BAC Information

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BAC

Clone NameB6Ng01-324M05
Chromosome11 (Build37)
Map Location 30,049,517 - 30,050,636
singlet/doubletsinglet
Overlap geneSpnb2
Upstream genePnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik
Downstream geneEG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324M05.bB6Ng01-324M05.g
ACCGA112995GA112996
length1,098696
definitionB6Ng01-324M05.b B6Ng01-324M05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagctatactaaacgtgtaacatggctcagttttcagctctcact
gctttcctggagaacccaggttctgttgtccaacacccaccccggtggct
cacaactgctggaactcctgttccctcaggagtctgtgggccccttcatg
cacatggtgctcataaacttacacaaaacacacacatacataaataaaat
tgaataaaatacatatttttaaatcctgtaaagtgctgatgaaattattt
cagagtccttggctcttaatgagaatcagttccttgtcaggttaattagt
gtgttactcttaaaactaccttaccttggggctggtgagatgtcacagca
ggttaaggggattcagttcacatctcatggaattgaattaccaagcactt
gtgaagaaatacagctatctattttatttttatttcaagcaacctgatct
taacgggacacatgctcagacaaaattgtcattattgagacatgaccttg
agtttacagtgaacatgaacacaggctttttttctttttttttttttttt
ttttttttagcatttaccaaggcataaacctttatttggtaattgttgtt
ttgcttttgtggtctgtctttgacaggtaccccaatgtcaacattcacaa
tttcaccactagctggagggatggcatggccttcaatgcactgatacata
aacatcggtaagtctgaagaaatcatggtaaaggtagaaagatacagtac
cattttctgtggcagatctggattagttgtggtatctcctgtctgtgggt
tggatattgtaccatagtggaaattccctgcattcatattagggagaatg
tgtgagttcatttattcaaaaaccatgtatcatgttgatgatatataata
ctgtaattttactcactatgctattattttacattctctggagcagtatc
atgctcattagacacttgatttgtttcaaggcatatgtttatgtcactgt
cattcctgtataggctgaactgatagattgataactgaagaatctattgc
caactacatctgcgatgcaattacctggcagacagcactgctcactaa
gaattccaggaagtctttaattttttttctttatgtcttccctgaccaag
ttatcattgattatagagttgttcagtttccatagtatgtgggttttctg
ttatttttgttgttattgaagtcgagccttagttggtgttgatttgatag
gatgcatgggattatttcaatattattttggggaaggtactgtcttagtc
agggtttctattcctgcacaaacatcatgcaagaagcaagttggggagga
agggtttattcggcttacacttccatactgctgttcatcaccaaggaagt
caggactggaactcaagcaggtcagaaagcaggagctgatgcagaggcca
tggaaggatgttcattactggcttgcttcccctggcttgctcagcctgct
ctcttatagaacccaagactgccagcccagagatggtcccacccacaaag
ggcctttcccccatgatcactaattaagaaaataccccacagctggattt
catggaggtacttccccaactgaagctcctttctctgtgataaccccagt
ctgtgtcaagttgacacataaaaccagccagtacaggtactatggggtgc
tgagaagaaggtatattcttttgttttatggtgaaatgtccaatatatat
ctgttaaatctatttgggttcataaacctctattagtttccactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_30049517_30050636
seq2: B6Ng01-324M05.b_48_1145 (reverse)

seq1  TTAGTGAGGCCAAGGTGCTGCTCTGCCAGGTTAAATGCATTCTGCAGATT  50
      ||||||||  ||  |||||| ||||||||| ||| |||||   ||||| |
seq2  TTAGTGAG--CA--GTGCTG-TCTGCCAGG-TAATTGCAT--CGCAGA-T  41

seq1  GTAGTGTGCATTAGATTTCTTCAGTTTATCAAAATCTATCAGGTCAGGCC  100
      |||||  ||| |||| |||||||| |||||  |||||||||| ||| |||
seq2  GTAGTTGGCAATAGA-TTCTTCAG-TTATC--AATCTATCAGTTCA-GCC  86

seq1  TATACA-GAATGACAGTGGAACATAAACATTATGCCTTGGAAACAAATCA  149
      |||||| |||||||||||  ||||||||| |||||||| |||||||||||
seq2  TATACAGGAATGACAGTG--ACATAAACA-TATGCCTT-GAAACAAATCA  132

seq1  AGTGTCTAATGAGGCATGATAACTGCTCCAGAGAATGTTAAAATAATAGC  199
      |||||||||||| ||||||| |||||||||||||||| ||||||||||||
seq2  AGTGTCTAATGA-GCATGAT-ACTGCTCCAGAGAATG-TAAAATAATAGC  179

seq1  ATAGTGGAGTAAAATTACAGTATTATATAATCATCAAACAATGATACATG  249
      ||||| |||||||||||||||||||||| ||||||||   ||||||||||
seq2  ATAGT-GAGTAAAATTACAGTATTATAT-ATCATCAA--CATGATACATG  225

seq1  GTTTTTGAAT-AATGAACTCACACATTCTCCCTAATATGAATGCA-GGAA  297
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  GTTTTTGAATAAATGAACTCACACATTCTCCCTAATATGAATGCAGGGAA  275

seq1  TTTCCACTATGGTACAATATCCAACCCACAGACAGGAGATACCACAACTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTATGGTACAATATCCAACCCACAGACAGGAGATACCACAACTA  325

seq1  ATCCAGATCTGCCACAGAAAATGGTACTGTATCTTTCTACCTTTACCATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATCTGCCACAGAAAATGGTACTGTATCTTTCTACCTTTACCATG  375

seq1  ATTTCTTCAGACTTACCGATGTTTATGTATCAGTGCATTGAAGGCCATGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCAGACTTACCGATGTTTATGTATCAGTGCATTGAAGGCCATGC  425

seq1  CATCCCTCCAGCTAGTGGTGAAATTGTGAATGTTGACATTGGGGTACCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCCAGCTAGTGGTGAAATTGTGAATGTTGACATTGGGGTACCTG  475

seq1  TCAAAGACAGACCACAAAAGCAAAACAACAATTACCAAATAAAGGTTTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACAGACCACAAAAGCAAAACAACAATTACCAAATAAAGGTTTAT  525

seq1  GCCTTGGTAAATGCTAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTAAATGCTAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAGCC  575

seq1  TGTGTTCATGTTCACTGTAAACTCAAGGTCATGTCTCAATAATGACAATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCATGTTCACTGTAAACTCAAGGTCATGTCTCAATAATGACAATT  625

seq1  TTGTCTGAGCATGTGTCCCGTTAAGATCAGGTTGCTTGAAATAAAAATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGAGCATGTGTCCCGTTAAGATCAGGTTGCTTGAAATAAAAATAA  675

seq1  AATAGATAGCTGTATTTCTTCACAAGTGCTTGGTAATTCAATTCCATGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAGCTGTATTTCTTCACAAGTGCTTGGTAATTCAATTCCATGAG  725

seq1  ATGTGAACTGAATCCCCTTAACCTGCTGTGACATCTCACCAGCCCCAAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACTGAATCCCCTTAACCTGCTGTGACATCTCACCAGCCCCAAGG  775

seq1  TAAGGTAGTTTTAAGAGTAACACACTAATTAACCTGACAAGGAACTGATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGTTTTAAGAGTAACACACTAATTAACCTGACAAGGAACTGATT  825

seq1  CTCATTAAGAGCCAAGGACTCTGAAATAATTTCATCAGCACTTTACAGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAGAGCCAAGGACTCTGAAATAATTTCATCAGCACTTTACAGGA  875

seq1  TTTAAAAATATGTATTTTATTCAATTTTATTTATGTATGTGTGTGTTTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATATGTATTTTATTCAATTTTATTTATGTATGTGTGTGTTTTG  925

seq1  TGTAAGTTTATGAGCACCATGTGCATGAAGGGGCCCACAGACTCCTGAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTTATGAGCACCATGTGCATGAAGGGGCCCACAGACTCCTGAGG  975

seq1  GAACAGGAGTTCCAGCAGTTGTGAGCCACCGGGGTGGGTGTTGGACAACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGAGTTCCAGCAGTTGTGAGCCACCGGGGTGGGTGTTGGACAACA  1025

seq1  GAACCTGGGTTCTCCAGGAAAGCAGTGAGAGCTGAAAACTGAGCCATGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGGTTCTCCAGGAAAGCAGTGAGAGCTGAAAACTGAGCCATGTT  1075

seq1  ACACGTTTAGTATAGCTGAATTC  1120
      |||||||||||||||||||||||
seq2  ACACGTTTAGTATAGCTGAATTC  1098