BAC Information

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BAC

Clone NameB6Ng01-323H15
Chromosome12 (Build37)11 (Build37)
Map Location 108,655,745 - 108,656,39166,251,713 - 66,252,181
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700121N20Rik, LOC100041191, LOC100040451, LOC673604, LOC100040484, LOC382635
Downstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1, Eml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323H15.bB6Ng01-323H15.g
ACCGA112041GA112042
length649355
definitionB6Ng01-323H15.b B6Ng01-323H15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,655,745 - 108,656,391)(66,251,713 - 66,252,181)
sequence
gaattcttgtttaactctccagagtttactcacctttccttctgtctttt
ttcatcacagcagacacatcatcaacagacacactcttagagaattctca
gcaacatgccttgcgtctcttcttgggcacttgtaactctcgcattcatg
gatggatcatacaaagagataaactaaatactgagaaccataaccccccg
cttcttgcaaatttccatccaacacaaaatatgaagtgattgaagttcac
acgaatgtataaacagagaatcttacttctccagagtgcttgtggatgaa
tctaccaaggcggctcccttccccctcacaaggatcctatttgttagagg
taaaaggagctctctcctctctgtctccattctcatttccattgacctga
tgcttcatcatttggtaagagcgtgtgagttgtccaaggacagagatgat
gttgaaatccacctcatccccattccacacatgcatccccactcccacaa
gctagagatggaagttaataaaagaggaggaagaagagaaggaggaggag
caggagggggaaaggaggaaaagggagaattgaaaggatgaggagattgg
gctcaggaaataagatggtttctcgtttgatgatggactatgaagtgaa

tttccccaggaagagactgggtgtgtaattgctgtgctgatgaggacatt
ggtggaacccgtggggctcactggcctaccatccaagttgcttggtaagc
tcaggctaatgatagatcagctcttaaaaagcaaggtgaaggccatcgga
agaacactgcctgaggttgtcttctgacttctacagacacaagcactcac
tcatctggacacacacacacacacacacacacacacacacacacacacac
acagagagagagagagagagagagagagagagagagagagaaagagaggg
agaaagagagagagagagagaaagagagagagagagagagagagagagag
agaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_108655745_108656391
seq2: B6Ng01-323H15.b_50_698

seq1  GAATTCTTGTTTAACTCTCCAGAGTTTACTCACCTTTCCTTCTGTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTAACTCTCCAGAGTTTACTCACCTTTCCTTCTGTCTTTT  50

seq1  TTCATCACAGCAGACACATCATCAACAGACACACTCTTAGAGAATTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACAGCAGACACATCATCAACAGACACACTCTTAGAGAATTCTCA  100

seq1  GCAACATGCCTTGCGTCTCTTCTTGGGCACTTGTAACTCTCGCATTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATGCCTTGCGTCTCTTCTTGGGCACTTGTAACTCTCGCATTCATG  150

seq1  GATGGATCATACAAAGAGATAAACTAAATACTGAGAACCATAACCCCCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATCATACAAAGAGATAAACTAAATACTGAGAACCATAACCCCCCG  200

seq1  CTTCTTGCAAATTTCCATCCAACACAAAATATGAAGTGATTGAAGTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCAAATTTCCATCCAACACAAAATATGAAGTGATTGAAGTTCAC  250

seq1  ACGAATGTATAAACAGAGAATCTTACTTCTCCAGAGTGCTTGTGGATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATGTATAAACAGAGAATCTTACTTCTCCAGAGTGCTTGTGGATGAA  300

seq1  TCTACCAAGGCGGCTCCCTTCCCCCTCACAAGGATCCTATTTGTTAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAAGGCGGCTCCCTTCCCCCTCACAAGGATCCTATTTGTTAGAGG  350

seq1  TAAAAGGAGCTCTCTCCTCTCTGTCTCCATTCTCATTTCCATTGACCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAGCTCTCTCCTCTCTGTCTCCATTCTCATTTCCATTGACCTGA  400

seq1  TGCTTCATCATTTGGTAAGAGCGTGTGAGTTGTCCAAGGACAGAGATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATCATTTGGTAAGAGCGTGTGAGTTGTCCAAGGACAGAGATGAT  450

seq1  GTTGAAATCCACCTCATCCCCATTCCACACATGCATCCCCACTCCCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATCCACCTCATCCCCATTCCACACATGCATCCCCACTCCCACAA  500

seq1  GCTAGAGATGGAAGTTAATAAAAGAGGAGGAAGAAGAGAAGGAGGAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGATGGAAGTTAATAAAAGAGGAGGAAGAAGAGAAGGAGGAGGAG  550

seq1  CAGGAGGGGGAAAGGAGGAAAAGGGAGAATTG-AAGGATGAGGAGATTGG  599
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGAGGGGGAAAGGAGGAAAAGGGAGAATTGAAAGGATGAGGAGATTGG  600

seq1  GCTCAGGAAAGAAGATGGCTTCACG-GTGATGATGGACAAGGAAGTGAA  647
      |||||||||| ||||||| ||| ||  ||||||||||| | ||||||||
seq2  GCTCAGGAAATAAGATGGTTTCTCGTTTGATGATGGACTATGAAGTGAA  649


seq1: chr11_66251713_66252181
seq2: B6Ng01-323H15.g_301_425 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGTGTGTGTGTGTGTGTGTGTACGTGTATGTATATATGCCCATGTGTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCTGCATGCATCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTACGTATA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TATGCCCATGTGTGTGCCTGCATGCATCTCTTTCTCTCTCTCTCTCTCTC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTACATGTATGTATATATGCC  250
                                                        
seq2  --------------------------------------------------  0

seq1  CATGTGTGTGCCTGCATGCATCTCTCTCTCTCTTTCTCTCTCTCTCTCTC  300
                                                    ||||
seq2  ----------------------------------------------TCTC  4

seq1  TCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTACA  350
      ||| ||||||||||||||||||||||||| ||||||              
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTC--------------  40

seq1  TGTATGTATATATGCCCATGTGTGTGCCTGCATGCATCTCTCTCTCTTTC  400
                                          ||||||||||||||
seq2  ------------------------------------TCTCTCTCTCTTTC  54

seq1  T--CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG  448
      |  |||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTG  104

seq1  TGTGTGTGTGTGTGTGTGTGT  469
      |||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGT  125


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