BAC Information

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BAC

Clone NameB6Ng01-321A14
Chromosome11 (Build37)
Map Location 64,397,736 - 64,504,618
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785, Hs3st3a1
Downstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd, Map2k4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321A14.bB6Ng01-321A14.g
ACCGA110254GA110255
length1,2021,129
definitionB6Ng01-321A14.b B6Ng01-321A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,503,416 - 64,504,618)(64,397,736 - 64,398,664)
sequence
gaattcatcttcatagatacaaaatgttatgaatgataagattcaccagg
acttcctacaggaataatttttactattttcctatccccccccccatgcc
ccagaggcttaactacccaggctcacattatgttctctgggttacaaatg
aatgcaattttcgaaaagtcaacagagacttgagctgtaaacctgcattt
gtttcagctaagctccttcacatacctcaggatctgggtaaagggatgtc
tttccacagttctttccaattctaatgagctctgaagaagtttatttcaa
aataatccttctgtattaagcgctggctcattgacaggtctgcttttatc
ataattgtaggaaggttattttcccaatgaaggtttgttttttcatggaa
ttccgaggttttgcattgtgtatatgaggcaattagtttgggatttttgg
aatttattttagacctgacagatgtcttcaatttacacactctaggaggt
gacaaaccccattaacatttgaaagctatcaatttagtttatctttcttc
ccagtctccaagttatgagccaagagaccctgtcttttgtttgttccctg
tttgctcgctctcactctctctttttctccctcccttctttcttatccct
ctctcttctctatttttatgtgtacaaaaaggaaatttgtctcagtcaga
atctagttggttatgaattatatttgatgaggtatgatttttttttctga
ctaaaatatgttcccttttgcagtccgcagttgtgactactgtcttacag
ttttgttcttccaccttctcctctgttggttaattaactctgggtcctgc
tctctttcttggtcttgtatagttaagagtcactgagatgtgtagacttc
agcatgaacttgggtgcccttccatttttcagtcaaatcctttacagcgg
gcagctgcttcctcagttggagtgaagttctccacatgccagtttgggat
gggaattcaattgttctcatttgggttttcacatgaagactcacaggtgt
ttgcttgcttgtcactggaacattctgcagctactagatgactcagcgga
ggtggtgctgaataactctccaggtgtaactccaaggtctacctctgtca
acttggctcgattccatctcggaagtaaaggtctgcatcaagatttctct
ga
gaattcaatgggcttcaaagacacgtatcagcagaacccaagtgatgaat
tgttctaaagtctgcataggaaaacaaaggacctgaggtaaccggaacac
tttctacaagaactggaaggactaacagtgtttaattctaagatttcgat
catcattaatacagaattgtaaaagagacagacaatcgaggtagaagact
tcacagcacagagaatcaagaagctgttcaaaatgtatgctaacaactat
tttttgatgttggtatagcataattttttgtaagaatgatagtattttca
aacagacttgatataaaaaaaggaatgaacatgaattccagaccatacca
tgcaccagatagagaaattagataaaaatggatcatatgatctcatgtaa
aagcaaaattacaaaatttctaaaatgatacagagggcaatttttgatat
ttgtttatgttatgtttattgacattttgacatcataaagtaaaattatg
aactaggaaaggacaaatgagatgtacctcacagaaactggatggccttc
cttccattaaaagagaatacagagcttctctagagacttgcagaatatat
ttggaaagcccataacacttaataaagctttgcattcagaacatacgagt
ggcccttaaaacttgatagtaggaaagaaaacaacttcaggagaaaatag
acatcagatgaagggaagcaacagtacacatgaaaagccgttcaaatagt
taattagcaatagttaattacctgcagcacccaataagataaacaactgg
tagatgactgaaagtaaagaggttacactcaagtgctgagagctatatcc
aggaactaaactggttccacactgctgctaatggaacaccatgaacatgt
tgataaccagtttggagtcttttctgaagtcaacatcatgtttttttgct
tgtttttttgttttttgtatttttttaaagaaataatgtgggggagttga
gaactgttgacacattgacaataggagaacagcttaatgtcattaagcat
tttttatagtaaacatacatctaacaaggccctgaatcgagaaggctaga
cagaagaaatacattctgatgatccctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_64503416_64504618
seq2: B6Ng01-321A14.b_49_1250 (reverse)

seq1  TCAG-GAAATCTTGATGCAGACCTCTACTTCAG-TATGAGAATCGAAGCA  48
      |||| ||||||||||||||||||| |||||| |  ||| |||||| ||| 
seq2  TCAGAGAAATCTTGATGCAGACCTTTACTTCCGAGATG-GAATCG-AGCC  48

seq1  CAGTTTACAGA-GTAGACTTTGAAGTAACAACTGGAGAGTTA-TCAGCA-  95
       |||| ||||| |||||| ||| ||| ||| ||||||||||| |||||| 
seq2  AAGTTGACAGAGGTAGACCTTGGAGTTACACCTGGAGAGTTATTCAGCAC  98

seq1  CACCTCCGCTGAGTCATCTAGTAGCTGCAGAATGTTCCCAGTGGACAAGC  145
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  CACCTCCGCTGAGTCATCTAGTAGCTGCAGAATGTT-CCAGT-GACAAGC  146

seq1  AAGCAAACACCTGTGAGGTCTTCCATGTGAAAA-CCAAATGAGAACAATT  194
      |||||||||||||||| ||||| |||||||||| |||||||||||||| |
seq2  AAGCAAACACCTGTGA-GTCTT-CATGTGAAAACCCAAATGAGAACAA-T  193

seq1  TGAATTCCCATCCCAAACTGGCATGTGGAGAACTTCACTCCAACTGAGGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCCCATCCCAAACTGGCATGTGGAGAACTTCACTCCAACTGAGGA  243

seq1  AGCAGCTGCCCGCTGTAAAGGATTTGACTGAAAAATGGAAGGGCACCCAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGCCCGCTGTAAAGGATTTGACTGAAAAATGGAAGGGCACCCAA  293

seq1  GTTCATGCTGAAGTCTACACATCTCAGTGACTCTTAACTATACAAGACCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGCTGAAGTCTACACATCTCAGTGACTCTTAACTATACAAGACCA  343

seq1  AGAAAGAGAGCAGGACCCAGAGTTAATTAACCAACAGAGGAGAAGGTGGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGCAGGACCCAGAGTTAATTAACCAACAGAGGAGAAGGTGGA  393

seq1  AGAACAAAACTGTAAGACAGTAGTCACAACTGCGGACTGCAAAAGGGAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAACTGTAAGACAGTAGTCACAACTGCGGACTGCAAAAGGGAAC  443

seq1  ATATTTTAGTCAGAAAAAAAAATCATACCTCATCAAATATAATTCATAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGTCAGAAAAAAAAATCATACCTCATCAAATATAATTCATAAC  493

seq1  CAACTAGATTCTGACTGAGACAAATTTCCTTTTTGTACACATAAAAATAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGATTCTGACTGAGACAAATTTCCTTTTTGTACACATAAAAATAG  543

seq1  AGAAGAGAGAGGGATAAGAAAGAAGGGAGGGAGAAAAAGAGAGAGTGAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGAGGGATAAGAAAGAAGGGAGGGAGAAAAAGAGAGAGTGAGA  593

seq1  GCGAGCAAACAGGGAACAAACAAAAGACAGGGTCTCTTGGCTCATAACTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCAAACAGGGAACAAACAAAAGACAGGGTCTCTTGGCTCATAACTT  643

seq1  GGAGACTGGGAAGAAAGATAAACTAAATTGATAGCTTTCAAATGTTAATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTGGGAAGAAAGATAAACTAAATTGATAGCTTTCAAATGTTAATG  693

seq1  GGGTTTGTCACCTCCTAGAGTGTGTAAATTGAAGACATCTGTCAGGTCTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGTCACCTCCTAGAGTGTGTAAATTGAAGACATCTGTCAGGTCTA  743

seq1  AAATAAATTCCAAAAATCCCAAACTAATTGCCTCATATACACAATGCAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTCCAAAAATCCCAAACTAATTGCCTCATATACACAATGCAAA  793

seq1  ACCTCGGAATTCCATGAAAAAACAAACCTTCATTGGGAAAATAACCTTCC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGGAATTCCATGAAAAAACAAACCTTCATTGGGAAAATAACCTTCC  843

seq1  TACAATTATGATAAAAGCAGACCTGTCAATGAGCCAGCGCTTAATACAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATGATAAAAGCAGACCTGTCAATGAGCCAGCGCTTAATACAGA  893

seq1  AGGATTATTTTGAAATAAACTTCTTCAGAGCTCATTAGAATTGGAAAGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATTTTGAAATAAACTTCTTCAGAGCTCATTAGAATTGGAAAGAA  943

seq1  CTGTGGAAAGACATCCCTTTACCCAGATCCTGAGGTATGTGAAGGAGCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAAGACATCCCTTTACCCAGATCCTGAGGTATGTGAAGGAGCTT  993

seq1  AGCTGAAACAAATGCAGGTTTACAGCTCAAGTCTCTGTTGACTTTTCGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAACAAATGCAGGTTTACAGCTCAAGTCTCTGTTGACTTTTCGAA  1043

seq1  AATTGCATTCATTTGTAACCCAGAGAACATAATGTGAGCCTGGGTAGTTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATTCATTTGTAACCCAGAGAACATAATGTGAGCCTGGGTAGTTA  1093

seq1  AGCCTCTGGGGCATGGGGGGGGGGATAGGAAAATAGTAAAAATTATTCCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGGGGCATGGGGGGGGGGATAGGAAAATAGTAAAAATTATTCCT  1143

seq1  GTAGGAAGTCCTGGTGAATCTTATCATTCATAACATTTTGTATCTATGAA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAGTCCTGGTGAATCTTATCATTCATAACATTTTGTATCTATGAA  1193

seq1  GATGAATTC  1203
      |||||||||
seq2  GATGAATTC  1202

seq1: chr11_64397736_64398664
seq2: B6Ng01-321A14.g_272_1196

seq1  AGCACAGAGAATCAAGAAGCTGTTCAAAATGTATGCTAACAACTATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAGAATCAAGAAGCTGTTCAAAATGTATGCTAACAACTATTTTT  50

seq1  TGATGTTGGTATAGCATAATTTTTTGTAAGAATGATAGTATTTTCAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGGTATAGCATAATTTTTTGTAAGAATGATAGTATTTTCAAACA  100

seq1  GACTTGATATAAAAAAAGGAATGAACATGAATTCCAGACCATACCATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGATATAAAAAAAGGAATGAACATGAATTCCAGACCATACCATGCA  150

seq1  CCAGATAGAGAAATTAGATAAAAATGGATCATATGATCTCATGTAAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAGAGAAATTAGATAAAAATGGATCATATGATCTCATGTAAAAGC  200

seq1  AAAATTACAAAATTTCTAAAATGATACAGAGGGCAATTTTTGATATTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACAAAATTTCTAAAATGATACAGAGGGCAATTTTTGATATTTGT  250

seq1  TTATGTTATGTTTATTGACATTTTGACATCATAAAGTAAAATTATGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTATGTTTATTGACATTTTGACATCATAAAGTAAAATTATGAACT  300

seq1  AGGAAAGGACAAATGAGATGTACCTCACAGAAACTGGATGGCCTTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGACAAATGAGATGTACCTCACAGAAACTGGATGGCCTTCCTTC  350

seq1  CATTAAAAGAGAATACAGAGCTTCTCTAGAGACTTGCAGAATATATTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAGAGAATACAGAGCTTCTCTAGAGACTTGCAGAATATATTTGG  400

seq1  AAAGCCCATAACACTTAATAAAGCTTTGCATTCAGAACATACGAGTGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCATAACACTTAATAAAGCTTTGCATTCAGAACATACGAGTGGCC  450

seq1  CTTAAAACTTGATAGTAGGAAAGAAAACAACTTCAGGAGAAAATAGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACTTGATAGTAGGAAAGAAAACAACTTCAGGAGAAAATAGACAT  500

seq1  CAGATGAAGGGAAGCAACAGTACACATGAAAAGCCGTTCAAATAGTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAGGGAAGCAACAGTACACATGAAAAGCCGTTCAAATAGTTAAT  550

seq1  TAGCAATAGTTAATTACCTGCAGCACCCAATAAGATAAACAACTGGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATAGTTAATTACCTGCAGCACCCAATAAGATAAACAACTGGTAGA  600

seq1  TGACTGAAAGTAAAGAGGTTACACTCAAGTGCTGAGAGCTATATCCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAAGTAAAGAGGTTACACTCAAGTGCTGAGAGCTATATCCAGGA  650

seq1  ACTAAACTGGTTCCACACTGCTGCTAATGGAACACCATGAACATGTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACTGGTTCCACACTGCTGCTAATGGAACACCATGAACATGTTGAT  700

seq1  AACCAGTTTGGAGTCTTTTCTGAAGTCAACATCATGTTTTTTTGCTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTTTGGAGTCTTTTCTGAAGTCAACATCATGTTTTTTTGCTTGTT  750

seq1  TTTTTGTTTTTTGTATTTTTTTTAAAGAAATAATGT-GGGGAGTTGAGAA  799
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  TTTTTGTTTTTTGTA-TTTTTTTAAAGAAATAATGTGGGGGAGTTGAGAA  799

seq1  CTGTTGACAACATTGACAATAGGAGGAACAGCTTAAATGTCAATTAAGCA  849
      |||||||| ||||||||||||||| ||||||||| |||||| ||||||||
seq2  CTGTTGAC-ACATTGACAATAGGA-GAACAGCTT-AATGTC-ATTAAGCA  845

seq1  -TTTTTATAGGTAAACATACATCTAACAAGGCCCTGAATCGAG-AGGCTA  897
       |||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTTTATA-GTAAACATACATCTAACAAGGCCCTGAATCGAGAAGGCTA  894

seq1  GACAG-AGAAATACATTCTGAATGATTCCCTAA  929
      ||||| |||||||||||||| |||| |||||||
seq2  GACAGAAGAAATACATTCTG-ATGA-TCCCTAA  925