BAC Information

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BAC

Clone NameB6Ng01-318H14
Chromosome11 (Build37)
Map Location 40,557,663 - 40,705,962
singlet/doubletdoublet
Overlap geneCcng1
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2
Downstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318H14.bB6Ng01-318H14.g
ACCGA108353GA108354
length1,1931,080
definitionB6Ng01-318H14.b B6Ng01-318H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,557,663 - 40,558,845)(40,704,885 - 40,705,962)
sequence
gaattcagaaagacaatcacagggtggaatttcataaatctttccagtct
acaagtagagtctctacattgagtccctctttgatttcagttattggcgt
tacagtttacagatcctgtgtcttcattcccccaatactcatttttaggt
ggaacaatttaaagtgtcattgattttataatttagtattatcatttata
cagataggcagtattattatttatacagataggtgtgatttgagtttgtt
gactttgtactttatagtcttgttaaattcagtttgtttcaccttggttt
atttttgtgggttctttttgatttcttgagtttcctgtgtaagtcagttt
cattttaccctttttagttcgtaggctcccccctcccctttttggtctgt
ttgttttggagatggagtcttcacgaagtctatgctgatcttgaaatgac
tttgtgactgagatgtccttgggtgcctgatctcctgcctcccaggtgct
gagatgaagcctattaaccacatcatctttcttggttatactgcctagac
aatagagaagtcgatcagcctggtattagctatgctttaggacggtgaac
acattgctcttcatcagtacgtggaatgctacctgttatccattcttcct
tttttaaatcaggctgaaatttcccaaaatttctagctagctaaacttca
ggaaagggtgtaaaagtcccgtgtgatggtgcgccagctttaatcccagc
gtggcaggcaggtgggtctctgaactcaaggctagcctggtccacagagc
cagatagctacacagaggaaaacctgttttgaaaaacaacaaaagcagaa
taacagaaaacaagatgagaaaagttgtttaatacttccagatcatgtct
ctgtggtacctggtttgaccattttcttgtctggactgttaatgtggtga
gctgtacttactttcagattgtgaaatagcttgtcacatccctcacccaa
acctagccatgagtatcactcagtttacatattttacattcatctcagat
ttgtgtcaatttggaataactgatagtttctgcttcttctctgacttcat
gccattaaattctgatcctgaaagaatgacctgtgcatagctctgttcta
gagagaagctttattaggaacccttgtgtgcaccacccctttt

gaattcaatccttttgtcttttgactctgttcctttttactgggcaacat
gagcatctatgtgaaaagagaacaaatttcttccaaaatataattgtact
ttactgatacaaagtagctacttgtatgcaagaacattttcaaggggtca
agcaagtaaaacaaacccagagggcttttctttaattcaggagtgccctg
acaggacacaaagtcagttcaatataacaacataagttgtccatggattc
ctgaagtatgtttctgccaccacccccccccccacttcagcaaaataaac
agaatgagtgaagccagaaagttggctcagtgaacatttgttatgcaagc
actgtgacttgagttcactctccagaaccacataaatatagagcagagaa
cggatatatgtaatgtatgagaactgatatatgtaaataaaaaaatagaa
tttaattatcttcagatagaaaggaatgtgagagaagactcttgaaaagc
ccacagcattgcaggaaaaggtaacatgctagaattcagagagccaagcc
caacaacttaggactcagtctctgttcattgaagtatctcttaccagtct
cctccagattctcacaccagaatgagaaactattttaggtctttgtcata
gacctcaaaattcctaactcagctacagagcatctgatcagggtagttta
tgtgtcataactactctttagccaaggaaatacagagcaccaagatggat
atgcaggagagaatagtttcccccaggccaaatcaggatgaggatactaa
aataggagaaagagatgcagagcagacaaatttaaggcaatcccaccaga
gtctacccagaagcttcacaaatagtaccatacatctgggaaattgtgaa
taatccacccacagattcactgacattcacatttctgtgtgcttctaaat
tagatctgggatgggaggaggtgtccgcctagttaagagcgagagtttag
gtaaaggatgtgtctagacttgcaaaagacccccttttctatcacctatt
aattggtaatagatctgccatgtacctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40557663_40558845
seq2: B6Ng01-318H14.b_43_1235

seq1  GAATTCAGAAAGACAATCACAGGGTGGAATTTCATAAATCTTTCCAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGACAATCACAGGGTGGAATTTCATAAATCTTTCCAGTCT  50

seq1  ACAAGTAGAGTCTCTACATTGAGTCCCTCTTTGATTTCAGTTATTGGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGAGTCTCTACATTGAGTCCCTCTTTGATTTCAGTTATTGGCGT  100

seq1  TACAGTTTACAGATCCTGTGTCTTCATTCCCCCAATACTCATTTTTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTACAGATCCTGTGTCTTCATTCCCCCAATACTCATTTTTAGGT  150

seq1  GGAACAATTTAAAGTGTCATTGATTTTATAATTTAGTATTATCATTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAATTTAAAGTGTCATTGATTTTATAATTTAGTATTATCATTTATA  200

seq1  CAGATAGGCAGTATTATTATTTATACAGATAGGTGTGATTTGAGTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGGCAGTATTATTATTTATACAGATAGGTGTGATTTGAGTTTGTT  250

seq1  GACTTTGTACTTTATAGTCTTGTTAAATTCAGTTTGTTTCACCTTGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTACTTTATAGTCTTGTTAAATTCAGTTTGTTTCACCTTGGTTT  300

seq1  ATTTTTGTGGGTTCTTTTTGATTTCTTGAGTTTCCTGTGTAAGTCAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGGGTTCTTTTTGATTTCTTGAGTTTCCTGTGTAAGTCAGTTT  350

seq1  CATTTTACCCTTTTTAGTTCGTAGGCTCCCCCCTCCCCTTTTTGGTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACCCTTTTTAGTTCGTAGGCTCCCCCCTCCCCTTTTTGGTCTGT  400

seq1  TTGTTTTGGAGATGGAGTCTTCACGAAGTCTATGCTGATCTTGAAATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGGAGATGGAGTCTTCACGAAGTCTATGCTGATCTTGAAATGAC  450

seq1  TTTGTGACTGAGATGTCCTTGGGTGCCTGATCTCCTGCCTCCCAGGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTGAGATGTCCTTGGGTGCCTGATCTCCTGCCTCCCAGGTGCT  500

seq1  GAGATGAAGCCTATTAACCACATCATCTTTCTTGGTTATACTGCCTAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAGCCTATTAACCACATCATCTTTCTTGGTTATACTGCCTAGAC  550

seq1  AATAGAGAAGTCGATCAGCCTGGTATTAGCTATGCTTTAGGACGGTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAAGTCGATCAGCCTGGTATTAGCTATGCTTTAGGACGGTGAAC  600

seq1  ACATTGCTCTTCATCAGTACGTGGAATGCTACCTGTTATCCATTCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTCTTCATCAGTACGTGGAATGCTACCTGTTATCCATTCTTCCT  650

seq1  TTTTTAAATCAGGCTGAAATTTCCCAAAATTTCTAGCTAGCTAAACTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATCAGGCTGAAATTTCCCAAAATTTCTAGCTAGCTAAACTTCA  700

seq1  GGAAAGGGTGTAAAAGTCCCGTGTGATGGTGCGCCAGCTTTAATCCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGTGTAAAAGTCCCGTGTGATGGTGCGCCAGCTTTAATCCCAGC  750

seq1  GTGGCAGGCAGGTGGGTCTCTGAACTCAAGGCTAGCCTGGTCCACAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGGCAGGTGGGTCTCTGAACTCAAGGCTAGCCTGGTCCACAGAGC  800

seq1  CAGATAGCTACACAGAGGAAAACCTGTTTTGAAAAACAACAAAAGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGCTACACAGAGGAAAACCTGTTTTGAAAAACAACAAAAGCAGAA  850

seq1  TAACAGAAAACAAGATGAGAAAAGTTGTTTAATACTTCCAGATCATGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAAACAAGATGAGAAAAGTTGTTTAATACTTCCAGATCATGTCT  900

seq1  CTGTGGTACCTGGTTTGACCATTTTCTTGTCTGGACTGTTAATGTGGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTACCTGGTTTGACCATTTTCTTGTCTGGACTGTTAATGTGGTGA  950

seq1  GCTGTACTTACTTTCAGATTGTGAAATAGCTTGTCACAATCCCTCACCCA  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTGTACTTACTTTCAGATTGTGAAATAGCTTGTCAC-ATCCCTCACCCA  999

seq1  AACCTAGCCATGAGTATCACTCAGTTTACATA-TTTACATTCATCTCAGA  1049
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACCTAGCCATGAGTATCACTCAGTTTACATATTTTACATTCATCTCAGA  1049

seq1  TTTGTGTTCATTTGGAAT-ACTGATAATTTTTCTGCTGTCTTCCTCTTGT  1098
      |||||||  ||||||||| |||||||   |||||||| |||| ||| || 
seq2  TTTGTGTCAATTTGGAATAACTGATA--GTTTCTGCT-TCTT-CTC-TGA  1094

seq1  CTTCATG-CATT-AATTCTGATCCTGTAAG-ATGAACTGTGAAATAGCTC  1145
      ||||||| |||| ||||||||||||| ||| |||| |||||  |||||||
seq2  CTTCATGCCATTAAATTCTGATCCTGAAAGAATGACCTGTG-CATAGCTC  1143

seq1  TG-TCTAGA-AG-AGAGTTATTAG--AACCTTGTG------ACCCTTTT-  1183
      || |||||| || ||  |||||||  | |||||||      |||| ||| 
seq2  TGTTCTAGAGAGAAGCTTTATTAGGAACCCTTGTGTGCACCACCCCTTTT  1193


seq1: chr11_40704885_40705962
seq2: B6Ng01-318H14.g_66_1145 (reverse)

seq1  GAAAAGTACATGGCAGATCTATTACC-ATTAATAAGTGATAGAAAAAAGG  49
      |||| ||||||||||||||||||||| ||||||| |||||||  ||||||
seq2  GAAAGGTACATGGCAGATCTATTACCAATTAATAGGTGATAG--AAAAGG  48

seq1  GGTCCTTTTGCAAGTCTAGACACATCCTTTCCCTAACCTCTCGCCTCCTT  99
      ||  |||||||||||||||||||||||||| ||||| |||||||   |||
seq2  GGGTCTTTTGCAAGTCTAGACACATCCTTTACCTAAACTCTCGC--TCTT  96

seq1  ACCTAG--CGACACCTCCT-CCATCCCAGATCTAATTTAGAAGCACACAG  146
      | ||||   |||||||||| ||||||||||||||||||||||||||||||
seq2  AACTAGGCGGACACCTCCTCCCATCCCAGATCTAATTTAGAAGCACACAG  146

seq1  -AATGTGAATGTCAGTGAATCTGTGGGTGGATTATTCACAATTT-CCAGA  194
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATGTGAATGTCAGTGAATCTGTGGGTGGATTATTCACAATTTCCCAGA  196

seq1  TGTATGGTACTATTTGTGAAGCTTCTGGGTAGACTCTGGTGGGATTGCCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTACTATTTGTGAAGCTTCTGGGTAGACTCTGGTGGGATTGCCT  246

seq1  TAAATTTGTCTGCTCTGCATCTCTTTCTCCTATTTTAGTATCCTCATCCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGTCTGCTCTGCATCTCTTTCTCCTATTTTAGTATCCTCATCCT  296

seq1  GATTTGGCCTGGGGGAAACTATTCTCTCCTGCATATCCATCTTGGTGCTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGCCTGGGGGAAACTATTCTCTCCTGCATATCCATCTTGGTGCTC  346

seq1  TGTATTTCCTTGGCTAAAGGGTAGTTATGACACATAAACTACCCTGATCA  394
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTATTTCCTTGGCTAAAGAGTAGTTATGACACATAAACTACCCTGATCA  396

seq1  GATGCTCTGTAGCTGAGTTAGGAATTTTGAGGTCTATGACAAAGACCTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTGTAGCTGAGTTAGGAATTTTGAGGTCTATGACAAAGACCTAA  446

seq1  AATAGTTTCTCATTCTGGTGTGAGAATCTGGAGGAGACTGGTAAGAGATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTCTCATTCTGGTGTGAGAATCTGGAGGAGACTGGTAAGAGATA  496

seq1  CTTCAATGAACAGAGACTGAGTCCTAAGTTGTTGGGCTTGGCTCTCTGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGAACAGAGACTGAGTCCTAAGTTGTTGGGCTTGGCTCTCTGAA  546

seq1  TTCTAGCATGTTACCTTTTCCTGCAATGCTGTGGGCTTTTCAAGAGTCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCATGTTACCTTTTCCTGCAATGCTGTGGGCTTTTCAAGAGTCTT  596

seq1  CTCTCACATTCCTTTCTATCTGAAGATAATTAAATTCTATTTTTTTATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACATTCCTTTCTATCTGAAGATAATTAAATTCTATTTTTTTATTT  646

seq1  ACATATATCAGTTCTCATACATTACATATATCCGTTCTCTGCTCTATATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATCAGTTCTCATACATTACATATATCCGTTCTCTGCTCTATATT  696

seq1  TATGTGGTTCTGGAGAGTGAACTCAAGTCACAGTGCTTGCATAACAAATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGTTCTGGAGAGTGAACTCAAGTCACAGTGCTTGCATAACAAATG  746

seq1  TTCACTGAGCCAACTTTCTGGCTTCACTCATTCTGTTTATTTTGCTGAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAGCCAACTTTCTGGCTTCACTCATTCTGTTTATTTTGCTGAAG  796

seq1  TGGGGGGGGGGGTGGTGGCAGAAACATACTTCAGGAATCCATGGACAACT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGGGGGGTGGTGGCAGAAACATACTTCAGGAATCCATGGACAACT  846

seq1  TATGTTGTTATATTGAACTGACTTTGTGTCCTGTCAGGGCACTCCTGAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGTTATATTGAACTGACTTTGTGTCCTGTCAGGGCACTCCTGAAT  896

seq1  TAAAGAAAAGCCCTCTGGGTTTGTTTTACTTGCTTGACCCCTTGAAAATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAGCCCTCTGGGTTTGTTTTACTTGCTTGACCCCTTGAAAATG  946

seq1  TTCTTGCATACAAGTAGCTACTTTGTATCAGTAAAGTACAATTATATTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCATACAAGTAGCTACTTTGTATCAGTAAAGTACAATTATATTTT  996

seq1  GGAAGAAATTTGTTCTCTTTTCACATAGATGCTCATGTTGCCCAGTAAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAATTTGTTCTCTTTTCACATAGATGCTCATGTTGCCCAGTAAAA  1046

seq1  AGGAACAGAGTCAAAAGACAAAAGGATTGAATTC  1078
      ||||||||||||||||||||||||||||||||||
seq2  AGGAACAGAGTCAAAAGACAAAAGGATTGAATTC  1080


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