BAC Information

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BAC

Clone NameB6Ng01-325P05
Chromosome11 (Build37)
Map Location 115,960,415 - 115,961,479
singlet/doubletsinglet
Overlap genenone
Upstream geneCd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2
Downstream geneTrim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325P05.bB6Ng01-325P05.g
ACCGA113880GA113881
length1,100939
definitionB6Ng01-325P05.b B6Ng01-325P05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgcccatggcctttcttggaatccccccgaatggccgaaaagg
cccctgtgcccctagctggtacttctctgctgctgatccgggtacataac
atgatacgggctgggaactgtggatccggttccagagctgctagggaact
ggacctgccctgatgaggatctgggaagccccgactccaccaggagagtt
gcactttccctcagctcctcgctccaggcttcttggagactcgaaaactt
tccatgactagaaccttatacatggtttttctccacggacaccttccttc
ctccatctccatcgacaccaacaagccaaggattgtgactgccagataag
gtcagcaagccgtctaccagatgtggatcattccttccttgtaccaagga
ggtgggacagtggacacagagaggagctcttgggctcccacagagggtcc
caaagaaacagccctggtgcgtagactgtgtgaagtgttgccaatttccc
cgtaccatagagggagaagacgtgacccccagaagaacatgcctgaggtt
aaattccttatctttttggtaaaaggtggctttttggtttcctctcctgt
tgctgtgataaagtactctgacagacacaacctaagtgaaaaatggttta
ttctggctctcacttcaagagtacagcccacggggtggcgagatggctca
gtggtttgagagcaggtattgttcttgcaggggactggagttcagttgcc
aggaccgcctcaagcatctcacaacccataaatcaataaagaaaaatctg
taaattaataaagaaaaaagtacataaatcatgaagaaaaacttacagcc
cacgatggcaggaagtcaagggacagcttgacgtcattgtgaccgcacat
tttaaacaggaagcatattgtgaggaaggtacgctagtactcgcctcagc
tgtttgcattattcagctcaggataaagaccaaatggacacgttccccta
tgctgggatgaaccctaggagtttgttgtatactcggcaagccgtctagc
atacctagcccgtcagaatggacgcttatacaagcagatttttaatgaat

gaattcatgtctccaggcttggtggccgtgtccaccactcctgccaccaa
tgaggctgaaccttgatgatttctgtgaggtcccccccgtgtagggctgc
tccctgacaacctgtcttaaatcacattcatgcggtcgggtctgtctgta
accgacggtgacttttgttactctgaatctttcttcatcatcctgatctc
aaggggaagggctgtccgcctactgtcgaggtcgctggcggggcctttgt
gcttcgactgtttttcctactgaacaaggaactgccagcaaatcactcct
cgggaagacaaactctggagtggggctgcttggcaccttttccaaaggtt
ccccgcctcccccttagggccattgtagtgagtgtgggagtgtgtgtctt
actcactggcctcaagggaacattcagctccaatgtggggcagcattttt
ttgtgttaatgtttttagctttcagtaatcacttccttctgtagatttgt
ttaaaaaataaataataatccacctccaacttgtctaggaaagtgatcag
cctgcttagaagttgaggaacaatttcctattgatttctatttcctttaa
catcaaaaagttcctactggggttctaatacttaagaactgaaaaagaat
attaatcactgttttgtaattcacagtattccccacagctgaacacactc
tccacagagtgaggaaggtctgggcagagcatattaagactcgaaatcaa
atctgttttcgcaaaagcaaggacgcatggcctttctgctccgattggtt
tgtcctatgaaaactgcagaactctgacactttagagaaaaatttctcaa
gtacaactccttaaccatggctcagcttagtgtggaacatgagatcctca
aagactcagatttatatctcttccctggaatggcagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115960415_115961479
seq2: B6Ng01-325P05.b_81_1141

seq1  GGCCGAGAAGGCCCCTGTGCCCAGTGCTGGTGCATCTCTGCTGCTGATCC  50
      |||||| |||||||||||||||   |||||| | ||||||||||||||||
seq2  GGCCGAAAAGGCCCCTGTGCCCCTAGCTGGTACTTCTCTGCTGCTGATCC  50

seq1  GGGTACAGCACATG-CAGGGGCTGGGAAAACAGAGTCAGGGTTCCAGAGC  99
      |||||||  |||||  | ||||||||||    |  ||  |||||||||||
seq2  GGGTACATAACATGATACGGGCTGGGAACTGTGGATC-CGGTTCCAGAGC  99

seq1  TGCTAGGGAACTGGACCTGCCCTGGTGAGGATCTGGGAGGCAGCGAGCAG  149
      |||||||||||||||||||||||| ||||||||||||| ||  |||    
seq2  TGCTAGGGAACTGGACCTGCCCTGATGAGGATCTGGGAAGCCCCGACTCC  149

seq1  ACCGGAAGCAGTGCACTTTCCCAGAGCTCCAGCGCTCCAGCAGCCTTGGA  199
      ||| | ||   |||||||||||  ||||||  ||||||||    ||||||
seq2  ACCAGGAGAGTTGCACTTTCCCTCAGCTCC-TCGCTCCAGGCTTCTTGGA  198

seq1  GACAGGAAAACTTTCCAAGAAGAGAACCTTAGACACAGTTCCTCACGAGG  249
      |||  |||||||||||| ||  ||||||||| |||  |||  || | | |
seq2  GACTCGAAAACTTTCCATGACTAGAACCTTATACATGGTTTTTCTCCACG  248

seq1  GAGAGCTCCAGGCAAAGATCAAGATGGAGACCAACAAGCCAAGGATTGTG  299
      || | || |   |    |||   || || |||||||||||||||||||||
seq2  GACACCTTCCTTCCTCCATCTCCATCGACACCAACAAGCCAAGGATTGTG  298

seq1  ACTGCCAGATAAGGTCAGCAAGCCGTCTACCAGATGTGGATCATTCCTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGATAAGGTCAGCAAGCCGTCTACCAGATGTGGATCATTCCTTC  348

seq1  CTTGTACCAGGGAGGTGGGACAGTGGACACAGAGAGGAGCTCTTGGGCTC  399
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACCAAGGAGGTGGGACAGTGGACACAGAGAGGAGCTCTTGGGCTC  398

seq1  CCACAGAGGGTCCCAAAGAAACAGCCCTGGTGCGTAGACTGTGTGAAGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGGGTCCCAAAGAAACAGCCCTGGTGCGTAGACTGTGTGAAGTG  448

seq1  TTGCCAATTTCCCCGTACCATAGAGGGAGAAGACGTGACCCCCAGAAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAATTTCCCCGTACCATAGAGGGAGAAGACGTGACCCCCAGAAGAA  498

seq1  CATGCCTGAGGTTAAATTCCTTATCTTTTTGGTAAAAGGTGGCTTTTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTGAGGTTAAATTCCTTATCTTTTTGGTAAAAGGTGGCTTTTTGG  548

seq1  TTTCCTCTCCTGTTGCTGTGATAAAGTACTCTGACAGACACAACCTAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCCTGTTGCTGTGATAAAGTACTCTGACAGACACAACCTAAGT  598

seq1  GAAAAATGGTTTATTCTGGCTCTCAGTTCAAGAGTACAGCCCACGGGGTG  649
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAAAAATGGTTTATTCTGGCTCTCACTTCAAGAGTACAGCCCACGGGGTG  648

seq1  GCGAGATGGCTCAGTGGTTTGAGAGCAGGTATTGTTCTTGCAGGGGACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGATGGCTCAGTGGTTTGAGAGCAGGTATTGTTCTTGCAGGGGACTG  698

seq1  GAGTTCAGTTGCCAGGACCGCCTCAGGCAGCTCACAACCCATAAATCAAT  749
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  GAGTTCAGTTGCCAGGACCGCCTCAAGCATCTCACAACCCATAAATCAAT  748

seq1  AAAGAAAAATCAATAAATTAATAAAGAAAAAAATTACATAAATCAATAAA  799
      |||||||||||  ||||||||||||| |||||| |||||||||| || ||
seq2  AAAGAAAAATCTGTAAATTAATAAAG-AAAAAAGTACATAAATC-ATGAA  796

seq1  GAAAAAATTACAGCCCACGATGGCAGGAAGTCAAGGGGACAGCTTGAAGG  849
      |||||| ||||||||||||||||||||||||||| ||||||||||| | |
seq2  GAAAAACTTACAGCCCACGATGGCAGGAAGTCAA-GGGACAGCTTG-ACG  844

seq1  TCAAGGTGACAGCACATTTGAAATCAGGAAGCAGAAGGTGAGGAAGGTAG  899
      |||  ||||| |||||||| ||| ||||||||| |  |||||||||||| 
seq2  TCATTGTGACCGCACATTTTAAA-CAGGAAGCATATTGTGAGGAAGGTAC  893

seq1  GCTAGTACTCCGCTCAGCTTCTTTGCTTTATCCAGCTCAGGAAAAAGACC  949
      ||||||||||  |||||| | ||||| |||| |||||||||| |||||||
seq2  GCTAGTACTCGCCTCAGC-TGTTTGCATTATTCAGCTCAGGATAAAGACC  942

seq1  AAAATGGACACTTCCCCCTATGCTGGGATAAACCC-AAGAGTTTG-TGTA  997
       |||||||||| | ||||||||||||||| ||||| | ||||||| ||||
seq2  -AAATGGACACGTTCCCCTATGCTGGGATGAACCCTAGGAGTTTGTTGTA  991

seq1  TACTCGGCAAGCCCTC-AACTTCCCTAGCCC-ACAAAATGGACGCTTTTA  1045
      ||||||||||||| || | | | ||||||||  || ||||||||||| ||
seq2  TACTCGGCAAGCCGTCTAGCATACCTAGCCCGTCAGAATGGACGCTTATA  1041

seq1  AAAGCAGATTTTTATTGAAT  1065
       ||||||||||||| |||||
seq2  CAAGCAGATTTTTAATGAAT  1061