BAC Information

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BAC

Clone NameB6Ng01-319L05
Chromosome11 (Build37)
Map Location 101,309,730 - 101,429,850
singlet/doubletdoublet
Overlap geneIfi35, Vat1, Rnd2, Brca1, Nbr1
Upstream geneKlhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27
Downstream geneTmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319L05.bB6Ng01-319L05.g
ACCGA109265GA109266
length1,0901,152
definitionB6Ng01-319L05.b B6Ng01-319L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,428,760 - 101,429,850)(101,309,730 - 101,310,896)
sequence
gaattccataaatgaatcttcctgtggagtttaagctgctttttaagctc
tttgacctctgccttccgctgtttcttctcagcccgcaacctttgctttt
ctgctttcacaaagttcttgtccacctgtttttggagcctgtgggataat
gaatgaatgccttgaaacatttggcactgcaatcatgtcaacaatgcatc
tagtttctttcttttcttttctttttttaaaaaagattttatttatttat
gttatgtgagtacattgttgctgcctttagacacaccagaagaaggcatc
agatcccattacagatagttgtgagccaccatgtggttgccaggaattga
acttaggacctttggaagagcagtgagtactcttaacatctgagccatct
ctccagcccagcatctactttcttaatttctttcatactcatcatttcca
tttgatgagtctcagacaattgtttcattacacatcaattgagaaggaac
aaggagactattaataattttgtgatactatacactaccattgcactctt
cttttgctatgagactgactcactacatagcttagcctggctaagactca
ggatggttctgagtgctggggattacatctgattttttttttctcttgag
ataaggtttctttttgtgtcctggaacttgctctgcagaacaggttggcc
tcgaactcacagagatctggctgcctctgtcttgtgagtgctaggattaa
aggcatcttgccagatttttaagatagatttatttatttttaattcatgt
gtatgagtgtacacgtgtgcctgatgctcacaaaagccagaaacgtgtgt
cagatcgcctggaactggagttcagactgttgtgagctgccaaagtagat
gttgggaagtgaaccaaaggtcttgggtaaaagcagcctgtgctcttacc
atgagacacctcttcagcccactcagatatttcttttctttttttttttt
ttttagatttaatttattattaatttatatatgtagttacattgaagctg
tctcagaacacttcagagaggggtcagatccttggttacg
gaattcacagaaatgaaagtggaagtgaggccggcaagcaagcaacagca
gtggaagtgtgtttcagacgctgctggaggctgaggagaccagagccacc
tctgaggggtcaaagagtttagtccttcagaactcttcactgccaaccct
gctctgaagccccagcttctgccagacgtgagagccatgtctgtgaccct
gcaaactgtaagtacgggagcaggggagcatttgtcgcatgtggggaggg
gcgggaacacagtgttctaggcttagacctgctcggctcaagcctgctaa
gggtggaagagaagtagagcgcttagggtaccttggtctgtggatcttgt
catttacctattgtcaaaaccaggactctgacacctaaagtaaggacctt
gatcattctttttggtttttcgagacggggtttctctgtttagccctggc
tgtcctggaactcactctggagaccaggctggcctcgaactcagaaatct
gcctgcctgtgcctcccaagtgctgggattaaaggtgtgcgccaccactg
cccggccttgatctttctttatgtggatgtatgcttcagggttgtagaga
gctgtaagcatcaaaggtttctggctattctaaacagcaaagggaatact
ctgaggtacttcccagccaaaaactcctcccctcagaatgccatgtcaac
ctgaccattggtcctctctgggacaggtggtctttctaagtgcctctgac
tgaggccacctcagataggctaggttgagctgtgaagtctgcctgccaac
agccagtgaggcctcagaggaagcacagtgggcagccaccttcgaggagg
gatccaatgcagcttgtcctcagcagctctgcctccccttgttagtcttc
tggcacggaaaacttcatttatctcccagatacaataaaaaaaggagcga
tttggagccaaataaggaaaagcattattgagagccaacctgcctggttt
cagatcctagtttcttcagacatgtgcactgaccaaacattagcttttct
aaagttgacagtctaattccttcacttactatgtagatataccacttcct
taccaagaacttaagcaaaggcttaggagctagctcagtctaactgctac
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101428760_101429850
seq2: B6Ng01-319L05.b_51_1140 (reverse)

seq1  CGTAAC--AAGATCTGACCCCCTCTTCTGGAGTG-TCTGAAGACAGCTAC  47
      ||||||  | ||||||| |||||| |||| |||| |||| |||||||| |
seq2  CGTAACCAAGGATCTGA-CCCCTC-TCTGAAGTGTTCTG-AGACAGCTTC  47

seq1  AATGTACTTACATATAATAAATAAATAAATAAATAAATCTTTAAAAAAAA  97
      ||||||  ||||||| |||||| |||||  || |||||||  ||||||||
seq2  AATGTAACTACATAT-ATAAATTAATAATAAATTAAATCTAAAAAAAAAA  96

seq1  AAAAAGAAAAAGAAAATATCTGAGTGGGCTGAAGAGGTGTCTCATGGTAA  147
      |||||  ||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAG-AAATATCTGAGTGGGCTGAAGAGGTGTCTCATGGTAA  145

seq1  GAGCACAGGCTGCTTTTACCAAAGACC-TTGGTTCACTTCCCAACATCTA  196
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  GAGCACAGGCTGCTTTTACCCAAGACCTTTGGTTCACTTCCCAACATCTA  195

seq1  CTTTGGCAGCTCACAACAGTCTGAACTCCAGTTCCAGGCGATCTGACACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCAGCTCACAACAGTCTGAACTCCAGTTCCAGGCGATCTGACACA  245

seq1  CGTTTCTGGCTTTTGTGAGCATCAGGCACACGTGTACACTCATACACATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCTGGCTTTTGTGAGCATCAGGCACACGTGTACACTCATACACATG  295

seq1  AATTAAAAATAAATAAATCTATCTTAAAAATCTGGCAAGATGCCTTTAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAATAAATAAATCTATCTTAAAAATCTGGCAAGATGCCTTTAAT  345

seq1  CCTAGCACTCACAAGACAGAGGCAGCCAGATCTCTGTGAGTTCGAGGCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACTCACAAGACAGAGGCAGCCAGATCTCTGTGAGTTCGAGGCCA  395

seq1  ACCTGTTCTGCAGAGCAAGTTCCAGGACACAAAAAGAAACCTTATCTCAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTCTGCAGAGCAAGTTCCAGGACACAAAAAGAAACCTTATCTCAA  445

seq1  GAGAAAAAAAAAATCAGATGTAATCCCCAGCACTCAGAACCATCCTGAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAAAAAATCAGATGTAATCCCCAGCACTCAGAACCATCCTGAGT  495

seq1  CTTAGCCAGGCTAAGCTATGTAGTGAGTCAGTCTCATAGCAAAAGAAGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCAGGCTAAGCTATGTAGTGAGTCAGTCTCATAGCAAAAGAAGAG  545

seq1  TGCAATGGTAGTGTATAGTATCACAAAATTATTAATAGTCTCCTTGTTCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGGTAGTGTATAGTATCACAAAATTATTAATAGTCTCCTTGTTCC  595

seq1  TTCTCAATTGATGTGTAATGAAACAATTGTCTGAGACTCATCAAATGGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATTGATGTGTAATGAAACAATTGTCTGAGACTCATCAAATGGAA  645

seq1  ATGATGAGTATGAAAGAAATTAAGAAAGTAGATGCTGGGCTGGAGAGATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGTATGAAAGAAATTAAGAAAGTAGATGCTGGGCTGGAGAGATG  695

seq1  GCTCAGATGTTAAGAGTACTCACTGCTCTTCCAAAGGTCCTAAGTTCAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGATGTTAAGAGTACTCACTGCTCTTCCAAAGGTCCTAAGTTCAAT  745

seq1  TCCTGGCAACCACATGGTGGCTCACAACTATCTGTAATGGGATCTGATGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAACCACATGGTGGCTCACAACTATCTGTAATGGGATCTGATGC  795

seq1  CTTCTTCTGGTGTGTCTAAAGGCAGCAACAATGTACTCACATAACATAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTGGTGTGTCTAAAGGCAGCAACAATGTACTCACATAACATAAA  845

seq1  TAAATAAAATCTTTTTTAAAAAAAGAAAAGAAAAGAAAGAAACTAGATGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATCTTTTTTAAAAAAAGAAAAGAAAAGAAAGAAACTAGATGC  895

seq1  ATTGTTGACATGATTGCAGTGCCAAATGTTTCAAGGCATTCATTCATTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGACATGATTGCAGTGCCAAATGTTTCAAGGCATTCATTCATTAT  945

seq1  CCCACAGGCTCCAAAAACAGGTGGACAAGAACTTTGTGAAAGCAGAAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGCTCCAAAAACAGGTGGACAAGAACTTTGTGAAAGCAGAAAAG  995

seq1  CAAAGGTTGCGGGCTGAGAAGAAACAGCGGAAGGCAGAGGTCAAAGAGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTTGCGGGCTGAGAAGAAACAGCGGAAGGCAGAGGTCAAAGAGCT  1045

seq1  TAAAAAGCAGCTTAAACTCCACAGGAAGATTCATTTATGGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCAGCTTAAACTCCACAGGAAGATTCATTTATGGAATTC  1090

seq1: chr11_101309730_101310896
seq2: B6Ng01-319L05.g_70_1221

seq1  GAATTCACAGAAATGAAAGTGGAAGTGAGGCCGGCAAGCAAGCAACAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAATGAAAGTGGAAGTGAGGCCGGCAAGCAAGCAACAGCA  50

seq1  GTGGAAGTGTGTTTCAGACGCTGCTGGAGGCTGAGGAGACCAGAGCCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGTGTGTTTCAGACGCTGCTGGAGGCTGAGGAGACCAGAGCCACC  100

seq1  TCTGAGGGGTCAAAGAGTTTAGTCCTTCAGAACTCTTCACTGCCAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGGTCAAAGAGTTTAGTCCTTCAGAACTCTTCACTGCCAACCCT  150

seq1  GCTCTGAAGCCCCAGCTTCTGCCAGACGTGAGAGCCATGTCTGTGACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAAGCCCCAGCTTCTGCCAGACGTGAGAGCCATGTCTGTGACCCT  200

seq1  GCAAACTGTAAGTACGGGAGCAGGGGAGCATTTGTCGCATGTGGGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGTAAGTACGGGAGCAGGGGAGCATTTGTCGCATGTGGGGAGGG  250

seq1  GCGGGAACACAGTGTTCTAGGCTTAGACCTGCTCGGCTCAAGCCTGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAACACAGTGTTCTAGGCTTAGACCTGCTCGGCTCAAGCCTGCTAA  300

seq1  GGGTGGAAGAGAAGTAGAGCGCTTAGGGTACCTTGGTCTGTGGATCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAAGAGAAGTAGAGCGCTTAGGGTACCTTGGTCTGTGGATCTTGT  350

seq1  CATTTACCTATTGTCAAAACCAGGACTCTGACACCTAAAGTAAGGACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCTATTGTCAAAACCAGGACTCTGACACCTAAAGTAAGGACCTT  400

seq1  GATCATTCTTTTTGGTTTTTCGAGACGGGGTTTCTCTGTTTAGCCCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTCTTTTTGGTTTTTCGAGACGGGGTTTCTCTGTTTAGCCCTGGC  450

seq1  TGTCCTGGAACTCACTCTGGAGACCAGGCTGGCCTCGAACTCAGAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCACTCTGGAGACCAGGCTGGCCTCGAACTCAGAAATCT  500

seq1  GCCTGCCTGTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTGTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTG  550

seq1  CCCGGCCTTGATCTTTCTTTATGTGGATGTATGCTTCAGGGTTGTAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCCTTGATCTTTCTTTATGTGGATGTATGCTTCAGGGTTGTAGAGA  600

seq1  GCTGTAAGCATCAAAGGTTTCTGGCTATTCTAAACAGCAAAGGGAATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAGCATCAAAGGTTTCTGGCTATTCTAAACAGCAAAGGGAATACT  650

seq1  CTGAGGTACTTCCCAGCCAAAAACTCCTCCCCTCAGAATGCCATGTCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTACTTCCCAGCCAAAAACTCCTCCCCTCAGAATGCCATGTCAAC  700

seq1  CTGACCATTGGTCCTCTCTGGGACAGGTGGTCTTTCTAAGTGCCTCTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATTGGTCCTCTCTGGGACAGGTGGTCTTTCTAAGTGCCTCTGAC  750

seq1  TGAGGCCACCTCAGATAGGCTAGGTTGAGCTGTGAAGTCTGCCTGCCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCACCTCAGATAGGCTAGGTTGAGCTGTGAAGTCTGCCTGCCAAC  800

seq1  AGCCAGTGAGGCCTCAGGAGGAAGCACAGTGGGCAGCCACCTTCGAGGAG  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCCAGTGAGGCCTCA-GAGGAAGCACAGTGGGCAGCCACCTTCGAGGAG  849

seq1  GGATCCAATGCAGCTTGTCCTCAGCAGCTCTGCCTCCCCTTGTTAGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAATGCAGCTTGTCCTCAGCAGCTCTGCCTCCCCTTGTTAGTCTT  899

seq1  CTGGCACGGAAAACTTCCATTTATCTCCCAGATACAATAAAAAAAGGGAG  950
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  CTGGCACGGAAAACTT-CATTTATCTCCCAGATACAATAAAAAAA-GGAG  947

seq1  CGATTTGGAGCCAAATAAGGAAAAAGCAATATTGAAGAGCCAACCTGCCT  1000
      |||||||||||||||||||| ||||||| ||||| |||||||||||||||
seq2  CGATTTGGAGCCAAATAAGG-AAAAGCATTATTG-AGAGCCAACCTGCCT  995

seq1  GGTTTCAGATCCTAGTTTCTTCAGACATGTTGCACTGGACCAAACATTAG  1050
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  GGTTTCAGATCCTAGTTTCTTCAGACATG-TGCACT-GACCAAACATTAG  1043

seq1  CTTTTCTAAAGTTGACAGTCTAATCCCTTCACTTACTATGTAGGGATATT  1100
      |||||||||||||||||||||||| |||||||||||||||||  ||||| 
seq2  CTTTTCTAAAGTTGACAGTCTAATTCCTTCACTTACTATGTA--GATATA  1091

seq1  ACACTTCTTCACAAAGATACCTAGAGGGAAGGCTAGAGAGCTAGCTCAGT  1150
       |||||| | || |||| || || ||  ||||||   |||||||||||||
seq2  CCACTTCCTTACCAAGA-ACTTA-AGCAAAGGCTTAGGAGCTAGCTCAGT  1139

seq1  CTATAAACTGCTTACCT  1167
      ||   |||||| |||||
seq2  CT---AACTGC-TACCT  1152