BAC Information

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BAC

Clone NameB6Ng01-318A14
Chromosome11 (Build37)
Map Location 83,667,767 - 83,827,403
singlet/doubletdoublet
Overlap geneTcf2, Ddx52, Ap1gbp1
Upstream geneRffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191
Downstream geneDusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318A14.bB6Ng01-318A14.g
ACCGA108026GA108027
length1,1871,089
definitionB6Ng01-318A14.b B6Ng01-318A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,826,230 - 83,827,403)(83,667,767 - 83,668,857)
sequence
gaattccaggacagcacagaaaaaccctgtctcaaacaacaacaacaaca
acaacaacaacaacaacaacaacaacagcaacaacaaatcctcctcctcc
tcctcatccaagtccttcaatgattttagaagctagcatagcttgtgtga
cattgccagtgttctctgtgagcacacctgtttcctctgatagccagcat
ggattctaacagcagcaacagagaacacccacatgtttgtgggatgtctc
atgccctgacagagacaagcattagccaaccatatcttacctggcatcag
gattaaacaaccacagtgttattggaacctagaccacagaatacaagcac
acacacacacacaaaggatattgtgttcttatgctgctaaaactacctcc
ctaaaaataatatagtgtctagacacaatgagttgctcaaggagtgacag
ttacatacagggacagtctcttctgcccatcagggagctaaagcacctgg
tagactgctctctggcgtcagagactctactgacaaaggaagccaaggcc
tggtggggggcagcgtcctggggggagcagtgcggctggctggctgctgg
cgtctctagctcgaggcttttttccccagcttgttagcagcacagatggt
cgacaggcagagcactctgtacacagttttaacggtaacctccctcaact
ttcaacacatacacatctcaagtggaaggcctggcttttctgagagtaaa
tttcacctgacacacaacttttttcttttcttgggtggcatatcaaagtg
acttctggaatcctactcaaaattcccattttcaggaattcttaaaaaca
acaacaaaccccaaatcttcaaatcatgtgtaaaaagtggaaagcgctga
aatcaatgccttttccctgaaatctttatgtgttttgggtttgtgaccgg
aaaaagaattctgtccccacggctcctcattctctcttccctctacaatg
ggagcatgtagttcaagtctggatactcactgctaaccttcactggtctt
tgagatttgcatagtttaattaatatattgatggattagttggcagttgc
ttggaataaaacccctgtgtgcttttgtatactctacacttgagtcaggc
caaagaatgttttcctttaagaaaagtggggaaacac
gaattctccaggtctgacactggaacgcagttcctctgctttttttctta
ctatttcattatgttgttctactttctgggccttaataaatgcttgagga
attagttaatttatgtaccattaatgtgaacgtttacaattcacaaaaac
atctcattcgaaagcctggcttctcacgaatccgatagcaaaggcttgct
gaaatagccacaattcaaatgctatacaatatctcccttgattgctggag
atttttaacgcgttaaacaaactaattgatttttttcaggcaccattgaa
aaaaataattgttttaccactgtatctaatttggcctcagcttcaacacc
aatttttattgtttcatctgaacccaattttctctttgctttttgatgtc
ttgttaagctaatatattgtgtgtatatgtttgtgtatattatatatcaa
catgtagtgaagaattgtttctatagctgcattaaataactcatatacat
acttgtattgttcctttaatacttttgatctgtgctgtgccttatgagac
ttggtctcttatgattcttagagactttcttagtctcttcatttcaatga
cagttctcattctaagtcacctatttaacaagcaagaaaaagtaacagtg
aagttaaaacaacatttttttaaaagcctgggagataccctcgtgccgtg
tttataatgcaagctgtgcttgcagttttgagaaaccagaagcatgtcta
ttctcagtccaaacttgaaatcagggagaactgctacctcccaggtggcc
tctctgtatcagagagatgcaatcttacaggcaaacagagtatttgggag
cattgtcttactcccaatactgaaattactcttccttgatgggttttatt
ttagaggcggggctgtggatttatttttttaagcatacctgctttgcaag
tgtcctgttcaacttgagagagcgcatattttgagacgctttgctaaaac
tccaaaaacaatgtaatatttgatcacaaaggatcacactattacaattg
cttatggaaatatttcagcttgatggctgagttctagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83826230_83827403
seq2: B6Ng01-318A14.b_45_1230 (reverse)

seq1  TGTTTCC-----ATTCTTAA--GAAAACATCTTTTGGCCTGACTCAGTGG  43
      |||||||      |||||||  ||||||||  ||||||||||||||   |
seq2  TGTTTCCCCACTTTTCTTAAAGGAAAACATTCTTTGGCCTGACTCAAGTG  50

seq1  TAGAGTATTTACAAA---GCACAGGGGTTTTA-TCCCAGC-ACTG-CAAC  87
      |||||||  ||||||    ||||||||||||| ||| ||| |||| ||||
seq2  TAGAGTA--TACAAAAGCACACAGGGGTTTTATTCCAAGCAACTGCCAAC  98

seq1  TAATCAATCAATATATTAATTAACTAATGCAAATCTCAAAGACCAGTGAA  137
      ||||| |||||||||||||||||   ||||||||||||||||||||||||
seq2  TAATCCATCAATATATTAATTAAACTATGCAAATCTCAAAGACCAGTGAA  148

seq1  GGTTAGCAGTGAGTATCCAGACTTGAAACTACATGCT-CCATTGTAGAGG  186
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  GGTTAGCAGTGAGTATCCAGACTTG-AACTACATGCTCCCATTGTAGAGG  197

seq1  GAAGAGAGAATGAGGAGCCGTGGGGACAGAATTCTTTTTCCGGTCACAAA  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGAATGAGGAGCCGTGGGGACAGAATTCTTTTTCCGGTCACAAA  247

seq1  CCCAAAACACATAAAGATTTCAGGGAAAAGGCATTGATTTCAGCGC-TTC  285
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCAAAACACATAAAGATTTCAGGGAAAAGGCATTGATTTCAGCGCTTTC  297

seq1  CACTTTTTACACATGATTTGAAGATTTGGGGTTTGTTGTTGTTTTTAAGA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTACACATGATTTGAAGATTTGGGGTTTGTTGTTGTTTTTAAGA  347

seq1  ATTCCTGAAAATGGGAATTTTGAGTAGGATTCCAGAAGTCACTTTGATAT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGAAAATGGGAATTTTGAGTAGGATTCCAGAAGTCACTTTGATAT  397

seq1  GCCACCCAAGAAAAGAAAAAAGTTGTGTGTCAGGTGAAATTTACTCTCAG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCAAGAAAAGAAAAAAGTTGTGTGTCAGGTGAAATTTACTCTCAG  447

seq1  AAAAGCCAGGCCTTCCACTTGAGATGTGTATGTGTTGAAAGTTGAGGGAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAGGCCTTCCACTTGAGATGTGTATGTGTTGAAAGTTGAGGGAG  497

seq1  GTTACCGTTAAAACTGTGTACAGAGTGCTCTGCCTGTCGACCATCTGTGC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCGTTAAAACTGTGTACAGAGTGCTCTGCCTGTCGACCATCTGTGC  547

seq1  TGCTAACAAGCTGGGGAAAAAAGCCTCGAGCTAGAGACGCCAGCAGCCAG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACAAGCTGGGGAAAAAAGCCTCGAGCTAGAGACGCCAGCAGCCAG  597

seq1  CCAGCCGCACTGCTCCCCCCAGGACGCTGCCCCCCACCAGGCCTTGGCTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCGCACTGCTCCCCCCAGGACGCTGCCCCCCACCAGGCCTTGGCTT  647

seq1  CCTTTGTCAGTAGAGTCTCTGACGCCAGAGAGCAGTCTACCAGGTGCTTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTCAGTAGAGTCTCTGACGCCAGAGAGCAGTCTACCAGGTGCTTT  697

seq1  AGCTCCCTGATGGGCAGAAGAGACTGTCCCTGTATGTAACTGTCACTCCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTGATGGGCAGAAGAGACTGTCCCTGTATGTAACTGTCACTCCT  747

seq1  TGAGCAACTCATTGTGTCTAGACACTATATTATTTTTAGGGAGGTAGTTT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAACTCATTGTGTCTAGACACTATATTATTTTTAGGGAGGTAGTTT  797

seq1  TAGCAGCATAAGAACACAATATCCTTTGTGTGTGTGTGTGTGCTTGTATT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCATAAGAACACAATATCCTTTGTGTGTGTGTGTGTGCTTGTATT  847

seq1  CTGTGGTCTAGGTTCCAATAACACTGTGGTTGTTTAATCCTGATGCCAGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCTAGGTTCCAATAACACTGTGGTTGTTTAATCCTGATGCCAGG  897

seq1  TAAGATATGGTTGGCTAATGCTTGTCTCTGTCAGGGCATGAGACATCCCA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATGGTTGGCTAATGCTTGTCTCTGTCAGGGCATGAGACATCCCA  947

seq1  CAAACATGTGGGTGTTCTCTGTTGCTGCTGTTAGAATCCATGCTGGCTAT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGTGGGTGTTCTCTGTTGCTGCTGTTAGAATCCATGCTGGCTAT  997

seq1  CAGAGGAAACAGGTGTGCTCACAGAGAACACTGGCAATGTCACACAAGCT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAACAGGTGTGCTCACAGAGAACACTGGCAATGTCACACAAGCT  1047

seq1  ATGCTAGCTTCTAAAATCATTGAAGGACTTGGATGAGGAGGAGGAGGAGG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGCTTCTAAAATCATTGAAGGACTTGGATGAGGAGGAGGAGGAGG  1097

seq1  ATTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG  1147

seq1  TTGTTTGAGACAGGGTTTTTCTGTGCTGTCCTGGAATTC  1174
      |||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAGACAGGGTTTTTCTGTGCTGTCCTGGAATTC  1186

seq1: chr11_83667767_83668857
seq2: B6Ng01-318A14.g_68_1156

seq1  GAATTCTCCAGGTCTGACACTGGAACGCAGTTCCTCTGCTTTTTTTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGGTCTGACACTGGAACGCAGTTCCTCTGCTTTTTTTCTTA  50

seq1  CTATTTCATTATGTTGTTCTACTTTCTGGGCCTTAATAAATGCTTGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCATTATGTTGTTCTACTTTCTGGGCCTTAATAAATGCTTGAGGA  100

seq1  ATTAGTTAATTTATGTACCATTAATGTGAACGTTTACAATTCACAAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTAATTTATGTACCATTAATGTGAACGTTTACAATTCACAAAAAC  150

seq1  ATCTCATTCGAAAGCCTGGCTTCTCACGAATCCGATAGCAAAGGCTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTCGAAAGCCTGGCTTCTCACGAATCCGATAGCAAAGGCTTGCT  200

seq1  GAAATAGCCACAATTCAAATGCTATACAATATCTCCCTTGATTGCTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCCACAATTCAAATGCTATACAATATCTCCCTTGATTGCTGGAG  250

seq1  ATTTTTAACGCGTTAAACAAACTAATTGATTTTTTTCAGGCACCATTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAACGCGTTAAACAAACTAATTGATTTTTTTCAGGCACCATTGAA  300

seq1  AAAAATAATTGTTTTACCACTGTATCTAATTTGGCCTCAGCTTCAACACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATTGTTTTACCACTGTATCTAATTTGGCCTCAGCTTCAACACC  350

seq1  AATTTTTATTGTTTCATCTGAACCCAATTTTCTCTTTGCTTTTTGATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTGTTTCATCTGAACCCAATTTTCTCTTTGCTTTTTGATGTC  400

seq1  TTGTTAAGCTAATATATTGTGTGTATATGTTTGTGTATATTATATATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGCTAATATATTGTGTGTATATGTTTGTGTATATTATATATCAA  450

seq1  CATGTAGTGAAGAATTGTTTCTATAGCTGCATTAAATAACTCATATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTGAAGAATTGTTTCTATAGCTGCATTAAATAACTCATATACAT  500

seq1  ACTTGTATTGTTCCTTTAATACTTTTGATCTGTGCTGTGCCTTATGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATTGTTCCTTTAATACTTTTGATCTGTGCTGTGCCTTATGAGAC  550

seq1  TTGGTCTCTTATGATTCTTAGAGACTTTCTTAGTCTCTTCATTTCAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCTTATGATTCTTAGAGACTTTCTTAGTCTCTTCATTTCAATGA  600

seq1  CAGTTCTCATTCTAAGTCACCTATTTAACAAGCAAGAAAAAGTAACAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCATTCTAAGTCACCTATTTAACAAGCAAGAAAAAGTAACAGTG  650

seq1  AAGTTAAAACAACATTTTTTTAAAAGCCTGGGAGATACCCTCGTGCCGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAACAACATTTTTTTAAAAGCCTGGGAGATACCCTCGTGCCGTG  700

seq1  TTTATAATGCAAGCTGTGCTTGCAGTTTTGAGAAACCAGAAGCATGTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATGCAAGCTGTGCTTGCAGTTTTGAGAAACCAGAAGCATGTCTA  750

seq1  TTCTCAGTCCAAACTTGAAATCAGGGAGAACTGCTACCTCCCAGGTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCCAAACTTGAAATCAGGGAGAACTGCTACCTCCCAGGTGGCC  800

seq1  TCTCTGTATCAGAGAGATGCAATCTTACAGGCAAACAGAGTATTTGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATCAGAGAGATGCAATCTTACAGGCAAACAGAGTATTTGGGAG  850

seq1  CATTGTCTTACTCCCAATACTGAAATTACTCTTCCTTGATGGGTTTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTTACTCCCAATACTGAAATTACTCTTCCTTGATGGGTTTTATT  900

seq1  TTAGAGGCGGGGCTGTGGATT--ATTTTTTAAGCATACCTGCTTTGCAAG  948
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  TTAGAGGCGGGGCTGTGGATTTATTTTTTTAAGCATACCTGCTTTGCAAG  950

seq1  TGTCCTGTTCAACTTGAGAGAGCGCATA-TTTGAGAACGCTTTGCTAAAA  997
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  TGTCCTGTTCAACTTGAGAGAGCGCATATTTTGAG-ACGCTTTGCTAAAA  999

seq1  CTCCAAAAACAATGTAATATTTGATCACAAAAGGAATCACAACTA-TACA  1046
      |||||||||||||||||||||||||||||||  | ||||| |||| ||||
seq2  CTCCAAAAACAATGTAATATTTGATCACAAA--GGATCAC-ACTATTACA  1046

seq1  AATGCTTAT-GAAATATTTCAGTTTGATTGCTGGAGGTTTCTAGAT  1091
      | ||||||| |||||||||||| ||||| ||| |||  ||||||||
seq2  ATTGCTTATGGAAATATTTCAGCTTGATGGCT-GAG--TTCTAGAT  1089