BAC Information

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BAC

Clone NameB6Ng01-318N21
Chromosome11 (Build37)
Map Location 61,952,196 - 62,093,005
singlet/doubletdoublet
Overlap geneSpecc1, Adora2b, 2410012H22Rik
Upstream geneTnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
Downstream geneTtc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318N21.bB6Ng01-318N21.g
ACCGA108647GA108648
length1,129871
definitionB6Ng01-318N21.b B6Ng01-318N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,952,196 - 61,953,328)(62,092,366 - 62,093,005)
sequence
acttgcagcaaaataagaagccatctgtgtggtgccttagaccagagaag
ttaaagatctgctcctaacattgaggcttccttgagcctttttaaagctg
cagtctcatttcattacctcatttgaacctgcccctaagctttggttggt
ttctagagtctctgatgggctaactataagcacgtttggttgatgataaa
ggatgtagttaggtgacaatgtcagtagaaacccaacaaactaatgaaga
acaacttacaacaaaagcctcacaaatgaaactcaccctggaaacttaaa
gactttcaatgcagaagctcacagctcacagtggtctgaaatgcaggaag
tgatttgacttttggaaatgtgtatatatatatatatgtatgtgaagacc
tgtatctgactcagcaaacccatcaggcaaaaacctacggcacgtctcct
gtgagaggcggcgccagagaagatctacctactgtacttcccatgtgagg
acaacgccaatgaaaacctattgcttgtctcgtgtgagggcagctcagtg
aaaatctaccaggctcctcttgtgaggggcagttccagtgtgtccatgta
gggttctagctacatcgttctagaagatatgagttaatctctaataaaag
gaaaattaagactgggggattattcttaaactcaggaagacattttgagg
tattgactttgagagcacagatttagcttgaaatgagaaagaaaagacat
tgatatcttctgtaaaaatcatgtagaaacgagctgggcttgtccaaata
ggactataatttgtgttctgaaagaccttttcttcagattgagaattcta
agatgacttaaaatttgtgtgccaaatttttttgatatataaacaaagag
aaagacgcaactttcaacttcaagtgcacagcgatatttgcagtatgtat
caatctgtcttctctggggtactattgaatgttttcaacatctgtttatg
atatgctaaataaatgttatttagaagagtctgtggattgaattttattc
actgattgctttcctggaggctcgtattgaattttgtttggaacttagct
tcattaattaccaggctgggtatggaacc
gaattctcttttcccagtttgggtcttgtgttagcacatcctacagttta
ctttcctcttgttgatccacttgtgtattgttacctgtcttattgtatgc
agtacacacctcagtaggtttctgaagaaggcatgaactatgcttttgcg
gctttgaatgtctgaaaaaggtttttctgctctcacgcttggttaaaagg
tgttgagggcggccagcggcccacatgtctgagttctagcctgggaggca
tcttggaatctggaagaaaagagggaactaggcggcacgagaaaggatgg
aaccaagacattagtctgatcaaggttcaattttactatttggagacacg
gggttatgaagaagggggaggggcccattcccgccaaatcatccttggag
tccagtttcaggtgaccatgtgttggctctggaacagctaggtggcaggt
agtagcagtgggagtggcagaacgatagggtggcaggcttcatccccatg
ctctcttagtgctaacagtcaaacctgatcagccagatttcaggctgggg
ggggggggttacaaaaaggtattaagtttcatgttggaaatagcatatct
tcagacctctgaaaacattgtcccataattgtctagcattttgtatctag
catttgctcctgaattttgtcggtggcttttattttctctgggtctttga
attgcagttgctcctaggtatccatgatggttaagatttgcttgatgtac
agtcccctttggtaggatgggcatgtgacccatatttcaccttcctttgt
actttaatttatgtatatgattacactgtagctgtacagatggttgttag
cctttcattgtggttgttggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_61952196_61953328
seq2: B6Ng01-318N21.b_56_1184

seq1  ACTTGCAGCAAAATAAGAAGCCATCTGTGTGGTGCCTTAGACCAGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAGCAAAATAAGAAGCCATCTGTGTGGTGCCTTAGACCAGAGAAG  50

seq1  TTAAAGATCTGCTCCTAACATTGAGGCTTCCTTGAGCCTTTTTAAAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATCTGCTCCTAACATTGAGGCTTCCTTGAGCCTTTTTAAAGCTG  100

seq1  CAGTCTCATTTCATTACCTCATTTGAACCTGCCCCTAAGCTTTGGTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCATTTCATTACCTCATTTGAACCTGCCCCTAAGCTTTGGTTGGT  150

seq1  TTCTAGAGTCTCTGATGGGCTAACTATAAGCACGTTTGGTTGATGATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGTCTCTGATGGGCTAACTATAAGCACGTTTGGTTGATGATAAA  200

seq1  GGATGTAGTTAGGTGACAATGTCAGTAGAAACCCAACAAACTAATGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAGTTAGGTGACAATGTCAGTAGAAACCCAACAAACTAATGAAGA  250

seq1  ACAACTTACAACAAAAGCCTCACAAATGAAACTCACCCTGGAAACTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTACAACAAAAGCCTCACAAATGAAACTCACCCTGGAAACTTAAA  300

seq1  GACTTTCAATGCAGAAGCTCACAGCTCACAGTGGTCTGAAATGCAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCAATGCAGAAGCTCACAGCTCACAGTGGTCTGAAATGCAGGAAG  350

seq1  TGATTTGACTTTTGGAAATGTGTATATATATATATATGTATGTGAAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGACTTTTGGAAATGTGTATATATATATATATGTATGTGAAGACC  400

seq1  TGTATCTGACTCAGCAAACCCATCAGGCAAAAACCTACGGCACGTCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGACTCAGCAAACCCATCAGGCAAAAACCTACGGCACGTCTCCT  450

seq1  GTGAGAGGCGGCGCCAGAGAAGATCTACCTACTGTACTTCCCATGTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGCGGCGCCAGAGAAGATCTACCTACTGTACTTCCCATGTGAGG  500

seq1  ACAACGCCAATGAAAACCTATTGCTTGTCTCGTGTGAGGGCAGCTCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGCCAATGAAAACCTATTGCTTGTCTCGTGTGAGGGCAGCTCAGTG  550

seq1  AAAATCTACCAGGCTCCTCTTGTGAGGGGCAGTTCCAGTGTGTCCATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTACCAGGCTCCTCTTGTGAGGGGCAGTTCCAGTGTGTCCATGTA  600

seq1  GGGTTCTAGCTACATCGTTCTAGAAGATATGAGTTAATCTCTAATAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTAGCTACATCGTTCTAGAAGATATGAGTTAATCTCTAATAAAAG  650

seq1  GAAAATTAAGACT-GGGGATTATTCTTAAACTCAGGAAGACATTTTGAGG  699
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAAGACTGGGGGATTATTCTTAAACTCAGGAAGACATTTTGAGG  700

seq1  TATTGACTTTGAGAGCACAGATTTAGCTTGAAATGAGAAAGAAAAGACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTTTGAGAGCACAGATTTAGCTTGAAATGAGAAAGAAAAGACAT  750

seq1  TGATATCTTCTGTAAAAATCATGTAGAAACGAGCTGGGCTTGTCCAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTTCTGTAAAAATCATGTAGAAACGAGCTGGGCTTGTCCAAATA  800

seq1  GGACTATAATTTGTGTTCTGAAAGACCTTTTCTTCAGATTGAGAATTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATAATTTGTGTTCTGAAAGACCTTTTCTTCAGATTGAGAATTCTA  850

seq1  AGATGACTTAAAATTTGTGTGCCAAA-TTTTTTGATATATAAACAAAGAG  898
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGATGACTTAAAATTTGTGTGCCAAATTTTTTTGATATATAAACAAAGAG  900

seq1  AAAGACGCAAC-TTCAACTTCAAGTGCACAGCGATATTTGCAGTTATGTA  947
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  AAAGACGCAACTTTCAACTTCAAGTGCACAGCGATATTTGCAG-TATGTA  949

seq1  TCAATCTGTCTTTCCTCT-GGGTACTATTGAATGTTTTCAACATCTGTTT  996
      ||||||||||||  |||| |||||||||||||||||||||||||||||||
seq2  TCAATCTGTCTT--CTCTGGGGTACTATTGAATGTTTTCAACATCTGTTT  997

seq1  ATGATATGCTAAATAAATGTTATTTAGAAGAGTCTGTGGTTTGAATTTTA  1046
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGATATGCTAAATAAATGTTATTTAGAAGAGTCTGTGGATTGAATTTTA  1047

seq1  ATCACTGGTTGCCTTTCTGGAGGGCTCGTA-TGAATTTTGTTTGAAACTT  1095
       |||||| |||| || ||||| |||||||| ||||||||||||| ||| |
seq2  TTCACTGATTGCTTTCCTGGA-GGCTCGTATTGAATTTTGTTTGGAAC-T  1095

seq1  TTGCTTCATTATAATTTTACAAGGCTGGGAATGGAACC  1133
      | |||||||||     |||| |||||||| ||||||||
seq2  TAGCTTCATTA----ATTACCAGGCTGGGTATGGAACC  1129

seq1: chr11_62092366_62093005
seq2: B6Ng01-318N21.g_292_939 (reverse)

seq1  CCCAACAACCAC-ATG-AAGGCTAACAACCATCTGTACAGCTACAGTGTA  48
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  CCCAACAACCACAATGAAAGGCTAACAACCATCTGTACAGCTACAGTGTA  50

seq1  CTCATATACATAAAATAAAGTACAAAGGAAGGTG-AATATGGGTCACATG  97
       ||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  ATCATATACATAAATTAAAGTACAAAGGAAGGTGAAATATGGGTCACATG  100

seq1  -CCATCCTACCAAA-GGGACTGTACATC-AGC-AATCTTAACCATCATGG  143
       ||||||||||||| ||||||||||||| ||| |||||||||||||||||
seq2  CCCATCCTACCAAAGGGGACTGTACATCAAGCAAATCTTAACCATCATGG  150

seq1  ATACCTAGGAGCAACTGCAATTCAAAGACCCAGAGAAAATAAAAGCCACC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAGGAGCAACTGCAATTCAAAGACCCAGAGAAAATAAAAGCCACC  200

seq1  GACAAAATTCAGGAGC-AATGCTAGATACAAAATGCTAGACAATTATGGG  242
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GACAAAATTCAGGAGCAAATGCTAGATACAAAATGCTAGACAATTATGGG  250

seq1  ACAATGTTTTCAGAGGTCTGAAGATATGCTATTTCCAACATGAAACTTAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTTTCAGAGGTCTGAAGATATGCTATTTCCAACATGAAACTTAA  300

seq1  TACCTTTTTGTAACCCCCCCCCCCCAGCCTGAAATCTGGCTGATCAGGTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTTGTAACCCCCCCCCCCCAGCCTGAAATCTGGCTGATCAGGTT  350

seq1  TGACTGTTAGCACTAAGAGAGCATGGGGATGAAGCCTGCCACCCTATCGT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTAGCACTAAGAGAGCATGGGGATGAAGCCTGCCACCCTATCGT  400

seq1  TCTGCCACTCCCACTGCTACTACCTGCCACCTAGCTGTTCCAGAGCCAAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACTCCCACTGCTACTACCTGCCACCTAGCTGTTCCAGAGCCAAC  450

seq1  ACATGGTCACCTGAAACTGGACTCCAAGGATGATTTGGCGGGAATGGGCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTCACCTGAAACTGGACTCCAAGGATGATTTGGCGGGAATGGGCC  500

seq1  CCTCCCCCTTCTTCATAACCCCGTGTCTCCAAATAGTAAAATTGAACCTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCTTCTTCATAACCCCGTGTCTCCAAATAGTAAAATTGAACCTT  550

seq1  GATCAGACTAATGTCTTGGTTCCATCCTTTCTCGTGCCGCCTAGTTCCCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGACTAATGTCTTGGTTCCATCCTTTCTCGTGCCGCCTAGTTCCCT  600

seq1  CTTTTCTTCCAGATTCCAAGATGCCTCCCAGGCTAGAACTCAGACATG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTCCAGATTCCAAGATGCCTCCCAGGCTAGAACTCAGACATG  648