BAC Information

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BAC

Clone NameB6Ng01-322C14
Chromosome11 (Build37)
Map Location 85,130,823 - 85,304,307
singlet/doubletdoublet
Overlap genePpm1d, Bcas3
Upstream geneAcaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik
Downstream geneTbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322C14.bB6Ng01-322C14.g
ACCGA111076GA111077
length1,2131,124
definitionB6Ng01-322C14.b B6Ng01-322C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,130,823 - 85,132,031)(85,303,179 - 85,304,307)
sequence
gaattcaggacctcttctcattccatttggccccattggaccctgctcac
tctgttctaaagatttattatatctaagtacactgtagctgtttccagac
gcaccagaagaaggtgtcagatctcattacagatggttgtgagccaccat
gtggttgctgggatttgaactcaggactttggaagagcagtcagtgttct
taaccactgagccatctctctagccccacacctgactttttttgtttgtt
tgtttttttctttctttttttttattaatttacttaaatctttttttaat
taggtattttcctcatttacatttccaatgctatcccaaaagtcctccat
accctcccccccacccccgtacccacccactcctactttttggccctggt
gttcccctgtactgggggatataaagtttgcaagtccaatgggcctctct
ttccagtgatggccaactaggccatcttttgatacatatgcagctagagt
caagagctccggggtactggttagttcataatgttattccacctatattg
tttgttttttcgagacagggtttcactttgtagaccaggctggcctcgaa
ctcagaaatccgcctgctcctgcctcccaagtgctcggattaaaggcgtg
cgccactactgcctggcgactctttttttttttttaaatgaaaaggtttt
catgtttatgagcactctgtctgcgtaggtcttgcattactttaccaact
gactgtcttcccagtcccttcgttatgaaatatttttttaaagatttatt
tatttatttacttacttattatatgtgtgtacactgtagctgtcttcaga
cactccagaagagggcatcagatttttgttatttgttacggatggttgtg
agccaccatgtggttgctgggatttgaactcaggacttttaggaagaaca
gtcggtgctcttaaccgccgagccatctcctccagccccctggttatgag
attttaataactgttgtttaaccttttctatgctaagtttacaggtatgc
cctaccaagtcttcccctatgcccagccttattaaggtgtagctatgaga
atacagtgtcacctagcttaccttgagcttctgcccatgaacacatgaat
cgatcatgacctctcaagtttacagcattgcttgttccattggcatggtc
tacacacagccca
gaattcatactgcctgctttaggactgagacggtgtgtaagaccttgtca
aagagcacccacacaggagttctgggtctgttcaccagaagcaacagcag
cagttggcttgcttacagcacagaataggacatgctgcggtctctgtatc
cattctccagtggtccccgctttctgaacactgtcactcaaactgactgc
tatttattcagtattcaacactactttctgtgtggctgctttacttctat
gagtttattatggaaaggcaagatgctgtggtcagatattaaatgcttga
caatgccaaactctgttttgaaaatgacaatcatcttacatttcccagat
gcttacaaatttcaaccactgtctatcctttgaaattgtaatcatcctag
tggccaatctgttatgtttcctggttttactttgcatgttgctccactct
acggatatttacatcgtgactttcacaaatttcaaactgagttttctttt
cacatatcttgtttgcttagaatttattttactatttctagctctgagca
agcagagacacgtgagtgagggcagtcatcccccctctgcgtccagggga
gagcactggggccgctggagctgcccttgttttggatgacagctaattct
ttaacagcgagaggcatttcccccatctctgagtcagggggtatataacc
tgcactctcttttttgaagtttccctgtctcagatttaaaattctgtgat
ctattccaagttgattgtgtgtatgtttttaattaaaggaatatcctgtt
ttcccagccaaattcactaagaacattatacttgtcttgataaattaatt
ctatttttcttaaaaaaattaatagattattctattcctacctgtgttta
accatacagtctttattttgtatatataaatagttttattcatctttcac
atgattagtttgactaattttatattcttgcaactccatataagaccaga
cattatcaagcagacattatgccagcaatccagatgtgcagagcacagaa
tctcctggtgattccagctgactcagtctacaaagcaagttcccaagcta
gcagcctgcacattgagacctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_85130823_85132031
seq2: B6Ng01-322C14.b_43_1255

seq1  GAATTCAGGACCTCTTCTCATTCCATTTGGCCCCATTGGACCCTGCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTTCTCATTCCATTTGGCCCCATTGGACCCTGCTCAC  50

seq1  TCTGTTCTAAAGATTTATTATATCTAAGTACACTGTAGCTGTTTCCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTAAAGATTTATTATATCTAAGTACACTGTAGCTGTTTCCAGAC  100

seq1  GCACCAGAAGAAGGTGTCAGATCTCATTACAGATGGTTGTGAGCCACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGAAGAAGGTGTCAGATCTCATTACAGATGGTTGTGAGCCACCAT  150

seq1  GTGGTTGCTGGGATTTGAACTCAGGACTTTGGAAGAGCAGTCAGTGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGCTGGGATTTGAACTCAGGACTTTGGAAGAGCAGTCAGTGTTCT  200

seq1  TAACCACTGAGCCATCTCTCTAGCCCCACACCTGACTTTTTTTGTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTGAGCCATCTCTCTAGCCCCACACCTGACTTTTTTTGTTTGTT  250

seq1  TGTTTTTTTCTTTCTTTTTTTTTATTAATTTACTTAAATCTTTTTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTCTTTCTTTTTTTTTATTAATTTACTTAAATCTTTTTTTAAT  300

seq1  TAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCTCCAT  350

seq1  ACCCTCCCCCCCACCCCCGTACCCACCCACTCCTACTTTTTGGCCCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCCCCCACCCCCGTACCCACCCACTCCTACTTTTTGGCCCTGGT  400

seq1  GTTCCCCTGTACTGGGGGATATAAAGTTTGCAAGTCCAATGGGCCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCTGTACTGGGGGATATAAAGTTTGCAAGTCCAATGGGCCTCTCT  450

seq1  TTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATATGCAGCTAGAGT  500

seq1  CAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTATTCCACCTATATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTATTCCACCTATATTG  550

seq1  TTTGTTTTTTCGAGACAGGGTTTCACTTTGTAGACCAGGCTGGCCTCGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTCGAGACAGGGTTTCACTTTGTAGACCAGGCTGGCCTCGAA  600

seq1  CTCAGAAATCCGCCTGCTCCTGCCTCCCAAGTGCTCGGATTAAAGGCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCCGCCTGCTCCTGCCTCCCAAGTGCTCGGATTAAAGGCGTG  650

seq1  CGCCACTACTGCCTGGCGACTCTTTTTTTTTTTTTAAATGAAAAGGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACTACTGCCTGGCGACTCTTTTTTTTTTTTTAAATGAAAAGGTTTT  700

seq1  CATGTTTATGAGCACTCTGTCTGCGTAGGTCTTGCATTACTTTACCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTATGAGCACTCTGTCTGCGTAGGTCTTGCATTACTTTACCAACT  750

seq1  GACTGTCTTCCCAGTCCCTTCGTTATGAAATATTTTTTTAAAGATTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCTTCCCAGTCCCTTCGTTATGAAATATTTTTTTAAAGATTTATT  800

seq1  TATTTATTTACTTACTTATTATATGTGTGTACACTGTAGCTGTCTTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTACTTACTTATTATATGTGTGTACACTGTAGCTGTCTTCAGA  850

seq1  CACTCCAGAAGAGGGCATCAGATTTTTGTTATTTGTTACGGATGGTTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGAAGAGGGCATCAGATTTTTGTTATTTGTTACGGATGGTTGTG  900

seq1  AGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACTTTT-GGAAGAACA  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACTTTTAGGAAGAACA  950

seq1  GTCGGTGCTCTTAACCGCCGAGCCATCT-CTCCAGCCCCCTGGTTATGAG  998
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTCGGTGCTCTTAACCGCCGAGCCATCTCCTCCAGCCCCCTGGTTATGAG  1000

seq1  ATTTTAAT-ACTGTTGTTTTACCTTTTCTATGCTAGGTTTACAGGTATGC  1047
      |||||||| |||||||||| ||||||||||||||| ||||||||||||||
seq2  ATTTTAATAACTGTTGTTTAACCTTTTCTATGCTAAGTTTACAGGTATGC  1050

seq1  CTTACCAAGTCTTCCCCTATGCCCAG-CTTATAAGGGTGTAGCTATGAAG  1096
      | |||||||||||||||||||||||| ||||| | |||||||||||| ||
seq2  CCTACCAAGTCTTCCCCTATGCCCAGCCTTATTAAGGTGTAGCTATG-AG  1099

seq1  AATACAGTGGCAACTAGCTTACTTTGAGGCTTCTG-CCATGACCAC-TG-  1143
      ||||||||| || ||||||||| |||| ||||||| |||||| ||| || 
seq2  AATACAGTGTCACCTAGCTTACCTTGA-GCTTCTGCCCATGAACACATGA  1148

seq1  ATCGATCAGGCACTC-CAAGTTTTACCAAGCATTGCTTTGTACATGTGCA  1192
      |||||||| |  ||| |||| |||||  ||||||||||  | |||  |||
seq2  ATCGATCATGACCTCTCAAG-TTTAC--AGCATTGCTTGTTCCATTGGCA  1195

seq1  TGG-GTCAACACAGCCCA  1209
      |||  |  ||||||||||
seq2  TGGTCTACACACAGCCCA  1213

seq1: chr11_85303179_85304307
seq2: B6Ng01-322C14.g_68_1191 (reverse)

seq1  GACAGGGTCTCATTGTGCAGCCTTGGCTGGCTT-GGAACTTGCTTTGTAG  49
      |||| ||||||| ||||||| ||  ||| |||| ||||||||||||||||
seq2  GACA-GGTCTCAATGTGCAGGCT--GCTAGCTTGGGAACTTGCTTTGTAG  47

seq1  ACTGAGTCAGCCTTGAATCCACA-GAGA-TCTGTGCCTCTGCACATCCTG  97
      |||||||||| || |||||  || |||| |||||| |||||||||||   
seq2  ACTGAGTCAG-CTGGAATCACCAGGAGATTCTGTG-CTCTGCACATC--T  93

seq1  GGATTGCTGGCATAATGTCTGCTTGATAATGTCTGGTCTTATATGGAGTT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCTGGCATAATGTCTGCTTGATAATGTCTGGTCTTATATGGAGTT  143

seq1  GCAAAGAATATAAAATTAGTCAAACTAATCATGTGAAAGATGAATAAAAC  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-AAGAATATAAAATTAGTCAAACTAATCATGTGAAAGATGAATAAAAC  192

seq1  TATTTATATATACAAAATAAAGACTGTATGGTTAAACACAGGTAGGAATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATATACAAAATAAAGACTGTATGGTTAAACACAGGTAGGAATA  242

seq1  GAATAATCTATTAATTTTTTTAAGAAAAATAGAATTAATTTATCAAGACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATCTATTAATTTTTTTAAGAAAAATAGAATTAATTTATCAAGACA  292

seq1  AGTATAATGTTCTTAGTGAATTTGGCTGGGAAAACAGGATATTCCTTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATGTTCTTAGTGAATTTGGCTGGGAAAACAGGATATTCCTTTAA  342

seq1  TTAAAAACATACACACAATCAACTTGGAATAGATCACAGAATTTTAAATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACATACACACAATCAACTTGGAATAGATCACAGAATTTTAAATC  392

seq1  TGAGACAGGGAAACTTCAAAAAAGAGAGTGCAGGTTATATACCCCCTGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGAAACTTCAAAAAAGAGAGTGCAGGTTATATACCCCCTGAC  442

seq1  TCAGAGATGGGGGAAATGCCTCTCGCTGTTAAAGAATTAGCTGTCATCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATGGGGGAAATGCCTCTCGCTGTTAAAGAATTAGCTGTCATCCA  492

seq1  AAACAAGGGCAGCTCCAGCGGCCCCAGTGCTCTCCCCTGGACGCAGAGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGGCAGCTCCAGCGGCCCCAGTGCTCTCCCCTGGACGCAGAGGG  542

seq1  GGGATGACTGCCCTCACTCACGTGTCTCTGCTTGCTCAGAGCTAGAAATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGACTGCCCTCACTCACGTGTCTCTGCTTGCTCAGAGCTAGAAATA  592

seq1  GTAAAATAAATTCTAAGCAAACAAGATATGTGAAAAGAAAACTCAGTTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATAAATTCTAAGCAAACAAGATATGTGAAAAGAAAACTCAGTTTG  642

seq1  AAATTTGTGAAAGTCACGATGTAAATATCCGTAGAGTGGAGCAACATGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTGAAAGTCACGATGTAAATATCCGTAGAGTGGAGCAACATGCA  692

seq1  AAGTAAAACCAGGAAACATAACAGATTGGCCACTAGGATGATTACAATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAACCAGGAAACATAACAGATTGGCCACTAGGATGATTACAATTT  742

seq1  CAAAGGATAGACAGTGGTTGAAATTTGTAAGCATCTGGGAAATGTAAGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATAGACAGTGGTTGAAATTTGTAAGCATCTGGGAAATGTAAGAT  792

seq1  GATTGTCATTTTCAAAACAGAGTTTGGCATTGTCAAGCATTTAATATCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCATTTTCAAAACAGAGTTTGGCATTGTCAAGCATTTAATATCTG  842

seq1  ACCACAGCATCTTGCCTTTCCATAATAAACTCATAGAAGTAAAGCAGCCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCATCTTGCCTTTCCATAATAAACTCATAGAAGTAAAGCAGCCA  892

seq1  CACAGAAAGTAGTGTTGAATACTGAATAAATAGCAGTCAGTTTGAGTGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAGTAGTGTTGAATACTGAATAAATAGCAGTCAGTTTGAGTGAC  942

seq1  AGTGTTCAGAAAGCGGGGACCACTGGAGAATGGATACAGAGACCGCAGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCAGAAAGCGGGGACCACTGGAGAATGGATACAGAGACCGCAGCA  992

seq1  TGTCCTATTCTGTGCTGTAAGCAAGCCAACTGCTGCTGTTGCTTCTGGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTATTCTGTGCTGTAAGCAAGCCAACTGCTGCTGTTGCTTCTGGTG  1042

seq1  AACAGACCCAGAACTCCTGTGTGGGTGCTCTTTGACAAGGTCTTACACAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCCAGAACTCCTGTGTGGGTGCTCTTTGACAAGGTCTTACACAC  1092

seq1  CGTCTCAGTCCTAAAGCAGGCAGTATGAATTC  1129
      ||||||||||||||||||||||||||||||||
seq2  CGTCTCAGTCCTAAAGCAGGCAGTATGAATTC  1124