BAC Information

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BAC

Clone NameB6Ng01-323M14
Chromosome12 (Build37)11 (Build37)
Map Location 8,846,421 - 8,847,53187,083,516 - 87,083,700
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1
Downstream geneLaptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238, Osr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323M14.bB6Ng01-323M14.g
ACCGA112274GA112275
length1,112452
definitionB6Ng01-323M14.b B6Ng01-323M14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,846,421 - 8,847,531)(87,083,516 - 87,083,700)
sequence
gaattcaaccttcttttcgggtattctctttaccagttagcactaaaaca
ggaaggacagtgctgttggaacctaaaagatgaccaccaggccttgcgtt
ctgatttctgcctgctctgtactccagtgagctttgcccatttatagaaa
ctctgtgggatttggaagcccaggcaattccggccgtcccatggccatcg
gcatgcccatgatcaaggcaggcccattgggtacagatggcagagcttgc
cagcaaataggaagtgacagggtggtctgtggggaattcatttgccaatt
agtgacttgtctcagcccagtctctggtctccacatgtccacggtttata
tcttaccccgtgcagctgaggtttgcatgcagatctgccaggcaaccctg
gaaaagccagccatgaacaccaaatgaacctcagccccagaagttttcca
tatccttctagacgttcacagactaagtcctctccatatgcttcaggaaa
tgtaccaggaagaaatcaaattaactccaccattgtcccctcacttaagg
gggcatgtgtctcccatctaaatggctacgaggcagtgagcagcctttca
agtaagccttatatcctcattgatttttattataaaattgggatttcttt
ttttctggaggccaaaaagccaaaacaaaacaactctggccatctaaata
caacttttaaacatcctacttgaggtctagaagacctaagcatatcatgt
atggaaaatgtaaacacagaagaaactcaataagatatacatattaataa
cacaagcccataaaacagtgattctcaacttgtggattatgacccattta
ggggttgagtggctctttcacaggggtgacctaagaccatcagaaaatac
agattatgattcataacaatggcaaaatcacaaagtagcaatgaaaataa
ttgtatggttgaggatcaccacaaaagtgaggaactatataaaagggtca
cagcatcaggaaggtgagaacactgcttgatagagagacaagaacattga
ctactgtcttcaagtcagtcttgtaacatggtgagtcgggaggcagaaaa
gccacagcgcca
gaattccaggaacccagggctacacagagaaaccttatcttgaaaatatc
ccacaaaacagttctcaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgagagcgagaaccatgattggagagccagtaggttc
catgcaagttgacaaagaaggggagtaaccggtaggactacgcagttata
atgcttatgaaccatgacaatgaatgaccagtacagtaagatatccataa
aggtgtaatggcgggtcccatgttgggaatctaacattaaacagtaaggc
ctagctgggcagtggtggcacatgccttgattcctagccacttgggatgc
agaggcaggcttatttctgagttcgaggtctacagagtgagttccacgac
agctagggatatacagagaaaccctgtctcaaacaaaaacaaaaacaaaa
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8846421_8847531
seq2: B6Ng01-323M14.b_50_1161

seq1  GAATTCAACCTTCTTTTCGGGTATTCTCTTTACCAGTTAGCACTAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTTCTTTTCGGGTATTCTCTTTACCAGTTAGCACTAAAACA  50

seq1  GGAAGGACAGTGCTGTTGGAACCTAAAAGATGACCACCAGGCCTTGCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACAGTGCTGTTGGAACCTAAAAGATGACCACCAGGCCTTGCGTT  100

seq1  CTGATTTCTGCCTGCTCTGTACTCCAGTGAGCTTTGCCCATTTATAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTGCCTGCTCTGTACTCCAGTGAGCTTTGCCCATTTATAGAAA  150

seq1  CTCTGTGGGATTTGGAAGCCCAGGCAATTCCGGCCGTCCCATGGCCATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGGATTTGGAAGCCCAGGCAATTCCGGCCGTCCCATGGCCATCG  200

seq1  GCATGCCCATGATCAAGGCAGGCCCATTGGGTACAGATGGCAGAGCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCCATGATCAAGGCAGGCCCATTGGGTACAGATGGCAGAGCTTGC  250

seq1  CAGCAAATAGGAAGTGACAGGGTGGTCTGTGGGGAATTCATTTGCCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATAGGAAGTGACAGGGTGGTCTGTGGGGAATTCATTTGCCAATT  300

seq1  AGTGACTTGTCTCAGCCCAGTCTCTGGTCTCCACATGTCCACGGTTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTGTCTCAGCCCAGTCTCTGGTCTCCACATGTCCACGGTTTATA  350

seq1  TCTTACCCCGTGCAGCTGAGGTTTGCATGCAGATCTGCCAGGCAACCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCCGTGCAGCTGAGGTTTGCATGCAGATCTGCCAGGCAACCCTG  400

seq1  GAAAAGCCAGCCATGAACACCAAATGAACCTCAGCCCCAGAAGTTTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCAGCCATGAACACCAAATGAACCTCAGCCCCAGAAGTTTTCCA  450

seq1  TATCCTTCTAGACGTTCACAGACTAAGTCCTCTCCATATGCTTCAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTCTAGACGTTCACAGACTAAGTCCTCTCCATATGCTTCAGGAAA  500

seq1  TGTACCAGGAAGAAATCAAATTAACTCCACCATTGTCCCCTCACTTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAGGAAGAAATCAAATTAACTCCACCATTGTCCCCTCACTTAAGG  550

seq1  GGGCATGTGTCTCCCATCTAAATGGCTACGAGGCAGTGAGCAGCCTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGTGTCTCCCATCTAAATGGCTACGAGGCAGTGAGCAGCCTTTCA  600

seq1  AGTAAGCCTTATATCCTCATTGATTTTTATTATAAAATTGGGATTTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCCTTATATCCTCATTGATTTTTATTATAAAATTGGGATTTCTTT  650

seq1  TTTTCTGGAGGCCAAAAAGCCAAAACAAAACAACTCTGGCCATCTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGAGGCCAAAAAGCCAAAACAAAACAACTCTGGCCATCTAAATA  700

seq1  CAACTTTTAAACATCCTACTTGAGGTCTAGAAGACCTAAGCATATCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTAAACATCCTACTTGAGGTCTAGAAGACCTAAGCATATCATGT  750

seq1  ATGGAAAATGTAAACACAGAAGAAACTCAATAAGATATACATATTAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATGTAAACACAGAAGAAACTCAATAAGATATACATATTAATAA  800

seq1  CACAAGCCCATAAAACAGTGATTCTCAACTTGTGGATTATGACCCATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCCATAAAACAGTGATTCTCAACTTGTGGATTATGACCCATTTA  850

seq1  GGGGTTGAGTGGCTCTTTCACAGGGGTGACCTAAGACCATCAGAAAATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGAGTGGCTCTTTCACAGGGGTGACCTAAGACCATCAGAAAATAC  900

seq1  AGATTATGATTCATAACAATGGCAAAATCACAAAGTAGCAATGAAAATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGATTCATAACAATGGCAAAATCACAAAGTAGCAATGAAAATAA  950

seq1  TTGTATGGTTGAGGATCACCAC-AAAGTGAGGAACTATATTAAAGGGTCA  999
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TTGTATGGTTGAGGATCACCACAAAAGTGAGGAACTATATAAAAGGGTCA  1000

seq1  CAGCATCAGGAAGGTTGAGAACCACTGC-TGATAGAGAAGACAAG-ACAT  1047
      |||||||||||||| |||||| |||||| |||||||| ||||||| ||||
seq2  CAGCATCAGGAAGG-TGAGAA-CACTGCTTGATAGAG-AGACAAGAACAT  1047

seq1  TGACTACTGTCTTCAAGTCAGTCTTGT-ACAT-GTGAGGTCGGGGAGGCA  1095
      ||||||||||||||||||||||||||| |||| |||| ||| ||||||||
seq2  TGACTACTGTCTTCAAGTCAGTCTTGTAACATGGTGA-GTC-GGGAGGCA  1095

seq1  G-AGAGCCACAGCGCCA  1111
      | | |||||||||||||
seq2  GAAAAGCCACAGCGCCA  1112

seq1: chr11_87083516_87083700
seq2: B6Ng01-323M14.g_371_516 (reverse)

seq1  GTTTTTGTTTTTGTTTTTTTTGGGGGGGGGTGTTTTGTTTGTTTGTTTGT  50
      |||||||||||||||                          |||||||| 
seq2  GTTTTTGTTTTTGTT--------------------------TTTGTTTG-  23

seq1  TTCAAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCT  100
          ||||||||||||||||| ||  ||| |||||| |||||||||||||
seq2  ----AGACAGGGTTTCTCTGTATATCCCTAGCTGTCGTGGAACTCACTCT  69

seq1  GTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCA  150
      |||||         |||| |||||||||||  |||||||||||| |||||
seq2  GTAGA---------CCTCGAACTCAGAAATAAGCCTGCCTCTGCATCCCA  110

seq1  AGT-GCTTGGATTAAAGGTGTGCACCACCACTGCCC  185
      ||| ||| ||| | ||||  ||  ||||||||||||
seq2  AGTGGCTAGGAATCAAGGCATGTGCCACCACTGCCC  146