BAC Information

Click to search

BAC

Clone NameB6Ng01-321O23
Chromosome11 (Build37)
Map Location 63,381,297 - 63,546,246
singlet/doubletdoublet
Overlap genenone
Upstream geneTrpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
Downstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785, Hs3st3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321O23.bB6Ng01-321O23.g
ACCGA110912GA110913
length1,0811,111
definitionB6Ng01-321O23.b B6Ng01-321O23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,381,297 - 63,382,374)(63,545,138 - 63,546,246)
sequence
gaattcaaatcttgggcagataattgatccaaggtcacccaggaactgag
tgacttggaacagtaaccccccttagaatgacttagttccttcattggtg
aaatggtttgacaggacaacaatataatctctgttactacaagtgaagga
gtcaaaacagagtaactcactcactaattactggctattacaagtactta
tcatggatcttattacactatagaacatccctaaagaggacttatggtgt
ggttgcaaaatcactgaattatacatttataatattaaatagatctcaat
acaacaatttttaaaagaatcaatactggttggtgatatggcttaatgaa
tgggtaaaggctcttgctgtaaagtgtgacaacctgaatttgatccccag
aattcacctgataaaaggagagccaattccagtagattttctttgatctc
cacattgtaagacatggcatgtgtaccctcataactaaaagcattaattt
aattattaaagttattagatatcatcattacttattaacaacatcaatag
actgactttatgtgtttatttcttaatatctttatctgagacctttaggc
ccttgattattattttcttccttagagagggaccacagacctgaaacctg
tggtgtagcataaccctccacctcctagtccagcctgtttctgtcttgct
aaccagtcagtggaccttgttttacttttgactactctgtctgtgttcaa
gacatcttggtgaaagatatttgatctcactgtgaaccccgagattatat
aatttacagaaaaaaaaacctgtttctagttatagcggggatcaccctta
gcacacaccttatttcgtctggctggaatacagacgtcctttagcacaca
cctttaatcccaaacagtgaaggtaaagttagtttgtagaaggaagcacc
cgtgtttgaaagtgatgtttaattgagtgcaagtgatgaatcagaaaatt
tcgacaagaataggagatgcacactctcacgagagagagagaaaagggaa
gctactgagggagcggtgttaaagaagagag
gaattcattgaatccttttatccattcagttattgatgaaaattgatccg
tcggggtttttttttttttttttttttttttgatataaaatcttccttca
tttccagtttttgctgtgttgaatttgcaacagtttgagtattattctag
gccaatggtttccaaccttaagcatactccagaatctcctagaaggctca
caaagtacaaattgctggtccttttctccagtgtttctgattcaacagcc
cccactggggttctggtctggccagatccaacaggatcataggggctgtt
gctgcttttgctagcacaagctcttacttggagaaatgctgccagaactc
ctttcaaagagctgctagctacagaccaagcagcaggtccctgccacatg
ctctcctatggggacaagccatttacagtcttcagccaggtgttgcccta
aagcaggtccatgtaatagctggctactgacccccaaaggtgagccaggc
caccccctcaagaacttgaaagagtgacctggaggtaagagggacggacg
attgactaggcagggttggagctgtgatgtcaactgtagacttagggcct
gaaaacaaagaagtcagtgatgggagaaaaagagtgggcttgtgtccaga
aggggacaccatcattcccccacttttgtaagactccccaaaactttctg
cttccttcctgccctactgagtccatcctgctgtcagaaagaattggccc
ctgggcttgaatttcagtgaagccatgaagagaaaatgcaccatgaaatt
atatggctcctgcaaagagacggccatctgcttcttctttggggctcccc
cccccccatgcagtattaaagcatccctggttctggggctgatttcactt
tcctggtaatatggtctgcattaacaaggtctcatttaaataaagcacaa
tgcaagggtttagggtgctagtgaggttccctcagcatggtggcgggttc
tctacatttctaacattaggtatttaattatttgtcagatttcccctagt
cctcggtgcatgttgaatgaagtgagagcccctgcttcatctcttgcttg
actcttgtgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_63381297_63382374
seq2: B6Ng01-321O23.b_49_1129

seq1  GAATTCAAATCTTGGGCAGATAATTGATCCAAGGTCACCCAGGAACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTTGGGCAGATAATTGATCCAAGGTCACCCAGGAACTGAG  50

seq1  TGACTTGGAACAGTAACCCCCCTTAGAATGACTTAGTTCCTTCATTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGAACAGTAACCCCCCTTAGAATGACTTAGTTCCTTCATTGGTG  100

seq1  AAATGGTTTGACAGGACAACAATATAATCTCTGTTACTACAAGTGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTTGACAGGACAACAATATAATCTCTGTTACTACAAGTGAAGGA  150

seq1  GTCAAAACAGAGTAACTCACTCACTAATTACTGGCTATTACAAGTACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAACAGAGTAACTCACTCACTAATTACTGGCTATTACAAGTACTTA  200

seq1  TCATGGATCTTATTACACTATAGAACATCCCTAAAGAGGACTTATGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATCTTATTACACTATAGAACATCCCTAAAGAGGACTTATGGTGT  250

seq1  GGTTGCAAAATCACTGAATTATACATTTATAATATTAAATAGATCTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAAAATCACTGAATTATACATTTATAATATTAAATAGATCTCAAT  300

seq1  ACAACAATTTTTAAAAGAATCAATACTGGTTGGTGATATGGCTTAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATTTTTAAAAGAATCAATACTGGTTGGTGATATGGCTTAATGAA  350

seq1  TGGGTAAAGGCTCTTGCTGTAAAGTGTGACAACCTGAATTTGATCCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGGCTCTTGCTGTAAAGTGTGACAACCTGAATTTGATCCCCAG  400

seq1  AATTCACCTGATAAAAGGAGAGCCAATTCCAGTAGATTTTCTTTGATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACCTGATAAAAGGAGAGCCAATTCCAGTAGATTTTCTTTGATCTC  450

seq1  CACATTGTAAGACATGGCATGTGTACCCTCATAACTAAAAGCATTAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTAAGACATGGCATGTGTACCCTCATAACTAAAAGCATTAATTT  500

seq1  AATTATTAAAGTTATTAGATATCATCATTACTTATTAACAACATCAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTAAAGTTATTAGATATCATCATTACTTATTAACAACATCAATAG  550

seq1  ACTGACTTTATGTGTTTATTTCTTAATATCTTTATCTGAGACCTTTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTTATGTGTTTATTTCTTAATATCTTTATCTGAGACCTTTAGGC  600

seq1  CCTTGATTATTATTTTCTTCCTTAGAGAGGGACCACAGACCTGAAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTATTATTTTCTTCCTTAGAGAGGGACCACAGACCTGAAACCTG  650

seq1  TGGTGTAGCATAACCCTCCACCTCCTAGTCCAGCCTGTTTCTGTCTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGCATAACCCTCCACCTCCTAGTCCAGCCTGTTTCTGTCTTGCT  700

seq1  AACCAGTCAGTGGACCTTGTTTTACTTTTGACTACTCTGTCTGTGTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTCAGTGGACCTTGTTTTACTTTTGACTACTCTGTCTGTGTTCAA  750

seq1  GACATCTTGGTGAAAGATATTTGATCTCACTGTGAACCCCGAGATTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTGGTGAAAGATATTTGATCTCACTGTGAACCCCGAGATTATAT  800

seq1  AATTTACAG-AAAAAAAACCTGTTTCTAGTTATAGCGGGGATCACCCTTA  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACAGAAAAAAAAACCTGTTTCTAGTTATAGCGGGGATCACCCTTA  850

seq1  GCACACACCTTATTTCGTCTGGCTGGAATACAGACGTCCTTTAGCACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACCTTATTTCGTCTGGCTGGAATACAGACGTCCTTTAGCACACA  900

seq1  CCTTTAATCCCAAACAGTGAAGGTAAAGTTAGTTTGTAGAAGGAAGCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCCCAAACAGTGAAGGTAAAGTTAGTTTGTAGAAGGAAGCACC  950

seq1  CGTGTTTGAAAGTGATGTTTAATTGAGTGGCAAAGTGATGAATCAGAAAA  999
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  CGTGTTTGAAAGTGATGTTTAATTGAGTG--CAAGTGATGAATCAGAAAA  998

seq1  ATTCGAC-AGAATAGGAGATGCACAACTCTCACGAGAAGAGAGAGGAAAG  1048
       |||||| |||||||||||||||| ||||||||||| |||||||| ||||
seq2  TTTCGACAAGAATAGGAGATGCAC-ACTCTCACGAG-AGAGAGAGAAAAG  1046

seq1  GGAAGCTACTTGAGGGAGCGGTGT------AGAGAG  1078
      ||||||||| ||||||||||||||      ||||||
seq2  GGAAGCTAC-TGAGGGAGCGGTGTTAAAGAAGAGAG  1081

seq1: chr11_63545138_63546246
seq2: B6Ng01-321O23.g_66_1176 (reverse)

seq1  TACAC-AGAG-CAAGCAAGAGCTGAAGCAGGGGGCTCTTCACTTCTATCC  48
      ||||| |||| |||||||||| ||||||| ||||||| ||||||| || |
seq2  TACACAAGAGTCAAGCAAGAGATGAAGCA-GGGGCTC-TCACTTC-ATTC  47

seq1  AACATGGCACGAGGGGACTTAGGGGGAAATCTGACAAATTATT-AATA-C  96
      ||||||   |||  |||||   ||||||||||||||||| ||| |||| |
seq2  AACATGCACCGA--GGACT--AGGGGAAATCTGACAAATAATTAAATACC  93

seq1  TAATGTTAGAAAATGGTAGAGAACCCGC--ACATGCCTGAGGG-ACCTCA  143
      ||||||||||||   |||||||||||||   |||| ||||||| ||||||
seq2  TAATGTTAGAAA--TGTAGAGAACCCGCCACCATG-CTGAGGGAACCTCA  140

seq1  CTAGCA-CCTAAAACCCTGCATTGTGCTTTATTTAAATGAGGACTTGTTA  192
      |||||| |||||| || ||||||||||||||||||||||||  |||||||
seq2  CTAGCACCCTAAACCCTTGCATTGTGCTTTATTTAAATGAGACCTTGTTA  190

seq1  ATGCAGACAATATTACCAGG-AAGTGGAATCAGCCCCAGAA-CAGGGATG  240
      |||||||| ||||||||||| ||||| |||||||||||||| ||||||||
seq2  ATGCAGACCATATTACCAGGAAAGTGAAATCAGCCCCAGAACCAGGGATG  240

seq1  CTTTAATACTGCATGGGGGGGGGGGAG-CCCAAAGAAGAAGCAGATGGCC  289
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTAATACTGCATGGGGGGGGGGGAGCCCCAAAGAAGAAGCAGATGGCC  290

seq1  GTCTCTTTGCAGGAGCCATATAATTTCATGGTGCATTTTCTCTTCATGGC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTGCAGGAGCCATATAATTTCATGGTGCATTTTCTCTTCATGGC  340

seq1  TTCACTGAAATTCAAGCCCAGGGGCCAATTCTTTCTGACAGCAGGATGGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGAAATTCAAGCCCAGGGGCCAATTCTTTCTGACAGCAGGATGGA  390

seq1  CTCAGTA-GGCAGGAAGGAAGCAGAAAGTTTTGGGGAGTCTTACAAAAGT  438
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAGGGCAGGAAGGAAGCAGAAAGTTTTGGGGAGTCTTACAAAAGT  440

seq1  GGGGGAATGATGGTGTCCCCTTCTGGACACAAGCCCACTCTTTTTCTCCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAATGATGGTGTCCCCTTCTGGACACAAGCCCACTCTTTTTCTCCC  490

seq1  ATCACTGACTTCTTTGTTTTCAGGCCCTAAGTCTACAGTTGACATCACAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGACTTCTTTGTTTTCAGGCCCTAAGTCTACAGTTGACATCACAG  540

seq1  CTCCAACCCTGCCTAGTCAATCGTCCGTCCCTCTTACCTCCAGGTCACTC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCCTGCCTAGTCAATCGTCCGTCCCTCTTACCTCCAGGTCACTC  590

seq1  TTTCAAGTTCTTGAGGGGGTGGCCTGGCTCACCTTTGGGGGTCAGTAGCC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTCTTGAGGGGGTGGCCTGGCTCACCTTTGGGGGTCAGTAGCC  640

seq1  AGCTATTACATGGACCTGCTTTAGGGCAACACCTGGCTGAAGACTGTAAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTACATGGACCTGCTTTAGGGCAACACCTGGCTGAAGACTGTAAA  690

seq1  TGGCTTGTCCCCATAGGAGAGCATGTGGCAGGGACCTGCTGCTTGGTCTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTCCCCATAGGAGAGCATGTGGCAGGGACCTGCTGCTTGGTCTG  740

seq1  TAGCTAGCAGCTCTTTGAAAGGAGTTCTGGCAGCATTTCTCCAAGTAAGA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGCAGCTCTTTGAAAGGAGTTCTGGCAGCATTTCTCCAAGTAAGA  790

seq1  GCTTGTGCTAGCAAAAGCAGCAACAGCCCCTATGATCCTGTTGGATCTGG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGCTAGCAAAAGCAGCAACAGCCCCTATGATCCTGTTGGATCTGG  840

seq1  CCAGACCAGAACCCCAGTGGGGGCTGTTGAATCAGAAACACTGGAGAAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCAGAACCCCAGTGGGGGCTGTTGAATCAGAAACACTGGAGAAAA  890

seq1  GGACCAGCAATTTGTACTTTGTGAGCCTTCTAGGAGATTCTGGAGTATGC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGCAATTTGTACTTTGTGAGCCTTCTAGGAGATTCTGGAGTATGC  940

seq1  TTAAGGTTGGAAACCATTGGCCTAGAATAATACTCAAACTGTTGCAAATT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTTGGAAACCATTGGCCTAGAATAATACTCAAACTGTTGCAAATT  990

seq1  CAACACAGCAAAAACTGGAAATGAAGGAAGATTTTATATCAAAAAAAAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAGCAAAAACTGGAAATGAAGGAAGATTTTATATCAAAAAAAAAA  1040

seq1  AAAAAAAAAAAAAAACCCCGACGGATCAATTTTCATCAATAACTGAATGG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAACCCCGACGGATCAATTTTCATCAATAACTGAATGG  1090

seq1  ATAAAAGGATTCAATGAATTC  1109
      |||||||||||||||||||||
seq2  ATAAAAGGATTCAATGAATTC  1111