BAC Information

Click to search

BAC

Clone NameB6Ng01-320O12
Chromosome11 (Build37)
Map Location 11,806,297 - 11,932,430
singlet/doubletdoublet
Overlap geneGrb10
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc
Downstream geneCobl, LOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320O12.bB6Ng01-320O12.g
ACCGA110154GA110155
length957658
definitionB6Ng01-320O12.b B6Ng01-320O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,931,474 - 11,932,430)(11,806,297 - 11,806,949)
sequence
gaattcacaaatctgagtgtttttgaatggtaacttaatactgtaataag
tagacattcattcctaccctgtgaaagttattactaaaagtgttttataa
aattatcttcagaccatgtgtacatagatataataaacagatgcatttta
tgtatagacgtgtgtctcattcctaacatagcttaccggtgtataagtaa
tctaaaatccaaaaccaaacaaataaataatctcctgcctaccaaattta
aaacttttagcaatagttttaggagactctgctccaggaaactaataata
accaaaaactactatgagtagagctacttttaaattaaatgtttgcacag
tagcctcatgcctgaggacagtgccctgcactgaatctggggcctgctta
ggaggactgctaccaagaaggtctttgtgttggggtattgggtagaggca
gagccaggtgagttgagagtcttctgagtgtgtctataggttggcttcac
ccagagcctggagagcccttctttccaccttggcttctcctgggccagca
caggctgtggtgtacttttccctgagagcctactggttgccagttctagg
gagctgcttgctctctttcgatgaaaattgtgtggatcttacagaaacca
ctccagaatgttcctagagagatgggaacactatgcgctgtgctgtgcac
ctcctcattgtggtgactgagcacaggaggagggagaaggtgataaaagg
agtgcctcccttccttgttggatcatccctagatatcagttgtgcctggc
ccttctctctttaatttgtagcctgcggggctgcaagtgcacacaggctg
gggcgctgtcccctggctctctggatgactgtgtggagggacacaggctc
agttcctcagttatcagatcagagaaaggcagggggttctttgtttggtt
tggggtt

gaattctcagcttctcctgtaccatgcctacctggatgccaccatgctcc
tgccttgatgataatggactgaacctctgaacctgtaagccagtcctaat
tagatgttgtcttttaatagttgccttggccatggtatctgttcacagca
gtaaaaacctaagacaaggtctttgatccacttcaacttgagttttgtac
agggtgataaatatggatctatttatgttcttctacatgcagaccagaac
catttgttgaagatgctttctttttttctattgggaaatgagaaggagag
ggagagggaggagttggggtagctgaccagtttgtgtttttttgtttgtt
tgtttgtttgtttgtttgttttggtttttcgagacagggtttctctgtat
agctctggctgtcctggaactcactctgtagaccaggctgccctcaaact
cagaaatccgcctgcctctgcctcctgagtgctgggattaaaggcgtgca
ccaccacacccggctgagcagttttttcttatatgccatgttggcttgca
cctggcaggcagaggagcaagctgtgctttggtagctgttgggtggagcc
tagtagaattgcccaacaagcacttctttctgcccttgcattttgcatct
catcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_11931474_11932430
seq2: B6Ng01-320O12.b_52_1008 (reverse)

seq1  AACCCCAAACCAAACAAAGAACCCCCTGCC-TTCTCTGATCTGATAACTG  49
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AACCCCAAACCAAACAAAGAACCCCCTGCCTTTCTCTGATCTGATAACTG  50

seq1  AGGAACTGAGCCTGTGTCCCTCCACACAGTCATCCAGAGAGCCAGGGGAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGAGCCTGTGTCCCTCCACACAGTCATCCAGAGAGCCAGGGGAC  100

seq1  AGCGCCCCAGCCTGTGTGCACTTGCAGCCCCGCAGGCTACAAATTAAAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCCCAGCCTGTGTGCACTTGCAGCCCCGCAGGCTACAAATTAAAGA  150

seq1  GAGAAGGGCCAGGCACAACCTGATATCTAGGGATGATCCAACAAGGAAGG  199
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGAAGGGCCAGGCACAA-CTGATATCTAGGGATGATCCAACAAGGAAGG  199

seq1  GAGGCACTCCTTTTATCACCTTCTCCCTCCTCCTGTGCTCAGTCACCACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACTCCTTTTATCACCTTCTCCCTCCTCCTGTGCTCAGTCACCACA  249

seq1  ATGAGGAGGTGCACAGCACAGCGCATAGTGTTCCCATCTCTCTAGGAACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGGTGCACAGCACAGCGCATAGTGTTCCCATCTCTCTAGGAACA  299

seq1  TTCTGGAGTGGTTTCTGTAAGATCCACACAATTTTCATCGAAAGAGAGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTGGTTTCTGTAAGATCCACACAATTTTCATCGAAAGAGAGCA  349

seq1  AGCAGCTCCCTAGAACTGGCAACCAGTAGGCTCTCAGGGAAAAGTACACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCCCTAGAACTGGCAACCAGTAGGCTCTCAGGGAAAAGTACACC  399

seq1  ACAGCCTGTGCTGGCCCAGGAGAAGCCAAGGTGGAAAGAAGGGCTCTCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGTGCTGGCCCAGGAGAAGCCAAGGTGGAAAGAAGGGCTCTCCA  449

seq1  GGCTCTGGGTGAAGCCAACCTATAGACACACTCAGAAGACTCTCAACTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGGGTGAAGCCAACCTATAGACACACTCAGAAGACTCTCAACTCA  499

seq1  CCTGGCTCTGCCTCTACCCAATACCCCAACACAAAGACCTTCTTGGTAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCTGCCTCTACCCAATACCCCAACACAAAGACCTTCTTGGTAGC  549

seq1  AGTCCTCCTAAGCAGGCCCCAGATTCAGTGCAGGGCACTGTCCTCAGGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCCTAAGCAGGCCCCAGATTCAGTGCAGGGCACTGTCCTCAGGCA  599

seq1  TGAGGCTACTGTGCAAACATTTAATTTAAAAGTAGCTCTACTCATAGTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTACTGTGCAAACATTTAATTTAAAAGTAGCTCTACTCATAGTAG  649

seq1  TTTTTGGTTATTATTAGTTTCCTGGAGCAGAGTCTCCTAAAACTATTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTATTATTAGTTTCCTGGAGCAGAGTCTCCTAAAACTATTGCT  699

seq1  AAAAGTTTTAAATTTGGTAGGCAGGAGATTATTTATTTGTTTGGTTTTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTAAATTTGGTAGGCAGGAGATTATTTATTTGTTTGGTTTTGG  749

seq1  ATTTTAGATTACTTATACACCGGTAAGCTATGTTAGGAATGAGACACACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGATTACTTATACACCGGTAAGCTATGTTAGGAATGAGACACACG  799

seq1  TCTATACATAAAATGCATCTGTTTATTATATCTATGTACACATGGTCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACATAAAATGCATCTGTTTATTATATCTATGTACACATGGTCTGA  849

seq1  AGATAATTTTATAAAACACTTTTAGTAATAACTTTCACAGGGTAGGAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTTATAAAACACTTTTAGTAATAACTTTCACAGGGTAGGAATG  899

seq1  AATGTCTACTTATTACAGTATTAAGTTACCATTCAAAAACACTCAGATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTACTTATTACAGTATTAAGTTACCATTCAAAAACACTCAGATTT  949

seq1  GTGAATTC  957
      ||||||||
seq2  GTGAATTC  957


seq1: chr11_11806297_11806949
seq2: B6Ng01-320O12.g_69_726

seq1  GAATTCTCAGCTTCTCCTGTACCATGCCTACCTGGATGCCACCATGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTTCTCCTGTACCATGCCTACCTGGATGCCACCATGCTCC  50

seq1  TGCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGTCCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGTCCTAAT  100

seq1  TAGATGTTGTCTTTTAATAGTTGCCTTGGCCATGGTATCTGTTCACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTTGTCTTTTAATAGTTGCCTTGGCCATGGTATCTGTTCACAGCA  150

seq1  GTAAAAACCTAAGACAAGGTCTTTGATCCACTTCAACTTGAGTTTTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAACCTAAGACAAGGTCTTTGATCCACTTCAACTTGAGTTTTGTAC  200

seq1  AGGGTGATAAATATGGATCTATTTATGTTCTTCTACATGCAGACCAGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGATAAATATGGATCTATTTATGTTCTTCTACATGCAGACCAGAAC  250

seq1  CATTTGTTGAAGATGCTTTCTTTTTTTCTATTGGGAAATGAGAAGGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTGAAGATGCTTTCTTTTTTTCTATTGGGAAATGAGAAGGAGAG  300

seq1  GGAGAGGGAGGAGTTGGGGTAGCTGACCAGTTTGTGTTTTTTTGTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGAGGAGTTGGGGTAGCTGACCAGTTTGTGTTTTTTTGTTTGTT  350

seq1  TGTTTGTTTGTTTGTTTGTTTTGGTTTTTCGAGACAGGGTTTCTCTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGTTTTGGTTTTTCGAGACAGGGTTTCTCTGTAT  400

seq1  AGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGCCCTCAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGCCCTCAAACT  450

seq1  CAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCA  500

seq1  CCACCACACCCGGCTGAGCAG-TTTTTCTTATATGCCAGGTTGGCTTGCA  549
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  CCACCACACCCGGCTGAGCAGTTTTTTCTTATATGCCATGTTGGCTTGCA  550

seq1  CCTGGCAGGCAGAGGAGCAAGCTGTTGCTTGGTAGCTGTTGGGTGGAGCC  599
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  CCTGGCAGGCAGAGGAGCAAGCTGTGCTTTGGTAGCTGTTGGGTGGAGCC  600

seq1  TAGTAGAATTG-CCAACAAGCACT--CTTCTGCCCTTGCAGTTTGCATC-  645
      ||||||||||| ||||||||||||   ||||||||||||| |||||||| 
seq2  TAGTAGAATTGCCCAACAAGCACTTCTTTCTGCCCTTGCATTTTGCATCT  650

seq1  CATCTTCT  653
      ||||||||
seq2  CATCTTCT  658


| Home | SequenceCutter | Blast | Download |