BAC Information

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BAC

Clone NameB6Ng01-326A22
Chromosome11 (Build37)
Map Location 35,062,196 - 35,063,330
singlet/doubletsinglet
Overlap geneSlit3
Upstream geneFoxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976
Downstream geneLOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326A22.bB6Ng01-326A22.g
ACCGA113959GA113960
length1,1321,188
definitionB6Ng01-326A22.b B6Ng01-326A22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgtgccactgtggaggagacaggactcacgcagagcagagctc
agaactgagcccatatgtgatcagagatgctttcatttgccttgggagga
tcctcttttccttttgctttcctccacattctcttcctttgtttcgccta
ttctttaaatgttctcagcctcagacagtcatctcccccttcctcattcc
atggaattagagggggcaatgacagggggttatccacaacagtggcacct
ctcaccgacacatgacaatgaagagggtcccaagagcccacattctgcag
tgcagtgtgggaggtgctgcatgttggtgggtttcttggaaagagaagta
gaagaaatgataggttagcacttccgtttatacagcaccgctgtagagct
tcagagagagttggtttggaaaacattaataatttgatgtcccggagtgg
ttctggttcaattggtttagaagatatggttcatttcagctttggactca
tttgccaaatgtctttcaaaccacctctggtttagatcccagatcaagag
aaaagtaatttggaagtttaagctagtgttcagtaagtgagcatgatcta
gccctttttcctttctttccttcccttttctttcttcttttttttccccc
tttcagaatccagtttggctttagtttgaattcctcttggtccttttttt
aaagctttcactgagctgaggcttccagtaactagacggtccctttcaat
gcccattagaagtcaaaaatcaatgaggccaagggatgaagccaacagtt
tatcttttcatttcattttatcagagaatatcattcccagacctttgaaa
taatcatcaaaaccagcatccctctccttggctctgagagttgggcacgg
ggctcacatctactagatggggagcttaccagactatttctctccgcaga
gagacccactgcccaagtgtgaaatcctgcctgctgtgactttatcctct
ccctgatatgcgtgctgcaagcatgtaagacatgggttccatgtatgggc
gagcaggcagtagcacacaccatatatgcacgcctctaatgagtcatctg
gggtcctccgagcaagagagatcatatttgca
gaattcatcctggcaatttaaagtcagttttaatgatggatattgatata
taattttttccatgtttttgtctggtttagaaacagggtaaatgaattgg
aaagagttctatctttttatattttgtgaaagactttgtacaaattggtg
cttctgccgcgtaaagcatctgtgcgtaaaatctatttgtggggaggttg
ttaaactatgaattcagttcgttagtggatgtaagactaatttagttatt
tacctcctcacaagcaagggtttgtagttcgtgtctttcagagatttctg
ctccatttaagtcaccaaatgttggcataaaacatttcatatttcttcat
tactcttttgatgttagtgagctctatcataatattttattccagatctt
gataattctgtcctctcttgtgactattctagttagagttttacaaactc
tatcttttcaaagaagcaattttatttcattgttgttttttcagttgcag
agatttagtgacctctgttctctattctttcttccctttgtttcttctgg
gcagggtatgttcttttcctgggcttcaaggtagaaggttattgattcca
aaccttccttcttttctaccgtaagcataaagtactcaaatgcttctata
tactcctttagtttcatcgtgcaaattctaaaatgtattttagttttatt
taattagaatattttctaatttcatttgtttcatctttaaatacagttca
tgggtttcatgaaataaaatttgaaagttttgatgcttttctacctatct
ctgtgattttgatttcttagtttaattctgttatatttatgttattcaat
ccttttaaatctattgaaccttgacctatggcttatacggtcttagttct
gtggctgtcccagattgagtgacataataccatgagttctgttgttatta
gatgtcagttgggctttccatggctgttttatggtttttcagtctctcat
ataggttctttatagatgcttcctccagttgggtctgaactgatgagtta
gggatgaccctgatacctcctggttgcccatggatttgttctccttcaat
ttctgtttacatgttctggaaggcctgtctggcatgtacacacttgggga
tgtataaggactttatggagagagaagaggaaactctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_35062196_35063330
seq2: B6Ng01-326A22.b_46_1177 (reverse)

seq1  TGCAAATATGATCTCTTCCTTGCTCTGAAGGGCCCCAGATGACTCATTAA  50
      ||||||||||||||||  ||||||| | ||| ||||||||||||||||| 
seq2  TGCAAATATGATCTCT--CTTGCTC-GGAGGACCCCAGATGACTCATTAG  47

seq1  GAGCGTGCATATAT-GTGTGTGCCTACTGCCTGCTCGCCCATACATGGAA  99
        |||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  AGGCGTGCATATATGGTGTGTG-CTACTGCCTGCTCGCCCATACATGGAA  96

seq1  -CCATGTCTTACATGCTTGCAAGCACGCATATCAGGGAGAGGATAAAGTC  148
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCATGTCTTACATGCTTGC-AGCACGCATATCAGGGAGAGGATAAAGTC  145

seq1  ACAGCAGGCAGGATTTCACACTTGGGCAGTGGGTCTCTCCTGCGGAGAGA  198
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACAGCAGGCAGGATTTCACACTTGGGCAGTGGGTCTCT-CTGCGGAGAGA  194

seq1  AATAGTCTGGTAAGCTCCCCATCTAGTAGATGTGAG-CCCGTGCCCAACT  247
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATAGTCTGGTAAGCTCCCCATCTAGTAGATGTGAGCCCCGTGCCCAACT  244

seq1  CTCAGAGCCAAGGAGAGGGATGCTGGTTTTGATGATTATTTCAAAGGTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCCAAGGAGAGGGATGCTGGTTTTGATGATTATTTCAAAGGTCT  294

seq1  GGGAATGATATTCTCTGATAAAATGAAATGAAAAGATAAACTGTTGGCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGATATTCTCTGATAAAATGAAATGAAAAGATAAACTGTTGGCTT  344

seq1  CATCCCTTGGCCTCATTGATTTTTGACTTCTAATGGGCATTGAAAGGGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTGGCCTCATTGATTTTTGACTTCTAATGGGCATTGAAAGGGAC  394

seq1  CGTCTAGTTACTGGAAGCCTCAGCTCAGTGAAAGCTTTAAAAAAAGGACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTAGTTACTGGAAGCCTCAGCTCAGTGAAAGCTTTAAAAAAAGGACC  444

seq1  AAGAGGAATTCAAACTAAAGCCAAACTGGATTCTGAAAGGGGGAAAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAATTCAAACTAAAGCCAAACTGGATTCTGAAAGGGGGAAAAAAA  494

seq1  AGAAGAAAGAAAAGGGAAGGAAAGAAAGGAAAAAGGGCTAGATCATGCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGAAAAGGGAAGGAAAGAAAGGAAAAAGGGCTAGATCATGCTC  544

seq1  ACTTACTGAACACTAGCTTAAACTTCCAAATTACTTTTCTCTTGATCTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGAACACTAGCTTAAACTTCCAAATTACTTTTCTCTTGATCTGG  594

seq1  GATCTAAACCAGAGGTGGTTTGAAAGACATTTGGCAAATGAGTCCAAAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAACCAGAGGTGGTTTGAAAGACATTTGGCAAATGAGTCCAAAGC  644

seq1  TGAAATGAACCATATCTTCTAAACCAATTGAACCAGAACCACTCCGGGAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGAACCATATCTTCTAAACCAATTGAACCAGAACCACTCCGGGAC  694

seq1  ATCAAATTATTAATGTTTTCCAAACCAACTCTCTCTGAAGCTCTACAGCG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTATTAATGTTTTCCAAACCAACTCTCTCTGAAGCTCTACAGCG  744

seq1  GTGCTGTATAAACGGAAGTGCTAACCTATCATTTCTTCTACTTCTCTTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTATAAACGGAAGTGCTAACCTATCATTTCTTCTACTTCTCTTTC  794

seq1  CAAGAAACCCACCAACATGCAGCACCTCCCACACTGCACTGCAGAATGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACCCACCAACATGCAGCACCTCCCACACTGCACTGCAGAATGTG  844

seq1  GGCTCTTGGGACCCTCTTCATTGTCATGTGTCGGTGAGAGGTGCCACTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGGGACCCTCTTCATTGTCATGTGTCGGTGAGAGGTGCCACTGT  894

seq1  TGTGGATAACCCCCTGTCATTGCCCCCTCTAATTCCATGGAATGAGGAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATAACCCCCTGTCATTGCCCCCTCTAATTCCATGGAATGAGGAAG  944

seq1  GGGGAGATGACTGTCTGAGGCTGAGAACATTTAAAGAATAGGCGAAACAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGATGACTGTCTGAGGCTGAGAACATTTAAAGAATAGGCGAAACAA  994

seq1  AGGAAGAGAATGTGGAGGAAAGCAAAAGGAAAAGAGGATCCTCCCAAGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAATGTGGAGGAAAGCAAAAGGAAAAGAGGATCCTCCCAAGGC  1044

seq1  AAATGAAAGCATCTCTGATCACATATGGGCTCAGTTCTGAGCTCTGCTCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGCATCTCTGATCACATATGGGCTCAGTTCTGAGCTCTGCTCT  1094

seq1  GCGTGAGTCCTGTCTCCTCCACAGTGGCACAGGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||
seq2  GCGTGAGTCCTGTCTCCTCCACAGTGGCACAGGAATTC  1132