BAC Information

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BAC

Clone NameB6Ng01-320A02
Chromosome11 (Build37)
Map Location 23,242,963 - 23,431,355
singlet/doubletdoublet
Overlap geneAhsa2, 1700093K21Rik
Upstream geneLOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202
Downstream geneA730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320A02.bB6Ng01-320A02.g
ACCGA109495GA109496
length1,0031,094
definitionB6Ng01-320A02.b B6Ng01-320A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,430,716 - 23,431,355)(23,242,963 - 23,244,056)
sequence
gaattcttggggccctccgcactggggaccctttttagactcggggcagc
tatagaacccatagcttcggacctggttggggggtggtacttgcgactgc
agaattaatttggcagaaacaaaagtataggggcagccatcacatctctg
ggggtgccacctttgaaatggcaaaaacgacttctcctgtttcagataac
actcgccaagtcagcttctgcagggcgtggggattatagctagccttgct
catcagtcttgtcccttctgcgacgaaaacacagcttaagagagtcatcc
gtagtttctaggtcccattcatttttagagggtggtaccttcatgaggtg
tgaagcatgaatccaagcagcaataccctctactttcacagcagtggggg
tagtcaacagtaccaaatagggtcccttccaccgtggttccaagtttcca
gtacagtgtcttcagacatagacagcgtctccaacttggaacgagtggag
tatggctaggtcttgggtttgtaggcttcgggaattaaaccccaggcctc
ctttctcacagtttccagagcctttaagtgagcaaagtttagacaatgca
gcatcaggatcatggactcctcctgactcagtgaggggagaagaagactg
agagactgggtgtaatacccaggtaggatccccacctttcaacagctcta
cctattcaaccccttaattatatgcttagacaacctatagtaaaagtgca
aaactaaggaaaagctcgtcagagcctacttttaacttgcagcattaaac
ttaaaatgtgcatatcatggttcatgtcacatttacctagagattaatga
atttctattcttgacgactttgaagaaaaggcaagtggaaattcataaat
atgcattcacttaaccctccgctgatgtgaaggagagatgattaatttaa
atgtgttctctaattatttatctaccccaccagggaacagtactgtggtg
aat
gaattcaaggccattctgggcttcaacactgagacactatctccaaaaaa
aaggaaaaaagagaaaaaagttaggggtgtggttcaattgtagaatactt
gtctgacactttgccaggtactgtgaaagaagcttaggcagaaagaggaa
aacagtgtacagtgtgttctactggaaaggcttctgtagaaggctttaag
aatccttcagacctgagatactgtaacttcagtaggggaagttgctattg
atggctgtaagatacactcttgagattttataatatcacttttagaaaat
ttttgtttttagaccatcatttaataatggtctaatactttttttttttt
taattaggatatatcgacacaagaaagtaacatattaggggcattctgtg
atatgaatgtaagtatttttttatattctaaggtttatgaaatttgtttt
atcttttgagtttttacatctgatagtaaatcagtgttgctcataaactg
aaaatgattacttataaatttaaaaggatacacctttgttttttacagga
tgtagaagtacccttgcatttgcttcgttatgtctgtctgttttgtggga
aaaaatggcctttctctcatgaaggattgctttgaatatgggactcctga
gacgttaccatttcttatagcacatgcatttattaccgctgtttctaatg
taagtattgtttggaattattctttaacttttttagcataatgtctgcat
ttcaatgtcatgaactttttttggccagaaattgcacgttttgatttaat
ttttgcataagttgaaaaactacatatgtaaagtctatttttaaaatggc
accacatttatactgtgaattaaaattaatcaacttttaaatttaaaagt
aggtaaagggttgctcttacctctttttatataaaagcaaaggtagtagc
ttgtgttgaaatttacctttgtctaggattttgtcctgggaaacctttat
tttattatttatttcggtttttgagtcactttttatacttgcacataaac
cctcattggttgcatttaaacctcacttaactgcttatctttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_23430716_23431355
seq2: B6Ng01-320A02.b_40_679 (reverse)

seq1  CTCCCCTCACTGAGTCAGGAGGAGTCCATGATCCTGATGCTGCATTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCACTGAGTCAGGAGGAGTCCATGATCCTGATGCTGCATTGTCT  50

seq1  AAACTTTGCTCACTTAAAGGCTCTGGAAACTGTGAGAAAGGAGGCCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGCTCACTTAAAGGCTCTGGAAACTGTGAGAAAGGAGGCCTGGG  100

seq1  GTTTAATTCCCGAAGCCTACAAACCCAAGACCTAGCCATACTCCACTCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTCCCGAAGCCTACAAACCCAAGACCTAGCCATACTCCACTCGT  150

seq1  TCCAAGTTGGAGACGCTGTCTATGTCTGAAGACACTGTACTGGAAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTTGGAGACGCTGTCTATGTCTGAAGACACTGTACTGGAAACTTG  200

seq1  GAACCACGGTGGAAGGGACCCTATTTGGTACTGTTGACTACCCCCACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACGGTGGAAGGGACCCTATTTGGTACTGTTGACTACCCCCACTGC  250

seq1  TGTGAAAGTAGAGGGTATTGCTGCTTGGATTCATGCTTCACACCTCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGTAGAGGGTATTGCTGCTTGGATTCATGCTTCACACCTCATGA  300

seq1  AGGTACCACCCTCTAAAAATGAATGGGACCTAGAAACTACGGATGACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCACCCTCTAAAAATGAATGGGACCTAGAAACTACGGATGACTCT  350

seq1  CTTAAGCTGTGTCTTCGTCGCAGAAGGGACAAGACTGATGAGCAAGGCTA  400
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCTGTGTTTTCGTCGCAGAAGGGACAAGACTGATGAGCAAGGCTA  400

seq1  GCTATAATCCCCACGCCCTGCAGAAGCTGACTTGGCGAGTGTTATCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATCCCCACGCCCTGCAGAAGCTGACTTGGCGAGTGTTATCTGAA  450

seq1  ACAGGAGAAGTCGTTTTTGCCATTTCAAAGGTGGCACCCCCAGAGATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAAGTCGTTTTTGCCATTTCAAAGGTGGCACCCCCAGAGATGTG  500

seq1  ATGGCTGCCCCTATACTTTTGTTTCTGCCAAATTAATTCTGCAGTCGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCCCCTATACTTTTGTTTCTGCCAAATTAATTCTGCAGTCGCAA  550

seq1  GTACCACCCCCCAACCAGGTCCGAAGCTATGGGTTCTATAGCTGCCCCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACCCCCCAACCAGGTCCGAAGCTATGGGTTCTATAGCTGCCCCGA  600

seq1  GTCTAAAAAGGGTCCCCAGTGTGGAGGGCCCCAAGAATTC  640
      ||||||||||||||||||||| ||||||||||||||||||
seq2  GTCTAAAAAGGGTCCCCAGTGCGGAGGGCCCCAAGAATTC  640

seq1: chr11_23242963_23244056
seq2: B6Ng01-320A02.g_68_1161

seq1  GAATTCAAGGCCATTCTGGGCTTCAACAGTGAGACACTATCTCCAAAAAA  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCAAGGCCATTCTGGGCTTCAACACTGAGACACTATCTCCAAAAAA  50

seq1  AAGGAAAAAAGAGAAAAAAGTTAGGGGTGTGGTTCAATTGTAGAATACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAGAGAAAAAAGTTAGGGGTGTGGTTCAATTGTAGAATACTT  100

seq1  GTCTGACACTTTGCCAGGTACTGTGAAAGAAGCTTAGGCAGAAAGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACACTTTGCCAGGTACTGTGAAAGAAGCTTAGGCAGAAAGAGGAA  150

seq1  AACAGTGTACAGTGTGTTCTACTGGAAAGGCTTCTGTAGAAGGCTTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTACAGTGTGTTCTACTGGAAAGGCTTCTGTAGAAGGCTTTAAG  200

seq1  AATCCTTCAGACCTGAGATACTGTAACTTCAGTAGGGGAAGTTGCTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCAGACCTGAGATACTGTAACTTCAGTAGGGGAAGTTGCTATTG  250

seq1  ATGGCTGTAAGATACACTCTTGAGATTTTATAAGATCACTTTTAGAAAAT  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGGCTGTAAGATACACTCTTGAGATTTTATAATATCACTTTTAGAAAAT  300

seq1  TTTTGTTTTTAGACCATCATTTAATAATGGTCTAATACTTTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTAGACCATCATTTAATAATGGTCTAATACTTTTTTTTTTTT  350

seq1  TAATTAGGATATATCGACACAAGAAAGTAACATATTAGGGGCATTCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGGATATATCGACACAAGAAAGTAACATATTAGGGGCATTCTGTG  400

seq1  ATATGAATGTAAGTATTTTTTTATATTCTAAGGTTTATGAAATTTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATGTAAGTATTTTTTTATATTCTAAGGTTTATGAAATTTGTTTT  450

seq1  ATCTTTTGAGTTTTTACATCTGATAGTAAATCAGTGTTGCTCATAAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGAGTTTTTACATCTGATAGTAAATCAGTGTTGCTCATAAACTG  500

seq1  AAAATGATTACTTATAAATTTAAAAGGATACACCTTTGTTTTTTACAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATTACTTATAAATTTAAAAGGATACACCTTTGTTTTTTACAGGA  550

seq1  TGTAGAAGTACCCTTGCATTTGCTTCGTTATGTCTGTCTGTTTTGTGGG-  599
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTAGAAGTACCCTTGCATTTGCTTCGTTATGTCTGTCTGTTTTGTGGGA  600

seq1  AAAAATGGCCTTTCTCTCATGAAGGATTGCTTTGAATATGGGACTCCTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGCCTTTCTCTCATGAAGGATTGCTTTGAATATGGGACTCCTGA  650

seq1  GACGTTACCATTTCTTATAGCACATGCATTTATTACAGTTGTTTCTAATG  699
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  GACGTTACCATTTCTTATAGCACATGCATTTATTACCGCTGTTTCTAATG  700

seq1  TAAGTATTGTTTGGAATTATTCTTTAACTTTTTTAGCATAATGTCTGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTGTTTGGAATTATTCTTTAACTTTTTTAGCATAATGTCTGCAT  750

seq1  TTCAATGTCATGAAATTTTTTTGGCCAGAAATTGCAGGTTTTGATTTAAT  799
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  TTCAATGTCATGAACTTTTTTTGGCCAGAAATTGCACGTTTTGATTTAAT  800

seq1  TTTTGCATAA-TTTAAAAACTAAATATGTAAAGTCTATTTTTAAAA-GGT  847
      |||||||||| || |||||||| ||||||||||||||||||||||| || 
seq2  TTTTGCATAAGTTGAAAAACTACATATGTAAAGTCTATTTTTAAAATGGC  850

seq1  AATAAAATTATAATGTGAA-TAAAATTAGTCAACTTTTAAATTTAAAA-T  895
      |  | | ||||| |||||| |||||||| ||||||||||||||||||| |
seq2  ACCACATTTATACTGTGAATTAAAATTAATCAACTTTTAAATTTAAAAGT  900

seq1  AGGTAAA-GGTTGCTCTTACCTC-TTTTATATAAAAGGCAAAGGTAGGTA  943
      ||||||| ||||||||||||||| |||||||||||| ||||||||| |||
seq2  AGGTAAAGGGTTGCTCTTACCTCTTTTTATATAAAA-GCAAAGGTA-GTA  948

seq1  GCTTGTGTTGAAATTAACCTTTGTCTAGGATTTTGTCCTGGGAAAACTTT  993
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  GCTTGTGTTGAAATTTACCTTTGTCTAGGATTTTGTCCTGGGAAACCTTT  998

seq1  ATTTATTTATTTATTTTGGTTTTTGAGTCACTTTTTATACTTTGCACATA  1043
      ||||  |||||||||| ||||||||||||||||||||||| |||||||||
seq2  ATTTTATTATTTATTTCGGTTTTTGAGTCACTTTTTATAC-TTGCACATA  1047

seq1  AACCTCAATTGGTTGCATTTAAACTTCACTTTAATTTGGCTTAATCTTTA  1093
      ||||   ||||||||||||||||| |||||| | |   |||| |||||||
seq2  AACCCTCATTGGTTGCATTTAAACCTCACTTAACT---GCTT-ATCTTTA  1093

seq1  C  1094
      |
seq2  C  1094