BAC Information

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BAC

Clone NameB6Ng01-328A06
Chromosome11 (Build37)
Map Location 26,673,160 - 26,674,392
singlet/doubletsinglet
Overlap genenone
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1
Downstream geneOTTMUSG00000005300, LOC666270, LOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328A06.bB6Ng01-328A06.g
ACCGA115389GA115390
length1,2151,242
definitionB6Ng01-328A06.b B6Ng01-328A06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcacccagagttgatctgtgtaaccaagtaggtactgaaagtag
taggtgttttcttttgtgtatattgaaaccatgctaacaggaggttacta
actgtgtccccatggttttgttacttgcagggagcaacgttttgaatagc
agtcttcagtgttcagatctagttgcataccctatggtcactgatactca
actccagcttttgttgtggagaatgaaaatgactttccctggcctgacaa
gcacacaagaatcctttcatcaccaactactgaggtctgttttccatgtg
cagaaagtaaagctgaagtctgtttacaaatcatgactaagcccctagag
caaagtagcctgtgaaatcaattcatcttgtgaatatgtgaagatggcca
tggctcttttgtattgaaattctgcattagttaggcagtcacatctagac
tgtgacagttggctgaatggaattaaacaatgataaagccctaaacaata
ggagtcagctagactgagtcatccgaagaagctgtgctctggaatacgat
ttaccacaacctcagctgcacatgtgtttctgtggacatggctactatgt
aattagatgagcagtaagttaggtgtttaaaaatattttttcaggtgctt
ttttgtattcatgatagattcctaacaccaaaaaaaatcaatctcaatca
aagcagcaactgagtttatcataaattatcatggaaaggttttctactga
gtagatggttaattactatctaatttgaatatttttgcatattaatgaga
agtggatgaaaatcatttttagattcttaacttcagctgagaaacccatg
gagataatagctcctttacaaaagacatgtgatttctgttactaaaggag
atactgatttgtttttttcccaaaatttactgacttgttttaagtgatga
atggattaatatttgccattaatatattatatccaaatgaaagacactcc
attcctgacactgtagcacctagctgcattccagctagtaaaatggaaaa
acatgaagaatacgctaaggaaaagtatacttgctcagtctttcgagttt
ctagaagcagacgttgtgctccagttattgagtgattctcaatcttgtac
tatggccattgaaattcagttactgttacgaagaaccttggactctggaa
tatggcataccgagc
gaattctcagtgctaatgggaatggaaattagcacagccattacagaata
cagcagagaaggtcctcagaaattaaaaatagactttacataggatccag
taaatctcactgctggatatatatccaatgaatatgaatcaggatatcta
agagacatctgtactcatcattgactgcagtactatttatagtcattgaa
aaaatggaaagaacttaaatgtccatcatttgataaattgataaagacag
catgggacaaatacaatggagtactatttagtcataaaaataaatgacat
tctgtcatttgtaacaaccatgatgtgagagaggataattatgttaagtg
aaataatccaggtgaggaaatcaaagactgaatggtctcatccacatgag
gaatataaaacatttcatctcatcctcatcatagctgatggcagaatgtt
ggtagccatgtggtaaagaaatgaggggagacagatgtgaaactagtgat
aggaacaggttctaatgcagtagtatacagtcagttatattaacagctct
tatcattactatcacaaatcattgataaagccaaaatatgggtagaaatg
tttgatttggcttaaattttaaggtaacacactctccattatgatgggga
aaatatattggtaatagtgtgaggcagttggtcatagtacagccacagtg
aaaagttggaaatatgaatctcaatgctcagctcactttttccgtcatag
tcaacctaggaccccagcctaaaggatgctgctgctcacattcaggagga
gttctgtgccagcagatatactttctggtgatactactatacacagaccc
atagctgtgctagcatggtgagtataagtcaaatccacttgaaaatgaag
agtatcatcataagagtgtaagaagcagcccttccggtctggccagcacc
agggtagctagggagcagagtcggctgacacacccagctacacacagacc
cgccagggatcttaagacctctggcgagtggacacagctgctgctcaatc
caatcgcacgggacctgagaccacattaattaggaagcagaaaaaccagg
ctgatcaggaacaagtccttcctgaaccacaccagtacaggtacctgggc
gtggagtctcacagaacctgtaggttacatgagttccttggatcttaaga
ctcttcgtgtgaattggaatctcacacattctctgtcagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26673160_26674392
seq2: B6Ng01-328A06.b_46_1260

seq1  GAATTCTCACCCAGAGTTGATCTGTGTAACCAAGTAGGTACTGAAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCCAGAGTTGATCTGTGTAACCAAGTAGGTACTGAAAGTAG  50

seq1  TAGGTGTTTTCTTTTGTGTATATTGAAACCATGCTAACAGGAGGTTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTTTCTTTTGTGTATATTGAAACCATGCTAACAGGAGGTTACTA  100

seq1  ACTGTGTCCCCATGGTTTTGTTACTTGCAGGGAGCAACGTTTTGAATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCCCCATGGTTTTGTTACTTGCAGGGAGCAACGTTTTGAATAGC  150

seq1  AGTCTTCAGTGTTCAGATCTAGTTGCATACCCTATGGTCACTGATACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCAGTGTTCAGATCTAGTTGCATACCCTATGGTCACTGATACTCA  200

seq1  ACTCCAGCTTTTGTTGTGGAGAATGAAAATGACTTTCCCTGGCCTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCTTTTGTTGTGGAGAATGAAAATGACTTTCCCTGGCCTGACAA  250

seq1  GCACACAAGAATCCTTTCATCACCAACTACTGAGGTCTGTTTTCCATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAAGAATCCTTTCATCACCAACTACTGAGGTCTGTTTTCCATGTG  300

seq1  CAGAAAGTAAAGCTGAAGTCTGTTTACAAATCATGACTAAGCCCCTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTAAAGCTGAAGTCTGTTTACAAATCATGACTAAGCCCCTAGAG  350

seq1  CAAAGTAGCCTGTGAAATCAATTCATCTTGTGAATATGTGAAGATGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGCCTGTGAAATCAATTCATCTTGTGAATATGTGAAGATGGCCA  400

seq1  TGGCTCTTTTGTATTGAAATTCTGCATTAGTTAGGCAGTCACATCTAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTTTGTATTGAAATTCTGCATTAGTTAGGCAGTCACATCTAGAC  450

seq1  TGTGACAGTTGGCTGAATGGAATTAAACAATGATAAAGCCCTAAACAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGTTGGCTGAATGGAATTAAACAATGATAAAGCCCTAAACAATA  500

seq1  GGAGTCAGCTAGACTGAGTCATCCGAAGAAGCTGTGCTCTGGAATACGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGCTAGACTGAGTCATCCGAAGAAGCTGTGCTCTGGAATACGAT  550

seq1  TTACCACAACCTCAGCTGCACATGTGTTTCTGTGGACATGGCTACTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACAACCTCAGCTGCACATGTGTTTCTGTGGACATGGCTACTATGT  600

seq1  AATTAGATGAGCAGTAAGTTAGGTGTTTAAAAATATTTTTTCAGGTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATGAGCAGTAAGTTAGGTGTTTAAAAATATTTTTTCAGGTGCTT  650

seq1  TTTTGTATTCATGATAGATTCCTAACACCAAAAAAAATCAATCTCAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATTCATGATAGATTCCTAACACCAAAAAAAATCAATCTCAATCA  700

seq1  AAGCAGCAACTGAGTTTATCATAAATTATCATGGAAAGGTTTTCTACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAACTGAGTTTATCATAAATTATCATGGAAAGGTTTTCTACTGA  750

seq1  GTAGATGGTTAATTACTATCTAATTTGAATATTTTTGCATATTAATGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGGTTAATTACTATCTAATTTGAATATTTTTGCATATTAATGAGA  800

seq1  AGTGGATGAAAATCATTTTTAGATTCTTAACTTCAGCTGAGAAACCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATGAAAATCATTTTTAGATTCTTAACTTCAGCTGAGAAACCCATG  850

seq1  GAGATAATAGCTCCTTTACAAAAGACATGTGATTTCTGTTACTAAAGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATAGCTCCTTTACAAAAGACATGTGATTTCTGTTACTAAAGGAG  900

seq1  ATACTGATTTGTTTTTTTCCCAAAATTTACTGACTTGTTTTAAGGTGATG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATACTGATTTGTTTTTTTCCCAAAATTTACTGACTTGTTTTAA-GTGATG  949

seq1  AATGGATTAATATTTTGCCATTAATATATTATATCCAAATGAAAGACAAC  1000
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  AATGGATTAATA-TTTGCCATTAATATATTATATCCAAATGAAAGAC-AC  997

seq1  TCCATTCCTTGACACTGTAGCACCTAGCTGCATTCCAGCTAAGAAAAATG  1050
      |||||||| ||||||||||||||||||||||||||||||| || ||||||
seq2  TCCATTCC-TGACACTGTAGCACCTAGCTGCATTCCAGCT-AGTAAAATG  1045

seq1  GAAAAAAGATGAAGAATACGCTAAGGAAAAGTATAACCTTGCTCAGTCCT  1100
      | ||||| |||||||||||||||||||||||||||  ||||||||||| |
seq2  G-AAAAACATGAAGAATACGCTAAGGAAAAGTATA--CTTGCTCAGTCTT  1092

seq1  TCAGAGTTTCTAGAAGCAGACGTTTGTGCTTCCAGTTA-TGAGTGTATTT  1149
      || ||||||||||||||||||| |||||| |||||||| |||||| ||| 
seq2  TC-GAGTTTCTAGAAGCAGACG-TTGTGC-TCCAGTTATTGAGTG-ATTC  1138

seq1  TTATATCTTGTACTTTTTGCCATATGAAATTCTATGTATATTTGTTTACA  1199
      | | ||||||||| | | ||||| ||||||||  |   ||  ||||   |
seq2  TCA-ATCTTGTAC-TATGGCCAT-TGAAATTCAGT---TA-CTGTTACGA  1181

seq1  AGAGACGTTTAGATCTAGAATAT-GCATACCGAGC  1233
      ||| || ||    ||| |||||| |||||||||||
seq2  AGA-ACCTTGGACTCTGGAATATGGCATACCGAGC  1215