BAC Information

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BAC

Clone NameB6Ng01-321A17
Chromosome11 (Build37)
Map Location 106,802,650 - 106,803,690
singlet/doubletsinglet
Overlap genenone
Upstream geneCyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2
Downstream geneLOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321A17.bB6Ng01-321A17.g
ACCGA110260GA110261
length1,0531,220
definitionB6Ng01-321A17.b B6Ng01-321A17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttggttgaaaggacgatttcttttcttttttttttaagattta
tttatttattttgtgtatgtgagtacactgcagctgtagagatggttgtg
agccttcatgtggttgttgggatttgaattttaggacctctgctcactct
ggtcggactcggtagctccgacccaaagattagtttattattataagtaa
gtacactgtagctgtcttcagacacaccagaagagggtgtcagatctcat
tacggatggttgtgagccaccatgtggttgctgggatttgaactcaggac
ctttggaagagtagtcagtgctcttaaccactgagtcatctcgccagccc
ccaaaagggcaatttttaatatgccatttctatgatgacattagagctaa
ataatctctaacatatttaatttacagactgtcacggggctattaaaaat
atcatacaggtgaactactaagaattagaattgtccaacagaggcaggta
gatctctgagtctgagagcagcctgctctagagagtgagttccaggacag
ccagggctacacagagaaaccctggtttgcattaacaggttgcccacata
ctcagttggcctgagtctgctacataaatcctgagttcaaatccccagca
cccctgtaaagtgccagatacaatagcacacagctgtaacagttggggtg
ttttgaggatgcagggggttccttgagctcacgggccaaccattatagcc
aatctgtgtgctcccaggttccaaaagataagggtccagcaattaaaggg
tgatacttgatctggacctccgatctctatatacatgtgcatacaactgt
acacaccttactcaaccattacaaatagtgcacacacacacacacacaac
acacacacacaaccttccctgtgctctctagcgagccaaggaaacctctc
ctttcctgccctcacaccatggctaactgagaaagcaagaatccaaaggg
tccagaaattcttctgccttggataagaagccatggaatatcatgagtta
aca
gaattctgggttgcttatattttcttaattagttaatgatgggtgtttag
gaaacgaatacacagggaaccagctggcccacctgcccaccagagagaca
gattggtgtctttttttttttttttaacgatttatttatttttatgtata
tgaatacagtgtcactgtcttcagacacaccagaagagggcatcagatcc
tattacctatggttgtgagccaccatgtggttgctgggaattgaactcag
gacctctcgaagagcagtcggtgttcttaaccactgagccatcatctctc
cagcccagattggtgttttctgataccgtcagggcaccttgccttatttg
ttctttcgtttttataatttttagatttattttctttcatatctatggat
gtattagtgctttgcttgcatgtttatgtgtcattagcattcttggtgcc
tgaagagaacagcagatccctggactggagttactgttggttgtgggcca
ccatgtaggtctgtgactcaaacttgagagctctgcaaaaggacaagtga
gttatggtttctttggaaagtcagtcttgacgctggggcagacgtgtgaa
ggaatattttcttgaggcggattcaggtgaagggatgtcttgctaaagca
agcatgtgaaagtgcacgtgatgaagaagtttttgccaacgacctgcttg
tattggttcttcttgcattgcgctgttgagctccatttgtcatgactcca
tagagaggaaatacaccaaaaaccttctggtgctctgctgggggcttctt
gctgtttctgtggactcgggacagttggcacagtgatgtcagctgatatc
agactctcgtgctcagggcaagaccggtgaacggacagtgtatgggatac
ttgatagctagctagctttgcacacttttggtctgaatcttccctggtct
cactatcttcacttgattgagagaggtgcagcaagcacttctggtgttcc
tggtcttctctgctgactcctgctgagtctgctgaggccttgttcttgtt
ctgtagctcaggtcgggcaatgctgcctggtttatgttgctgttgctgac
actacctgaactgaactgcgtggtgattgtggaagtatttgccagggatc
accgttgcgtctgatcgtgaacctgaacgttgaatacccctacaagtgca
atagtgggtgttgctcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106802650_106803690
seq2: B6Ng01-321A17.b_44_1096

seq1  GAATTCTTTGGTTGAAAGGACGATTTCTTTTCTTTTTTTTTTAAGATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGTTGAAAGGACGATTTCTTTTCTTTTTTTTTTAAGATTTA  50

seq1  TTTATTTATTTTGTGTATGTGAGTACACTGCAGCTGTAGAGATGGTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTTGTGTATGTGAGTACACTGCAGCTGTAGAGATGGTTGTG  100

seq1  AGCCTTCATGTGGTTGTTGGGATTTGAATTTTAGGACCTCTGCTCACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCATGTGGTTGTTGGGATTTGAATTTTAGGACCTCTGCTCACTCT  150

seq1  GGTCGGACTCGGTAGCTCCGACCCAAAGATTAGTTTATTATTATAAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGACTCGGTAGCTCCGACCCAAAGATTAGTTTATTATTATAAGTAA  200

seq1  GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGTGTCAGATCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGTGTCAGATCTCAT  250

seq1  TACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGAC  300

seq1  CTTTGGAAGAGTAGTCAGTGCTCTTAACCACTGAGTCATCTCGCCAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAGAGTAGTCAGTGCTCTTAACCACTGAGTCATCTCGCCAGCCC  350

seq1  CCAAAAGGGCAATTTTTAATATGCCATTTCTATGATGACATTAGAGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGGCAATTTTTAATATGCCATTTCTATGATGACATTAGAGCTAA  400

seq1  ATAATCTCTAACATATTTAATTTACAGACTGTCACGGGGCTATTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTCTAACATATTTAATTTACAGACTGTCACGGGGCTATTAAAAAT  450

seq1  ATCATACAGGTGAACTACTAAGAATTAGAATTGTCCAACAGAGGCAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACAGGTGAACTACTAAGAATTAGAATTGTCCAACAGAGGCAGGTA  500

seq1  GATCTCTGAGTCTGAGAGCAGCCTGCTCTAGAGAGTGAGTTCCAGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGAGTCTGAGAGCAGCCTGCTCTAGAGAGTGAGTTCCAGGACAG  550

seq1  CCAGGGCTACACAGAGAAACCCTGGTTTGCATTAACAGGTTGCCCACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTACACAGAGAAACCCTGGTTTGCATTAACAGGTTGCCCACATA  600

seq1  CTCAGTTGGCCTGAGTCTGCTACATAAATCCTGAGTTCAAATCCCCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGGCCTGAGTCTGCTACATAAATCCTGAGTTCAAATCCCCAGCA  650

seq1  CCCCTGTAAAGTGCCAGATACAATAGCACACAGCTGTAACAGTTGGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTAAAGTGCCAGATACAATAGCACACAGCTGTAACAGTTGGGGTG  700

seq1  TTTTGAGGATGCAGGGGGTTCCTTGAGCTCACGGGCCAACCATTATAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGATGCAGGGGGTTCCTTGAGCTCACGGGCCAACCATTATAGCC  750

seq1  AATCTGTGTGCTCCCAGGTTCCAAAAGATAA-GGTCCAGCAATT-AAGGG  798
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  AATCTGTGTGCTCCCAGGTTCCAAAAGATAAGGGTCCAGCAATTAAAGGG  800

seq1  TGATACTTGATCTGGACCTCCGATCTCTATATACATGTGCATACAACTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTTGATCTGGACCTCCGATCTCTATATACATGTGCATACAACTGT  850

seq1  ACACACC-TACTCAAACCATTACAAATAGCGCACACACACACACACAC-A  896
      ||||||| ||||| ||||||||||||||| |||||||||||||||||| |
seq2  ACACACCTTACTC-AACCATTACAAATAGTGCACACACACACACACACAA  899

seq1  CACACACACACAACC-TCCCTGTGCTCTCTAGCGAGTCAAGGAAACC-CT  944
      ||||||||||||||| |||||||||||||||||||| |||||||||| ||
seq2  CACACACACACAACCTTCCCTGTGCTCTCTAGCGAGCCAAGGAAACCTCT  949

seq1  CC-TTCCTGCCC-CACACCATGGCAAACTGAGAGAGCAAG-ATCCACAGG  991
      || ||||||||| ||||||||||| |||||||| |||||| ||||| |||
seq2  CCTTTCCTGCCCTCACACCATGGCTAACTGAGAAAGCAAGAATCCAAAGG  999

seq1  GTCCAGAAAATCTTCTG-CTTGGAT-AGAAGCGA-GGAAGA-CATGAGTT  1037
      ||||||||| ||||||| ||||||| |||||| | |||| | ||||||||
seq2  GTCCAGAAATTCTTCTGCCTTGGATAAGAAGCCATGGAATATCATGAGTT  1049

seq1  AACA  1041
      ||||
seq2  AACA  1053