BAC Information

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BAC

Clone NameB6Ng01-327C18
Chromosome11 (Build37)
Map Location 73,952,417 - 73,953,401
singlet/doubletsinglet
Overlap genenone
Upstream geneItgae, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401
Downstream geneOlfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327C18.bB6Ng01-327C18.g
ACCGA114789GA114790
length1,1771,088
definitionB6Ng01-327C18.b B6Ng01-327C18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagctcacccttggcctaaaggattttctaggaaccattggaa
cgctggtggaggcttatctatgtcaaaaatcaatccttaaaggcacttat
aataaaacaatactgaaagagagcacagggatccaaacatcagactaacg
caaggacaggttttgagtatagggctatgggaatgccaacgttccaggag
gcaaagtttccttgaatctcttcacctcttgactgctttcaggctcttag
gcctaccaagcagactgcactggagtggacgtagcagactgcagctataa
tggatttatgctgggtgctggttggcaggcctaggactggctgtattcag
ttatgacatgcttctgcaggacttccaggctgctgcaccctaacttgtct
ccatatcagctgccccacatcttgactcaccaggaataactatggagctt
gtaggttgtaggccaaaccacagtgccacattctccatctctcaccagtg
caagcagcataggctgcagcaatagtagatcccctccatccccttctttc
tcctatgagtatataacctgtgtgggaaaaataaaaaattgtcagcttga
tcataagacttctgtctgttgtgtttcttgttcccccattttcttccagg
tagcccctcaagtccctgtttgattgtcctgtgggtcaggacaaactggc
atccagaatgtggggcttccaggggatcattgaggaagagaacaccactc
gtaattggaggataggcctacctgctcatctcagaagcgccatagagcag
ctttggttcggcacaaccctactgtcaacccaaccatgagacagtccagg
agagagaacataagcagcacagatcttaggagaaatacggtaagacatgg
gacaagcattttctaagcagtcattttttgtgacagcgctcaaggagtca
ctctaaacttgaggatctagggtcaaggaaaaggatttgaagaattttta
gattatgtgggagagatttgctcatggttcccccaagaaggaatgactga
tgtaaagagaatggtgcagaggttggtgattgttcagagattatttatga
agcaattggacttacagaaatacctgtatggcctttaaccactgtctctc
ggtagaactttttaaaaacacaccccc
gaattctcacctgaggaataccgaattgcagagaagcacctgaaaaatgt
tcaacatccttaaacatcagagaaatgcaaatcaaaacaacactgagatt
ccacttcactccagtcagaatggctaagatcaaaaactcggtgacagcag
atgctggcgaggatgtggagaaaggggaacactcctccattgttggtggg
attgcaagcttgtacaaccactctggaaatcagtctggcggttcctcaga
aaattggacatagtactactggaggatcccgcaatacctctcctgggcat
atatccagaagatgtcccaaccgataagaagaacacatgctctactatgt
tcatagcagccttatttataatagccagaagctggaaagaacccagatgc
ccctcaacagaggaatggatacagaaaatgtggtagatttacacaatgga
atactactcagctattaaaaaaatgaatttatgaaattcctaggcaaatg
gatggacctgtagggtatcattctcagtgaagtaacccaatcacaaagga
actcgcacaatatgtactcactgataagtggatattagcccagaaactta
ggatacccaagatataagatacaacttgccaaacgcatgaaattcaagaa
aaacaaagaccaaagtgaggacactctaccctttcttagaaatgggaaca
aaacacccatagaaggagttacagagacaaaatttggagctgtgatgaaa
ggatggaccatctagtgatttgccatacgcagggatccatcccataatca
gcttccaaatgctgacaccattgcatacactagcaagattttgctgaaag
gacccagatatagctctctcttgtgagactatggccggggcctagcaaac
acagaagtggatgatcacagtcagctattggatgggttcacaatggcccc
ttatgggaagaagctagaagaaattaacccatggagctaaaagggaaact
gccacctctataggtggaacaacaattggaactaaatctagtacccgggg
aggctctgggcttttagcttgcattatgtatttcaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_73952417_73953401
seq2: B6Ng01-327C18.b_241_1223 (reverse)

seq1  GGGGGTG-GTTTTTAAAAAGTTCTTAACGAGAGACCAGTTGTTAAAGGCC  49
      ||||||| ||||||||||||||| || ||||||| |||| ||||||||||
seq2  GGGGGTGTGTTTTTAAAAAGTTC-TACCGAGAGA-CAGTGGTTAAAGGCC  48

seq1  ATAACAGGTATTTCTGTAGGTCCAAATGCTTCAT-AATAATCTCTGAAAC  98
      || ||||||||||||||| |||||| |||||||| ||||||||||| |||
seq2  AT-ACAGGTATTTCTGTAAGTCCAATTGCTTCATAAATAATCTCTG-AAC  96

seq1  AATCACCAA-CTCTGCACCA-TCTCTTTACATCAGTCATTCCCTCTTGGG  146
      ||||||||| |||||||||| ||||||||||||||||||||| |||||||
seq2  AATCACCAACCTCTGCACCATTCTCTTTACATCAGTCATTCCTTCTTGGG  146

seq1  GGAACCATGAGCAAATCTCTCCCACATAATCTAAAAATTTCTTCAAATCC  196
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGAACCATGAGCAAATCTCTCCCACATAATCTAAAAA-TTCTTCAAATCC  195

seq1  TTTTCCTTGACCCTAGATCCTCAAGTTTAGAGTGACTCCTTGAGCGCTGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGACCCTAGATCCTCAAGTTTAGAGTGACTCCTTGAGCGCTGT  245

seq1  CACAAAAAATGACTGCTTAGAAAATGCTTGTCCCATGTCTTACCGTATTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAATGACTGCTTAGAAAATGCTTGTCCCATGTCTTACCGTATTT  295

seq1  CTCCTAAGATCTGTGCTGCTTATGTTCTCTCTCCTGGACTGTCTCATGGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAGATCTGTGCTGCTTATGTTCTCTCTCCTGGACTGTCTCATGGT  345

seq1  TGGGTTGACAGTAGGGTTGTGCCGAACCAAAGCTGCTCTATGGCGCTTCC  396
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGGTTGACAGTAGGGTTGTGCCGAACCAAAGCTGCTCTATGGCGCTT-C  394

seq1  TGAGATGAGCAGGTAGGCCTATCCTCCAATTACGAGTGGTGTTCTCTTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGAGCAGGTAGGCCTATCCTCCAATTACGAGTGGTGTTCTCTTCC  444

seq1  TCAATGATCCCCTGGAAGCCCCACATTCTGGATGCCAGTTTGTCCTGACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATCCCCTGGAAGCCCCACATTCTGGATGCCAGTTTGTCCTGACC  494

seq1  CACAGGACAATCAAACAGGGACTTGAGGGGCTACCTGGAAGAAAATGGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACAATCAAACAGGGACTTGAGGGGCTACCTGGAAGAAAATGGGG  544

seq1  GAACAAGAAACACAACAGACAGAAGTCTTATGATCAAGCTGACAATTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAAACACAACAGACAGAAGTCTTATGATCAAGCTGACAATTTTT  594

seq1  TATTTTTCCCACACAGGTTATATACTCATAGGAGAAAGAAGGGGATGGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCCACACAGGTTATATACTCATAGGAGAAAGAAGGGGATGGAG  644

seq1  GGGATCTACTATTGCTGCAGCCTATGCTGCTTGCACTGGTGAGAGATGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTACTATTGCTGCAGCCTATGCTGCTTGCACTGGTGAGAGATGGA  694

seq1  GAATGTGGCACTGTGGTTTGGCCTACAACCTACAAGCTCCATAGTTATTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGGCACTGTGGTTTGGCCTACAACCTACAAGCTCCATAGTTATTC  744

seq1  CTGGTGAGTCAAGATGTGGGGCAGCTGATATGGAGACAAGTTAGGGTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGTCAAGATGTGGGGCAGCTGATATGGAGACAAGTTAGGGTGCA  794

seq1  GCAGCCTGGAAGTCCTGCAGAAGCATGTCATAACTGAATACAGCCAGTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGGAAGTCCTGCAGAAGCATGTCATAACTGAATACAGCCAGTCC  844

seq1  TAGGCCTGCCAACCAGCACCCAGCATAAATCCATTATAGCTGCAGTCTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTGCCAACCAGCACCCAGCATAAATCCATTATAGCTGCAGTCTGC  894

seq1  TACGTCCACTCCAGTGCAGTCTGCTTGGTAGGCCTAAGAGCCTGAAAGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTCCACTCCAGTGCAGTCTGCTTGGTAGGCCTAAGAGCCTGAAAGCA  944

seq1  GTCAAGAGGTGAAGAGATTCAAGGAAACTTTGCCTCCTG  985
      |||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGGTGAAGAGATTCAAGGAAACTTTGCCTCCTG  983