BAC Information

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BAC

Clone NameB6Ng01-323O05
Chromosome11 (Build37)
Map Location 19,178,110 - 19,285,032
singlet/doubletdoublet
Overlap geneLOC635455
Upstream geneLOC627716, LOC665796, Meis1
Downstream geneLOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323O05.bB6Ng01-323O05.g
ACCGA112345GA112346
length1,0731,175
definitionB6Ng01-323O05.b B6Ng01-323O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,283,939 - 19,285,032)(19,178,110 - 19,179,283)
sequence
gaattccatggcaatcatctgaacttcactggaatctgtagtaacgtccc
ctttattacctcgaattttattaatttgagtctactttctttttcttttt
tttttttattacaatatctcaagtgggatttatttggtggaccacaatac
gttctcagaacatttgctgtaactcaggtagaaacaggcaagtattcaca
ttagtctatagtccaaaaaaggtatttcaactaaaatatgtcaattctca
catctgcagtggcttagagatagatggtcagtgttgtgtttctgcagctt
cttcaagcagaggtacagtgctcaatgctttagagggtttagcaaattca
tttcccttttgttcaacaatgcctcatctccactatgtaaaacctagtct
ccagtgccactatctattatctgccttacgttaggtcttacttcagattg
cacaaagtgattacgttataaaaggcctccagatcacttggttcaaatgt
tacagatggcttcagtaatgattcaggagcaagggaacttcctccaatga
ttctcaggtttataaatttgattttccaagtattttccacaaaagggcta
cggataagtccaaaaatttgctcaaatatgcccaaacaagaatttcctcg
gtggacagtccctgcaactccaaccataactaatccatgaggagaagatg
cacattttagtccttgagaatcaaggctgggactgagaaagagaaattcc
tctttaactaatgacagtgagcgaaggctcacgatttctgctccttggta
gtctgtcgtgttttgttctgaggtgttataataaaacctaagcttggcgt
catgccaaagtgctgtgggccccagtcatcttgaggtgggcccagaaaag
aattctgagaattagaagttcaaagaccagtgacagattcttctcctaag
cgatgaaaatcacttttcagctgctttatcttcttgcctgctgcttcaga
gctgatgcctcatctctgtactgcttgctggtccttcagtttggtgactg
tttcctagtatctttgcatactg
gaattcctttaaccaacctcacactgcaagaaggctctgctggtgtccac
ttgagagatgagtctaccagactgaagtgaattagtttaaatatatgctt
ggacttaattggctcactaataaaaaaaaaactttcactattcatttaac
aaatgtttttatacttctcttatggaacaaagattacactaacatctaat
atgagtggggcatggttttgtttttacctttccacttattttttgagcaa
ttttgaagattaaaagtactattccccaaaagtttggaagaaatttctct
taatgttgcccatgcctgaaacagtttgtaaatctataattactatttta
atttattttgtggttacttttctatagatgggttgttttttacctccttc
agattttgcattttatgttgttcagaaacgtcatgattttctactttaaa
gccaaatatttcattgcaaatcatgctttagtgatgacttccaaactata
tattatttcatttttatttagtttaaaatatttcttaaaaatgcctattt
tttgagagactttgaaaaagtatgtgttttcttttccagaaatatgatca
ttttaaaagaatttttttatatttcttgttgagacttggcatttcggctc
aacaatcccattgttttgaaggctgggagaagaggttcaacagtcccatt
ggtttgaaggctggtggaagtggttcatcgtgagttcaagcccaatcttt
gctatataataagttccagaccagcctaggctggagagtgaagccctacc
ctcaaaaataaatgaatgaaaaagtaaataaattcattattgattttaaa
tatattggattataaacttaaaagcttaagtcattatgtcattaatcttt
catatgtattggagttggcatgtgtgctttaatatagcttatttttggtg
tattcttgtccatggatgtttttatgtgatgtccaacagattgtacttcc
tctaatgcatttttcataatggtattttaaaatagagaaaagcagagata
agaaggtcttggagattatatccatgttcattctgttttctaacatcggc
atcttaaatgccttgaatgcttcggcaactggaacgcgacttaagtctca
gcgactggggaagttactcccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_19283939_19285032
seq2: B6Ng01-323O05.b_48_1120 (reverse)

seq1  CAGTATGCAAAAGATTACTAGGGAAAACAGTCACCAAAACTGAAGGACAC  50
      |||||||| ||||| |||||||  ||||||||||| |||||||||||| |
seq2  CAGTATGC-AAAGA-TACTAGG--AAACAGTCACC-AAACTGAAGGAC-C  44

seq1  AGCAGAGCCAGTTACAGAGATGGAGGCCATCCAGCTCTTGGAGCAGCAGG  100
      |||| || ||| ||||||||| |||| ||| |||||| || |||||||||
seq2  AGCA-AG-CAG-TACAGAGAT-GAGG-CAT-CAGCTC-TGAAGCAGCAGG  87

seq1  CAAAGGAAGATAAAGCAGCTGAAAAGGTTGATTTTCATCGCTTAGGAGAA  150
      |||  |||||||||||||||||||||  ||||||||||||||||||||||
seq2  CAA--GAAGATAAAGCAGCTGAAAAG--TGATTTTCATCGCTTAGGAGAA  133

seq1  GAATTCTGTCACTGGTTCTTTGAACTTCTTAATTCTCAGAATTCTTTTCT  200
      ||| ||||||||||| |||||||||||| |||||||||||||||||||||
seq2  GAA-TCTGTCACTGG-TCTTTGAACTTC-TAATTCTCAGAATTCTTTTCT  180

seq1  GGGCCCACCTCAAGATGACTGGGGCCCACAGCACTTTTGGCATGACGCCA  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGCCCACCTCAAGATGACTGGGGCCCACAGCAC-TTTGGCATGACGCCA  229

seq1  AGCTTAGGTTTTATTATAACACCTCAGAACAAAACACGACAGACTACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGTTTTATTATAACACCTCAGAACAAAACACGACAGACTACCAA  279

seq1  GGAGCAGAAATCGTGAGCCTTCGCTCACTGTCATTAGTTAAAGAGGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAAATCGTGAGCCTTCGCTCACTGTCATTAGTTAAAGAGGAATT  329

seq1  TCTCTTTCTCAGTCCCAGCCTTGATTCTCAAGGACTAAAATGTGCATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTCAGTCCCAGCCTTGATTCTCAAGGACTAAAATGTGCATCTT  379

seq1  CTCCTCATGGATTAGTTATGGTTGGAGTTGCAGGGACTGTCCACCGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATGGATTAGTTATGGTTGGAGTTGCAGGGACTGTCCACCGAGGA  429

seq1  AATTCTTGTTTGGGCATATTTGAGCAAATTTTTGGACTTATCCGTAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGTTTGGGCATATTTGAGCAAATTTTTGGACTTATCCGTAGCCC  479

seq1  TTTTGTGGAAAATACTTGGAAAATCAAATTTATAAACCTGAGAATCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGAAAATACTTGGAAAATCAAATTTATAAACCTGAGAATCATTG  529

seq1  GAGGAAGTTCCCTTGCTCCTGAATCATTACTGAAGCCATCTGTAACATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTTCCCTTGCTCCTGAATCATTACTGAAGCCATCTGTAACATTT  579

seq1  GAACCAAGTGATCTGGAGGCCTTTTATAACGTAATCACTTTGTGCAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAGTGATCTGGAGGCCTTTTATAACGTAATCACTTTGTGCAATCT  629

seq1  GAAGTAAGACCTAACGTAAGGCAGATAATAGATAGTGGCACTGGAGACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGACCTAACGTAAGGCAGATAATAGATAGTGGCACTGGAGACTA  679

seq1  GGTTTTACATAGTGGAGATGAGGCATTGTTGAACAAAAGGGAAATGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTACATAGTGGAGATGAGGCATTGTTGAACAAAAGGGAAATGAATT  729

seq1  TGCTAAACCCTCTAAAGCATTGAGCACTGTACCTCTGCTTGAAGAAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACCCTCTAAAGCATTGAGCACTGTACCTCTGCTTGAAGAAGCTG  779

seq1  CAGAAACACAACACTGACCATCTATCTCTAAGCCACTGCAGATGTGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACAACACTGACCATCTATCTCTAAGCCACTGCAGATGTGAGAA  829

seq1  TTGACATATTTTAGTTGAAATACCTTTTTTGGACTATAGACTAATGTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATATTTTAGTTGAAATACCTTTTTTGGACTATAGACTAATGTGAA  879

seq1  TACTTGCCTGTTTCTACCTGAGTTACAGCAAATGTTCTGAGAACGTATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCTGTTTCTACCTGAGTTACAGCAAATGTTCTGAGAACGTATTG  929

seq1  TGGTCCACCAAATAAATCCCACTTGAGATATTGTAATAAAAAAAAAAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCACCAAATAAATCCCACTTGAGATATTGTAATAAAAAAAAAAAAG  979

seq1  AAAAAGAAAGTAGACTCAAATTAATAAAATTCGAGGTAATAAAGGGGACG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGTAGACTCAAATTAATAAAATTCGAGGTAATAAAGGGGACG  1029

seq1  TTACTACAGATTCCAGTGAAGTTCAGATGATTGCCATGGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACAGATTCCAGTGAAGTTCAGATGATTGCCATGGAATTC  1073

seq1: chr11_19178110_19179283
seq2: B6Ng01-323O05.g_67_1241

seq1  GAATTCCTTTAACCAACCTCACACTGCAAGAAGGCTCTGCTGGTGTCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAACCAACCTCACACTGCAAGAAGGCTCTGCTGGTGTCCAC  50

seq1  TTGAGAGATGAGTCTACCAGACTGAAGTGAATTAGTTTAAATATATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGATGAGTCTACCAGACTGAAGTGAATTAGTTTAAATATATGCTT  100

seq1  GGACTTAATTGGCTCACTAATAAAAAAAAAACTTTCACTATTCATTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTAATTGGCTCACTAATAAAAAAAAAACTTTCACTATTCATTTAAC  150

seq1  AAATGTTTTTATACTTCTCTTATGGAACAAAGATTACACTAACATCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTTATACTTCTCTTATGGAACAAAGATTACACTAACATCTAAT  200

seq1  ATGAGTGGGGCATGGTTTTGTTTTTACCTTTCCACTTATTTTTTGAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGGGGCATGGTTTTGTTTTTACCTTTCCACTTATTTTTTGAGCAA  250

seq1  TTTTGAAGATTAAAAGTACTATTCCCCAAAAGTTTGGAAGAAATTTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGATTAAAAGTACTATTCCCCAAAAGTTTGGAAGAAATTTCTCT  300

seq1  TAATGTTGCCCATGCCTGAAACAGTTTGTAAATCTATAATTACTATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTGCCCATGCCTGAAACAGTTTGTAAATCTATAATTACTATTTTA  350

seq1  ATTTATTTTGTGGTTACTTTTCTATAGATGGGTTGTTTTTTACCTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTGTGGTTACTTTTCTATAGATGGGTTGTTTTTTACCTCCTTC  400

seq1  AGATTTTGCATTTTATGTTGTTCAGAAACGTCATGATTTTCTACTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGCATTTTATGTTGTTCAGAAACGTCATGATTTTCTACTTTAAA  450

seq1  GCCAAATATTTCATTGCAAATCATGCTTTAGTGATGACTTCCAAACTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATATTTCATTGCAAATCATGCTTTAGTGATGACTTCCAAACTATA  500

seq1  TATTATTTCATTTTTATTTAGTTTAAAATATTTCTTAAAAATGCCTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTCATTTTTATTTAGTTTAAAATATTTCTTAAAAATGCCTATTT  550

seq1  TTTGAGAGACTTTGAAAAAGTATGTGTTTTCTTTTCCAGAAATATGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGACTTTGAAAAAGTATGTGTTTTCTTTTCCAGAAATATGATCA  600

seq1  TTTTAAAAGAATTTTTTTATATTTCTTGTTGAGACTTGGCATTTCGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGAATTTTTTTATATTTCTTGTTGAGACTTGGCATTTCGGCTC  650

seq1  AACAATCCCATTGTTTTGAAGGCTGGGAGAAGAGGTTCAACAGTCCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCCCATTGTTTTGAAGGCTGGGAGAAGAGGTTCAACAGTCCCATT  700

seq1  GGTTTGAAGGCTGGTGGAAGTGGTTCATCGTGAGTTCAAGCCCAATCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAAGGCTGGTGGAAGTGGTTCATCGTGAGTTCAAGCCCAATCTTT  750

seq1  GCTATATAATAAGTTCCAGACCAGCCTAGGCTGGAGAGTGAAGCCCTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATAATAAGTTCCAGACCAGCCTAGGCTGGAGAGTGAAGCCCTACC  800

seq1  CTCAAAAATAAATGAATGAAAAAGTAAATAAATTCATTATTGATTTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAATAAATGAATGAAAAAGTAAATAAATTCATTATTGATTTTAAA  850

seq1  TATATTGGATTATAAACTTAAAAGCTTAAGTCATTATGTCATTAATCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGATTATAAACTTAAAAGCTTAAGTCATTATGTCATTAATCTTT  900

seq1  CATATGTATTGGAGTTGGCATGTGTGCTTTAATATTAGGCTTATTTTTGG  950
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  CATATGTATTGGAGTTGGCATGTGTGCTTTAATAT--AGCTTATTTTTGG  948

seq1  TGTAATTCTGTCCATGGATG-TTTTATGTGATGTTCCAAACAGAATGTAC  999
      |||| |  |||||||||||| |||||||||||||  | |||||| |||||
seq2  TGTATTCTTGTCCATGGATGTTTTTATGTGATGT--CCAACAGATTGTAC  996

seq1  TTCCCCT-ATGCATTTTTCATAAAGGTATTT--AAATAGAGAAAAGCAGA  1046
      |||| || ||||||||||||||| |||||||  |||||||||||||||||
seq2  TTCCTCTAATGCATTTTTCATAATGGTATTTTAAAATAGAGAAAAGCAGA  1046

seq1  GATAAGAA-GTCT--GAGATTATTAATCATG-TCATTCCTGTTTTCT-AC  1091
      |||||||| ||||  ||||||| ||  |||| ||||| ||||||||| ||
seq2  GATAAGAAGGTCTTGGAGATTA-TATCCATGTTCATT-CTGTTTTCTAAC  1094

seq1  ATCTGCATCTTTAATATGCTTG-ATGCTTCTGCATCT-GACAGCGACTTA  1139
      ||| ||||||| |||   |||| ||||||| ||| || ||  ||||||| 
seq2  ATCGGCATCTTAAAT-GCCTTGAATGCTTCGGCAACTGGAACGCGACTT-  1142

seq1  AAGTCTCCAAGCGACTGTGGAGTGTACTCCCTTCT  1174
      |||||||  |||||||| |||   |||||||||||
seq2  AAGTCTC--AGCGACTGGGGAAGTTACTCCCTTCT  1175