BAC Information

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BAC

Clone NameB6Ng01-322G03
Chromosome11 (Build37)
Map Location 83,789,878 - 83,928,796
singlet/doubletdoublet
Overlap geneAp1gbp1, Dusp14, Tada2l
Upstream geneSlfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52
Downstream geneOTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322G03.bB6Ng01-322G03.g
ACCGA111237GA111238
length9751,087
definitionB6Ng01-322G03.b B6Ng01-322G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,928,236 - 83,928,796)(83,789,878 - 83,790,961)
sequence
gaattctgcctactatgtaattcacaacacatttatgtgtgttttttaaa
agattagaaagaagctgggcgtggtggcgcacgcctttaatcccagcccg
gctgaggcaggtggctctgtgagtttgaggccagcctggtttacatattg
agctccaagccagagtcctggattccatccttactgccacataaaaccag
acatagtggtacacagaaaggacctgggaacacttgggaaattaagccag
aatgaccagtagtcaaagggctttctcattttctacatgggaaatttaag
gctagccagggatacataagaccctgtttcaaaagtaaaataaaacagaa
agaaaatcgacctgaatttgatcatttgttggttcctgctactgtacctg
tgccttcaatactgggagtcatgttctggactataatcaattagtcaaag
aaaagcaacttaagagttttgggagagtaactagctgccttcccttacac
tttccagtctctccttttaaaaatatttattttcgctgggcgtggttgcg
cacgtctttaatcctagcactcaggaggcagaggcaggcggatttctgag
ttcaaggccagccaggtctacagagtgagttccaggacagccagggctac
acagagaaaccctgtctcgaaaaaaccaaaaccaaaaaaaaaaatactta
tttttattatttttaattatgtgtcggtgtgtgtgcttgcatgtgggtat
gcgcatgtgagttcagatgccagcttaggccagagacatctgatcatttg
gagctggagttacagttgtgaggcacttgacgtgggctctggtgcccaag
ctcaggccctcgggaagaggagcaagtgctcctcagcaggcccttctcca
gcctgcagtctctctaacttctaaagcttttgatgtagggtctcatgtag
ctcagctggcctcacacttgtcatg
gaattcaagcggggctttgctggaggttctggctcagagcatcttgtgag
tggtagtaaagctgtcaggcagatttgcaggcatcggaaagttttgtgga
gtggaaagatgtgctgttcctaggatgtagcagggcctccccagcacaaa
cactccaaaaaagcaagaagataacaactgcccttgggagccaaggtgca
gtggcacacatcagtagttgcaacttttggagatggaggcaggagggtcg
gtcaggccagcccttcagtcacataagatcttctctcaaaaagaatgagg
ctgggagttatatgttgtcatcagcacagtatcctgctaactgtacgagg
tcagcatgagcggaaacgatacaagcttatgaataccaacggggcagaaa
tccctggggcccatggtgaagatgactgagcaccgtatttaggccatgct
attcatttcatagccacattcaagttctgcagaaccaatattgttttcat
ttaacaaatgaaattctatagcttgccgaagatcacatagctaagctgat
gatggaatgctcattcatgcctgtctcgttaggaccttgtgctctttcca
ttgtagtatgcagtttttcagttagccagccctctggatgttcctgtttc
aaggaaacaaaccttcgaacatgttgactttaacaaagccttggtgtttt
ccagcaggcctgattccaatgcaacagcaaggattccctatggtctctgt
catgcagcccaatatgcaaggcatgatgggaatgaattacagctctcaga
tgtcccaaggaccgattgcaatgcaggtacttgcttcttagttgattgtt
tataaggttatttaacattattataaagcttgtttctgggcatctgcatg
tcaagagctatgtctcgatgttgtctttagcaatagtttgcatttttaat
ggagttttattatatctgggttcaagggatcccctttgtcttggcctccc
aagtaggtagaattgtaagtgtacggcacgtgcagtcaactcaaagactt
cacaacatgcctagccacctgtctttgttcaactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83928236_83928796
seq2: B6Ng01-322G03.b_42_602 (reverse)

seq1  TTAAAGACGTGCGCAACCACGCCCAGCGAAAATAAATATTTTTAAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACGTGCGCAACCACGCCCAGCGAAAATAAATATTTTTAAAAGGA  50

seq1  GAGACTGGAAAGTGTAAGGGAAGGCAGCTAGTTACTCTCCCAAAACTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGGAAAGTGTAAGGGAAGGCAGCTAGTTACTCTCCCAAAACTCTT  100

seq1  AAGTTGCTTTTCTTTGACTAATTGATTATAGTCCAGAACATGACTCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTTTTCTTTGACTAATTGATTATAGTCCAGAACATGACTCCCAG  150

seq1  TATTGAAGGCACAGGTACAGTAGCAGGAACCAACAAATGATCAAATTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGGCACAGGTACAGTAGCAGGAACCAACAAATGATCAAATTCAG  200

seq1  GTCGATTTTCTTTCTGTTTTATTTTACTTTTGAAACAGGGTCTTATGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGATTTTCTTTCTGTTTTATTTTACTTTTGAAACAGGGTCTTATGTAT  250

seq1  CCCTGGCTAGCCTTAAATTTCCCATGTAGAAAATGAGAAAGCCCTTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTAGCCTTAAATTTCCCATGTAGAAAATGAGAAAGCCCTTTGAC  300

seq1  TACTGGTCATTCTGGCTTAATTTCCCAAGTGTTCCCAGGTCCTTTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTCATTCTGGCTTAATTTCCCAAGTGTTCCCAGGTCCTTTCTGTG  350

seq1  TACCACTATGTCTGGTTTTATGTGGCAGTAAGGATGGAATCCAGGACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTATGTCTGGTTTTATGTGGCAGTAAGGATGGAATCCAGGACTCT  400

seq1  GGCTTGGAGCTCAATATGTAAACCAGGCTGGCCTCAAACTCACAGAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGAGCTCAATATGTAAACCAGGCTGGCCTCAAACTCACAGAGCCA  450

seq1  CCTGCCTCAGCCGGGCTGGGATTAAAGGCGTGCGCCACCACGCCCAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCAGCCGGGCTGGGATTAAAGGCGTGCGCCACCACGCCCAGCTT  500

seq1  CTTTCTAATCTTTTAAAAAACACACATAAATGTGTTGTGAATTACATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAATCTTTTAAAAAACACACATAAATGTGTTGTGAATTACATAGT  550

seq1  AGGCAGAATTC  561
      |||||||||||
seq2  AGGCAGAATTC  561

seq1: chr11_83789878_83790961
seq2: B6Ng01-322G03.g_66_1152

seq1  GAATTCAAGCGGGGCTTTGCTGGAGGTTCTGGCTCAGAGCATCTTGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCGGGGCTTTGCTGGAGGTTCTGGCTCAGAGCATCTTGTGAG  50

seq1  TGGTAGTAAAGCTGTCAGGCAGATTTGCAGGCATCGGAAAGTTTTGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTAAAGCTGTCAGGCAGATTTGCAGGCATCGGAAAGTTTTGTGGA  100

seq1  GTGGAAAGATGTGCTGTTCCTAGGATGTAGCAGGGCCTCCCCAGCACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGATGTGCTGTTCCTAGGATGTAGCAGGGCCTCCCCAGCACAAA  150

seq1  CACTCCAAAAAAGCAAGAAGATAACAACTGCCCTTGGGAGCCAAGGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAAAAAAGCAAGAAGATAACAACTGCCCTTGGGAGCCAAGGTGCA  200

seq1  GTGGCACACATCAGTAGTTGCAACTTTTGGAGATGGAGGCAGGAGGGTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACACATCAGTAGTTGCAACTTTTGGAGATGGAGGCAGGAGGGTCG  250

seq1  GTCAGGCCAGCCCTTCAGTCACATAAGATCTTCTCTCAAAAAGAATGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCCAGCCCTTCAGTCACATAAGATCTTCTCTCAAAAAGAATGAGG  300

seq1  CTGGGAGTTATATGTTGTCATCAGCACAGTATCCTGCTAACTGTACGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTTATATGTTGTCATCAGCACAGTATCCTGCTAACTGTACGAGG  350

seq1  TCAGCATGAGCGGAAACGATACAAGCTTATGAATACCAACGGGGCAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGAGCGGAAACGATACAAGCTTATGAATACCAACGGGGCAGAAA  400

seq1  TCCCTGGGGCCCATGGTGAAGATGACTGAGCACCGTATTTAGGCCATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGGCCCATGGTGAAGATGACTGAGCACCGTATTTAGGCCATGCT  450

seq1  ATTCATTTCATAGCCACATTCAAGTTCTGCAGAACCAATATTGTTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTCATAGCCACATTCAAGTTCTGCAGAACCAATATTGTTTTCAT  500

seq1  TTAACAAATGAAATTCTATAGCTTGCCGAAGATCACATAGCTAAGCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAATGAAATTCTATAGCTTGCCGAAGATCACATAGCTAAGCTGAT  550

seq1  GATGGAATGCTCATTCATGCCTGTCTCGTTAGGACCTTGTGCTCTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAATGCTCATTCATGCCTGTCTCGTTAGGACCTTGTGCTCTTTCCA  600

seq1  TTGTAGTATGCAGTTTTTCAGTTAGCCAGCCCTCTGGATGTTCCTGTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTATGCAGTTTTTCAGTTAGCCAGCCCTCTGGATGTTCCTGTTTC  650

seq1  AAGGAAACAAACCTTCGAACATGTTGACTTTAACAAAGCCTTGGTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAAACCTTCGAACATGTTGACTTTAACAAAGCCTTGGTGTTTT  700

seq1  CCAGCAGGCCTGATTCCAATGCAACAGCAAGGATTCCCTATGGTCTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGCCTGATTCCAATGCAACAGCAAGGATTCCCTATGGTCTCTGT  750

seq1  CATGCAGCCCAATATGCAAGGCATGATGGGAATGAATTACAGCTCTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGCCCAATATGCAAGGCATGATGGGAATGAATTACAGCTCTCAGA  800

seq1  TGTCCCAAGGACCGATTGCAATGCAGGTACTTGCTTCTTAGTTGATTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAAGGACCGATTGCAATGCAGGTACTTGCTTCTTAGTTGATTGTT  850

seq1  TATAAGGTTATTTAACATTATTATAAAGCTTGTTTCTGGGCATCTGCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGTTATTTAACATTATTATAAAGCTTGTTTCTGGGCATCTGCATG  900

seq1  TCAAGAGCTATGTCTCGATGTTGTCTTTAGCAATAGTTTGCATTTTTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGCTATGTCTCGATGTTGTCTTTAGCAATAGTTTGCATTTTTAAT  950

seq1  GGAGTTTTATTATATCTGGGTTCAAAGGATCCCCTTTGTCTTGGCCTCCC  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAGTTTTATTATATCTGGGTTCAAGGGATCCCCTTTGTCTTGGCCTCCC  1000

seq1  AAGTAGGTAGAATTGTAGGTGTACGGCACGTGCAGTTCAAACTCAAAGAC  1050
      ||||||||||||||||| ||||||||||||||||||   |||||||||||
seq2  AAGTAGGTAGAATTGTAAGTGTACGGCACGTGCAGT--CAACTCAAAGAC  1048

seq1  -TCAC-ACATG-CTAGGCAACTGTCTTTGT--CACTTTT  1084
       |||| ||||| |||| || ||||||||||   ||||||
seq2  TTCACAACATGCCTAGCCACCTGTCTTTGTTCAACTTTT  1087