
agtgtacttagatataataataaataaatctttaaaagaaaagaaagaaa
aagaaacgagctagcccatggtttctgataaccacccaaagtctgagttt
gatttggctgtgtagaacaagttcccatagtcatgctgatgccatcctgg
ccttctagaaataaagtttttgagaaggtagcttgtccaccctggactct
tctgtttaaggaggaaaaagacatggggcagcaggagggaggcacacagg
cagcaggcacactgcctcatctatactcctattcaggcctgccttctccc
tgcagcataccatcttgctttctaaggagacccatctgagccccactgag
cgcctgagtgcaccaaaggggattgagtttcagccaggaagagctcatat
cagcagaacaggcagttagcgagagcaagtctgagtagtcaatttgcctg
ctgtctacatggcaacgggcagtggcacaggcattcacatcttcttgaag
tctcttactatattcctcctgccttcttttattttgctcttcctgccctg
gctgtcttagagtcacacagctaggagattgaaacagtaaacttagtcta
ggccattccagctctgcaaaccaaac
gaattccaagctcagggtaggcttcaaggattttctgggaatcattggaa
caccggtggaggcttagctatgtcaaaatcaaaccttaaaggcacttata
agaaaacaattctgaaagagagcacatggatccaaacaccagactaactt
ggggacaggttttgaatattctgtttacattttcatttgcaaaatgggtt
gttctaacgataaagacaggactctgctagacatgggtcttttatccgag
tactcaggcaggcagatctacacagcaagtttcaggctactcagggctgc
ataatgaggttctgttatctcccccacccctcaaaagaggagctctaacc
aggaagggttactacgcataatcacacagcacttggaaatgctcaataga
ttcggtcacctgtatcaccaccgggctgtggctcatctgaaggtgggagg
tgagacatgaaacactgtttatcaattgtgttttcagtcagtgtgtgtag
taaagtatatcatgtcattcactgatgcatcctttatccacatcaatggt
agatcccgtaacagctcactccgtttgatagcatgacctccaactttgca
accacaatctgtaactacaacgctactgaaaccttacttctgccccagca
cagactgtaccttctgctgaagggcttgcagtggggagtgggggttgctc
tttcattctgcccccacccacacgacaggagtggagttgggattcatggg
ctggttctgagttctcgatacaaatactgtcttttcaagatatgattccc
gtggaggctcggggctggagggggctgaggggcttggcctttggcctttg
gcatttaagctagaaaatgccatgctgagttggctgggctggaaacaatt
ttggtatccaccctgaccctccattgctacctccaggttccttgggtgga
agaacagcattaaggtcccataaggccctgccaactgtcctgtcctccag
ctccgttctaagaattgctcagtgctccccatggggctacgcccttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_45658898_45659986
seq2: B6Ng01-317O18.b_49_1124

seq1  GAATTCAGAAACTGGTGAAACCTCAGTTGGTTTTCTCAAGATACTTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAACTGGTGAAACCTCAGTTGGTTTTCTCAAGATACTTGGCC  50

seq1  TTTTTCAGAAATCCCCTTCTTTAAAAATGAATTAGCTGGGGCTAGAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGAAATCCCCTTCTTTAAAAATGAATTAGCTGGGGCTAGAGAGT  100

seq1  TGGCTCCATGGTCAGAGGACATGGGTTCAATTCCCAATACCCACATGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCATGGTCAGAGGACATGGGTTCAATTCCCAATACCCACATGGCA  150

seq1  ACTCCCAACTGTCTGTAACTCTAGTCTCAGGGGATCCAACACCCTCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAACTGTCTGTAACTCTAGTCTCAGGGGATCCAACACCCTCTTCT  200

seq1  ATCTCCATAGGCATCAGACACACACACAGTACGCACATATATTCATGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATAGGCATCAGACACACACACAGTACGCACATATATTCATGCAG  250

seq1  ATAAAACATTCAAACACATAAAAATGCTAATGTAAATAGATCTAGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACATTCAAACACATAAAAATGCTAATGTAAATAGATCTAGAAAAG  300

seq1  AAAAAGAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGTTCT  350

seq1  TCCAAAGGTCATGAGTTCAAATCCTAGCAACCACATGGTGGCTCACAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGTCATGAGTTCAAATCCTAGCAACCACATGGTGGCTCACAACC  400

seq1  ATCCTTAATAAGATCTGACGCCCTTTTCTGGTGTGTCTGAAGACAGCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAATAAGATCTGACGCCCTTTTCTGGTGTGTCTGAAGACAGCTAC  450

seq1  AGTGTACTTAGATATAATAATAAATAAATCTTTAAAAGAAAAGAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTTAGATATAATAATAAATAAATCTTTAAAAGAAAAGAAAGAAA  500

seq1  AAGAAACGAGCTAGCCCATGGTTTCTGATAACCACCCAAAGTCTGAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACGAGCTAGCCCATGGTTTCTGATAACCACCCAAAGTCTGAGTTT  550

seq1  GATTTGGCTGTGTAGAACAAGTTCCCATAGTCATGCTGATGCCATCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGCTGTGTAGAACAAGTTCCCATAGTCATGCTGATGCCATCCTGG  600

seq1  CCTTCTAGAAATAAAGTTTTTGAGAAGGTAGCTTGTCCACCCTGGACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAGAAATAAAGTTTTTGAGAAGGTAGCTTGTCCACCCTGGACTCT  650

seq1  TCTGTTTAAGGAGGAAAAAGACATGGGGCAGCAGGAGGGAGGCACACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTAAGGAGGAAAAAGACATGGGGCAGCAGGAGGGAGGCACACAGG  700

seq1  CAGCAGGCACACTGCCTCATCTATACTCCTATTCAGGCCTGCCTTCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCACACTGCCTCATCTATACTCCTATTCAGGCCTGCCTTCTCCC  750

seq1  TGCAGCATACCATCTTGCTTTCTAAGGAGACCCATCTGAGCCCCACTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCATACCATCTTGCTTTCTAAGGAGACCCATCTGAGCCCCACTGAG  800

seq1  CGCCTGAGTGCACCAAAGGGGATTGAGTTTCAGCCAGGAAGAGCTCATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGAGTGCACCAAAGGGGATTGAGTTTCAGCCAGGAAGAGCTCATAT  850

seq1  CAGCAGAACAGGCAGTTAGCGAGAGCAAGTCTGAGTAGTCAATTTGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAACAGGCAGTTAGCGAGAGCAAGTCTGAGTAGTCAATTTGCCTG  900

seq1  CTGTCTACATGGCAACGGGCAGTGGGCACAGGCATTCACATCTTTCTTGA  950
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  CTGTCTACATGGCAACGGGCAGT-GGCACAGGCATTCACATC-TTCTTGA  948

seq1  AGTCTCTTACTATTATTCCTCCTGCCTTTCTTTTTATTTTTGCTCTTCCT  1000
      |||||||||||| ||||||||||||| |||||||   |||||||||||||
seq2  AGTCTCTTACTA-TATTCCTCCTGCC-TTCTTTT--ATTTTGCTCTTCCT  994

seq1  GCCCTGGCTGTCTTTAGAAGTCACACAGCTAGGAAGAATGAAACAGTAAA  1050
      |||||||||||| |||| ||||||||||||||| ||| ||||||||| ||
seq2  GCCCTGGCTGTC-TTAG-AGTCACACAGCTAGG-AGATTGAAACAGT-AA  1040

seq1  ACCTAGTCTAGGGCATTCCCAGCTCTGGCAAAAACAAAC  1089
      || ||||||||| |||| |||||||||   ||| |||||
seq2  ACTTAGTCTAGGCCATT-CCAGCTCTG--CAAACCAAAC  1076

seq1: chr11_45776996_45778027
seq2: B6Ng01-317O18.g_68_1116 (reverse)

seq1  AGCAA-GGCGTAG-CCCAT-GGGAGCACTGAGCAA-TCTTAG-ACGGAGC  45
      ||||| ||||||| ||||| ||||||||||||||| |||||| |||||||
seq2  AGCAAGGGCGTAGCCCCATGGGGAGCACTGAGCAATTCTTAGAACGGAGC  50

seq1  TGGA-GACA-GACAGTTGGCAGGGCC-TATGGGACC-TAATGCTGTTCTT  91
      |||| |||| |||||||||||||||| ||||||||| |||||||||||||
seq2  TGGAGGACAGGACAGTTGGCAGGGCCTTATGGGACCTTAATGCTGTTCTT  100

seq1  CCACCCAAGAAACCTG--AGTAGCAATGGAGGGTCAGGGT-GATACCAAA  138
      ||||||||| ||||||   ||||||||||||||||||||| |||||||||
seq2  CCACCCAAGGAACCTGGAGGTAGCAATGGAGGGTCAGGGTGGATACCAAA  150

seq1  AT--GTTCCAGCCCAG-CAACTCAGCAT-GCATTTTCTAGCCTAAATGCC  184
      ||   ||||||||||| ||||||||||| |||||||||||| ||||||||
seq2  ATTGTTTCCAGCCCAGCCAACTCAGCATGGCATTTTCTAGCTTAAATGCC  200

seq1  AAAGGCCAAAGGCCAAGCCCCTCAGCCCCCTCCAG-CCCGAGCCTCCACG  233
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAAGGCCAAAGGCCAAGCCCCTCAGCCCCCTCCAGCCCCGAGCCTCCACG  250

seq1  GGAATCATATCTTGAAAAGACAGTATTTGTATCGAGAACTCAGAACCAGC  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCATATCTTGAAAAGACAGTATTTGTATCGAGAACTCAGAACCAGC  300

seq1  CCATGAATCCCAACTCCACTCCTGTCGTGTGGGTGGGGGCAGAATGAAAG  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAATCCCAACTCCACTCCTGTCGTGTGGGTGGGGGCAGAATGAAAG  350

seq1  AGCAACCCCCACTCCCCACTGCAAGCCCTTCAGCAGAAGGTACAGTCTGT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCCCCACTCCCCACTGCAAGCCCTTCAGCAGAAGGTACAGTCTGT  400

seq1  GCTGGGGCAGAAGTAAGGTTTCAGTAGCGTTGTAGTTACAGATTGTGGTT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCAGAAGTAAGGTTTCAGTAGCGTTGTAGTTACAGATTGTGGTT  450

seq1  GCAAAGTTGGAGGTCATGCTATCAAACGGAGTGAGCTGTTACGGGATCTA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTTGGAGGTCATGCTATCAAACGGAGTGAGCTGTTACGGGATCTA  500

seq1  CCATTGATGTGGATAAAGGATGCATCAGTGAATGACATGATATACTTTAC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGATGTGGATAAAGGATGCATCAGTGAATGACATGATATACTTTAC  550

seq1  TACACACACTGACTGAAAACACAATTGATAAACAGTGTTTCATGTCTCAC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACTGACTGAAAACACAATTGATAAACAGTGTTTCATGTCTCAC  600

seq1  CTCCCACCTTCAGATGAGCCACAGCCCGGTGGTGATACAGGTGACCGAAT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCTTCAGATGAGCCACAGCCCGGTGGTGATACAGGTGACCGAAT  650

seq1  CTATTGAGCATTTCCAAGTGCTGTGTGATTATGCGTAGTAACCCTTCCTG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAGCATTTCCAAGTGCTGTGTGATTATGCGTAGTAACCCTTCCTG  700

seq1  GTTAGAGCTCCTCTTTTGAGGGGTGGGGGAGATAACAGAACCTCATTATG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGCTCCTCTTTTGAGGGGTGGGGGAGATAACAGAACCTCATTATG  750

seq1  CAGCCCTGAGTAGCCTGAAACTTGCTGTGTAGATCTGCCTGCCTGAGTAC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGAGTAGCCTGAAACTTGCTGTGTAGATCTGCCTGCCTGAGTAC  800

seq1  TCGGATAAAAGACCCATGTCTAGCAGAGTCCTGTCTTTATCGTTAGAACA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATAAAAGACCCATGTCTAGCAGAGTCCTGTCTTTATCGTTAGAACA  850

seq1  ACCCATTTTGCAAATGAAAATGTAAACAGAATATTCAAAACCTGTCCCCA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTTGCAAATGAAAATGTAAACAGAATATTCAAAACCTGTCCCCA  900

seq1  AGTTAGTCTGGTGTTTGGATCCATGTGCTCTCTTTCAGAATTGTTTTCTT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTCTGGTGTTTGGATCCATGTGCTCTCTTTCAGAATTGTTTTCTT  950

seq1  ATAAGTGCCTTTAAGGTTTGATTTTGACATAGCTAAGCCTCCACCGGTGT  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGCCTTTAAGGTTTGATTTTGACATAGCTAAGCCTCCACCGGTGT  1000

seq1  TCCAATGATTCCCAGAAAATCCTTGAAGCCTACCCTGAGCTTGGAATTC  1032
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGATTCCCAGAAAATCCTTGAAGCCTACCCTGAGCTTGGAATTC  1049