BAC Information

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BAC

Clone NameB6Ng01-320F17
Chromosome11 (Build37)
Map Location 115,712,947 - 115,888,458
singlet/doubletdoublet
Overlap geneLlgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b
Upstream geneGprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54
Downstream geneUnk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320F17.bB6Ng01-320F17.g
ACCGA109746GA109747
length1821,104
definitionB6Ng01-320F17.b B6Ng01-320F17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,888,277 - 115,888,458)(115,712,947 - 115,714,046)
sequence
caggacagccagggctatacagagaaaccctgtctctaaataaataaata
aataaatcttttttttttttaaagaagaaaggaagaaagaaggaaggaag
gaaaggtgtgttagcacagggctttaaccacagcactcagatccctgaga
tggatggatggatggatggatggatggataga
gaattcaaacaggtcaggagcggatgcagaggctgtggagggtgctgctt
actggcttgctcctcatggcttgctcagcctgctttcttgtagaacccag
gaccaccagcctaggggatggcaccacccacagtgggctggactctccca
tatcaaccactagttaagaaaattctctatgggcttgcctacagatcagt
cttatgggggcattttctcaactggggttctctcctctcagatgacgttc
acctgtgtcaaggtgacataaaattagccagcacagtcatcctattattt
ttctgttcctttccctccgtgaaatgctcgaaggtcaggcaagttctcct
cggggaatctcttacttgcgcaaaagtcctcttgggtccaagcagtcaga
tcagcatggttatggccagcccttagcattgatcgagtgagtgtcctgag
agcccgcccttagacctagcccaacttcctgcaggcgcaggcccaggctg
tgaatatcaaggctgagcggacgggcctgcagaacatggagttggcgccc
gtgcaacggaagattgaggctcgctccgcggaggactccttcactggctt
tgtccggaccctctatttcgctgatacctacctgagggacagtgagtagc
cagcctgaggtcagggctgtaggacacatccctggtgggagacactcatg
gcgtgaggccacggagagatgggctctctgccatgaggaagtgggcggat
gggtacttccggtgggaaatcacataggcagagctgctgcccaggaccct
cagagcggtactcattcagttgtaaagacagaaaccagagccagcacctg
gcttgatagccttgctccactgagcactacaagtatggacttacttggga
aacagcacctaaccttttctgggcttcagcttcatgtgccacccagacag
catgtggaagcattaaaaccccctggcctgatttttcctgctggctgtga
gcggtgtctgctgtgtcctgccaaagcagagctgttcctcggttaggatc
accttaagtggaagatctcatggaagctgtgggagtcctttcccaagaag
gctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115888277_115888458
seq2: B6Ng01-320F17.b_52_233 (reverse)

seq1  TCTATCCATCCATCCATCCATCCATCCATCCATCTCAGGGATCTGAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCATCCATCCATCCATCCATCCATCCATCTCAGGGATCTGAGTGC  50

seq1  TGTGGTTAAAGCCCTGTGCTAACACACCTTTCCTTCCTTCCTTCTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTAAAGCCCTGTGCTAACACACCTTTCCTTCCTTCCTTCTTTCTT  100

seq1  CCTTTCTTCTTTAAAAAAAAAAAAGATTTATTTATTTATTTATTTAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCTTTAAAAAAAAAAAAGATTTATTTATTTATTTATTTAGAGA  150

seq1  CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  182
      ||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  182

seq1: chr11_115712947_115714046
seq2: B6Ng01-320F17.g_68_1171

seq1  GAATTCAAACAGGTCAGGAGCGGATGCAGAGGCTGTGGAGGGTGCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGGTCAGGAGCGGATGCAGAGGCTGTGGAGGGTGCTGCTT  50

seq1  ACTGGCTTGCTCCTCATGGCTTGCTCAGCCTGCTTTCTTGTAGAACCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTGCTCCTCATGGCTTGCTCAGCCTGCTTTCTTGTAGAACCCAG  100

seq1  GACCACCAGCCTAGGGGATGGCACCACCCACAGTGGGCTGGACTCTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCAGCCTAGGGGATGGCACCACCCACAGTGGGCTGGACTCTCCCA  150

seq1  TATCAACCACTAGTTAAGAAAATTCTCTATGGGCTTGCCTACAGATCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACCACTAGTTAAGAAAATTCTCTATGGGCTTGCCTACAGATCAGT  200

seq1  CTTATGGGGGCATTTTCTCAACTGGGGTTCTCTCCTCTCAGATGACGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGGGGCATTTTCTCAACTGGGGTTCTCTCCTCTCAGATGACGTTC  250

seq1  ACCTGTGTCAAGGTGACATAAAATTAGCCAGCACAGTCATCCTATTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTCAAGGTGACATAAAATTAGCCAGCACAGTCATCCTATTATTT  300

seq1  TTCTGTTCCTTTCCCTCCGTGAAATGCTCGAAGGTCAGGCAAGTTCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCCTTTCCCTCCGTGAAATGCTCGAAGGTCAGGCAAGTTCTCCT  350

seq1  CGGGGAATCTCTTACTTGCGCAAAAGTCCTCTTGGGTCCAAGCAGTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAATCTCTTACTTGCGCAAAAGTCCTCTTGGGTCCAAGCAGTCAGA  400

seq1  TCAGCATGGTTATGGCCAGCCCTTAGCATTGATCGAGTGAGTGTCCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGGTTATGGCCAGCCCTTAGCATTGATCGAGTGAGTGTCCTGAG  450

seq1  AGCCCGCCCTTAGACCTAGCCCAACTTCCTGCAGGCGCAGGCCCAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGCCCTTAGACCTAGCCCAACTTCCTGCAGGCGCAGGCCCAGGCTG  500

seq1  TGAATATCAAGGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGCGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATCAAGGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGCGCCC  550

seq1  GTGCAACGGAAGATTGAGGCTCGCTCCGCGGAGGACTCCTTCACTGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACGGAAGATTGAGGCTCGCTCCGCGGAGGACTCCTTCACTGGCTT  600

seq1  TGTCCGGACCCTCTATTTCGCTGATACCTACCTGAGGGACAGTGAGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGGACCCTCTATTTCGCTGATACCTACCTGAGGGACAGTGAGTAGC  650

seq1  CAGCCTGAGGTCAGGGCTGTAGGACACATCCCTGGTGGGAGACACTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAGGTCAGGGCTGTAGGACACATCCCTGGTGGGAGACACTCATG  700

seq1  GCGTGAGGCCACGGAGAGATGGGCTCTCTGCCATGAGGAAGTGGGCGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGAGGCCACGGAGAGATGGGCTCTCTGCCATGAGGAAGTGGGCGGAT  750

seq1  GGGTACTTCCGGTGGGAAATCACATAGGCAGAGCTGCTGCCCAGGACCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTTCCGGTGGGAAATCACATAGGCAGAGCTGCTGCCCAGGACCCT  800

seq1  CAGAGCGGTACTCATTCAGTTGTAAAGACAGAAACCAGAGCCAGCACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCGGTACTCATTCAGTTGTAAAGACAGAAACCAGAGCCAGCACCTG  850

seq1  GCTTGATAGCCTTGCTCCACTGAGCACTACAAGTATGGACTTACTT-GGA  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCTTGATAGCCTTGCTCCACTGAGCACTACAAGTATGGACTTACTTGGGA  900

seq1  CACAGCACCTAACC-TTTCT-GGCTTCAGCTTCATGTGCCACCCAGACAG  947
       ||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  AACAGCACCTAACCTTTTCTGGGCTTCAGCTTCATGTGCCACCCAGACAG  950

seq1  CATGTGGAAGCATTAAAACCCCCCTGCCTGATTTTTCCCTGCTGGCTGTG  997
      |||||||||||||||||||||||  ||||||||||| |||||||||||||
seq2  CATGTGGAAGCATTAAAACCCCCTGGCCTGATTTTT-CCTGCTGGCTGTG  999

seq1  AGCGGTGTCTGCTGTGTCCCTGCAAAGGCAGAGCTG-TCCTCGGTTTAGG  1046
      ||||||||||||||||| ||||| || ||||||||| ||||||| |||||
seq2  AGCGGTGTCTGCTGTGT-CCTGCCAAAGCAGAGCTGTTCCTCGG-TTAGG  1047

seq1  ATCACC-TAAGTGGAGATTCTCATGAGAG-TGTGGGAGTTCTTTCCC-AG  1093
      |||||| ||||||||   |||||||  || ||||||||| ||||||| ||
seq2  ATCACCTTAAGTGGAAGATCTCATGGAAGCTGTGGGAGTCCTTTCCCAAG  1097

seq1  GAGGCTG  1100
       ||||||
seq2  AAGGCTG  1104