BAC Information

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BAC

Clone NameB6Ng01-328C16
Chromosome11 (Build37)
Map Location 13,796,875 - 13,926,463
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328C16.bB6Ng01-328C16.g
ACCGA115503GA115504
length1,2141,197
definitionB6Ng01-328C16.b B6Ng01-328C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,796,875 - 13,798,115)(13,925,269 - 13,926,463)
sequence
gaattccaggacagccagggctagctacacagagaaaccctgtgtcaaaa
aagaaagaaaggaagaaagaaaggaaggaaggaaggaaggaaggaaggaa
ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagcctgtctgtgaatgtttgtgtgtgtgtatgtgtgtgc
acacatgcatctgtggatataatagaataaattcttttcatacatgtatt
aagtttctccaaaagcatcagcatcgctacaactgagtggattctgtttc
tttttatggctgaattgtagttcttcttgataatcaatccattgtacttt
tggacacctttgaaaacttagttgcttatattttctcttcctcttagatt
tttcattattttgttgttaagaaagacagctatagatgaaataaacgtag
aaggcaactacttctttaatatgagaaacaccttccccatcaatggtata
gaaattttcagtaactttcaccatgttacatgagtatcagtggctaacag
tataatgctatcataagatataaacaacaaaatcaaatagcaataggtac
atctgaacagtaatactcaagaaaaacaaaagatcatttaatcaatagtc
ttgggcagcaaatatcctaataaacagagcagactagtccttagttttga
tttctataagtcccttccctaaaaatggcaccattttttagatgtgaaga
ataagatgtgtatagataagcttacagaatttagtaaaaatccttaattt
gtattcttttttgtaatgaacgacatgtttactttgattcatgggtttgg
ggtacagtccatcatgatgggaaagtcatgggtcatggagggaacacaca
gcatctcgctgcagaggcatggagctatgagctgctgttcagcttgcatt
ctcttttctcttcagtctagaaccccacccatagatgatgccacccatgg
gtaagcagttcttgtcaccccaaataactcatctagctatcctctggcat
accagagcttagtactcccttatagtgtgctagagctactctaatgtttc
tagtagcattttctcaggtgatcaggaccttggggtcactatcgatatca
tggcatatcgatat

gaattcaatattatgatctacataaataatagaatacttagtcatagaaa
atgaagatttaaaacactctcctaattgttcaatcacactgcatactgac
caactatatatgaaaatgcattgtatttaagagaacttgggatgcccaaa
attctattaagatgaggtaccatatcaatagaataaagaatataattgca
tgattattccatagaatttacaatatttataaaactctgaagcctgttta
tactcattcactcaatcaactttgcctagaaggaaggaatcaaacacttt
cagtgaagactgaactaaagaatgtaatcatgaaattggttccatagcaa
agatctcattctttctattgagaatgaatgtttcagaaaaacctaatcaa
tataatccaacaagaaaaatgagtaagttgcatataatttctcaagaaat
ggaaaaggctatttcttcacagacataacccttattgtaatgtaagtaat
ctaaagaaattattgaaactaacaaacttgatgaggtagattttctatag
tagatcagtataaaaatattaactataatttgatttattaaacatgatca
ataagaaaaaaaattaagggcacagtccccttttaattcatcagaaagag
taaaatagtaatatataattttacaagaagtgcaaatgttccatgatgaa
aactgttattgtaatctaaaaggaattaaagaaattaagtaaatcttaaa
ttgtgatttttaataatttcacattgttaatgaataatttctgtttgact
ctgtgaaattaaataggcaacaggatattagatattaaattttagcacaa
acttaaaatattcaaatatatatgtgataatttgacatagccagggaaac
ttgatttttctttaagaaattactaaagtaaagcactgtagcattcccct
ctgctcttatgcaaatggttttcaaaatgtgcattgcacattagtaactg
acttgtttctttgcaggagtgaatttaatttatatgttgtatcataatac
tctgtagttaacatgctatcacgtggatcctagatttatttttatacaat
gaaaaccatggcacaggaaaacaaattattgcatgattgtattttgtacc
aggtatgtgatcatataaactcgaaatcctaaaaatttcagaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_13796875_13798115
seq2: B6Ng01-328C16.b_50_1263

seq1  GAATTCCAGGACAGCCAGGGCTAGCTACACAGAGAAACCCTGTGTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTAGCTACACAGAGAAACCCTGTGTCAAAA  50

seq1  AAGAAAGAAAGGAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGGAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  100

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGAAAGA  150

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  200

seq1  GAAAGAAAGAAAGCCTGTCTGTGAATGTTTGTGTGTGTGTATGTGTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGCCTGTCTGTGAATGTTTGTGTGTGTGTATGTGTGTGC  250

seq1  ACACATGCATCTGTGGATATAATAGAATAAATTCTTTTCATACATGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCATCTGTGGATATAATAGAATAAATTCTTTTCATACATGTATT  300

seq1  AAGTTTCTCCAAAAGCATCAGCATCGCTACAACTGAGTGGATTCTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTCCAAAAGCATCAGCATCGCTACAACTGAGTGGATTCTGTTTC  350

seq1  TTTTTATGGCTGAATTGTAGTTCTTCTTGATAATCAATCCATTGTACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGGCTGAATTGTAGTTCTTCTTGATAATCAATCCATTGTACTTT  400

seq1  TGGACACCTTTGAAAACTTAGTTGCTTATATTTTCTCTTCCTCTTAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACCTTTGAAAACTTAGTTGCTTATATTTTCTCTTCCTCTTAGATT  450

seq1  TTTCATTATTTTGTTGTTAAGAAAGACAGCTATAGATGAAATAAACGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTATTTTGTTGTTAAGAAAGACAGCTATAGATGAAATAAACGTAG  500

seq1  AAGGCAACTACTTCTTTAATATGAGAAACACCTTCCCCATCAATGGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACTACTTCTTTAATATGAGAAACACCTTCCCCATCAATGGTATA  550

seq1  GAAATTTTCAGTAACTTTCACCATGTTACATGAGTATCAGTGGCTAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTCAGTAACTTTCACCATGTTACATGAGTATCAGTGGCTAACAG  600

seq1  TATAATGCTATCATAAGATATAAACAACAAAATCAAATAGCAATAGGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGCTATCATAAGATATAAACAACAAAATCAAATAGCAATAGGTAC  650

seq1  ATCTGAACAGTAATACTCAAGAAAAACAAAAGATCATTTAATCAATAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACAGTAATACTCAAGAAAAACAAAAGATCATTTAATCAATAGTC  700

seq1  TTGGGCAGCAAATATCCTAATAAACAGAGCAGACTAGTCCTTAGTTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCAGCAAATATCCTAATAAACAGAGCAGACTAGTCCTTAGTTTTGA  750

seq1  TTTCTATAAGTCCCTTCCCTAAAAATGGCACCATTTTTTAGATGTGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAAGTCCCTTCCCTAAAAATGGCACCATTTTTTAGATGTGAAGA  800

seq1  ATAAGATGTGTATAGATAAGCTTACAGAATTTAGTAAAAATCCTTAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGTGTATAGATAAGCTTACAGAATTTAGTAAAAATCCTTAATTT  850

seq1  GTATTCTTTTTTGTAATGAACGACATGTTTACTTTGATTCATGGTTTTGG  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTATTCTTTTTTGTAATGAACGACATGTTTACTTTGATTCATGGGTTTGG  900

seq1  GGTACAGTCCATCATGATGGGAAAGTCATGGGTCATGGAGGGAACACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGTCCATCATGATGGGAAAGTCATGGGTCATGGAGGGAACACACA  950

seq1  GCATCTCGCTGCAGGAGGCATGGAGCTATGAGGCTGCTGTTCAGCTTGCA  1000
      ||||||||||||| ||||||||||||||||| ||||||||||||||||||
seq2  GCATCTCGCTGCA-GAGGCATGGAGCTATGA-GCTGCTGTTCAGCTTGCA  998

seq1  TTCTCTTTTCTCTTCAGTCTAGAACCCCACCCCATAGAATGATGCCACCC  1050
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  TTCTCTTTTCTCTTCAGTCTAGAACCCCA-CCCATAG-ATGATGCCACCC  1046

seq1  ATGGGTAAGGCAGTTCTTGTCACCCCAAATAACCTCATCTAGCTAATCCC  1100
      |||||||| ||||||||||||||||||||||| ||||||||||||  | |
seq2  ATGGGTAA-GCAGTTCTTGTCACCCCAAATAA-CTCATCTAGCTATCCTC  1094

seq1  TCCTGGGCATACCCAGAAGCTAAGTACTCCCCTTATAGGTGTGCCTAGAG  1150
      |    |||||| |||| |||| |||||| |||||||| ||||| ||||||
seq2  T----GGCATA-CCAG-AGCTTAGTACT-CCCTTATA-GTGTG-CTAGAG  1135

seq1  GCCTAACTCCTAGATGTTTCTAGTGTAGCA-TTTCTCAGGTGGATCAGGA  1199
        || ||| ||| |||||||||  |||||| |||||||||| ||||||||
seq2  --CT-ACT-CTA-ATGTTTCTA--GTAGCATTTTCTCAGGT-GATCAGGA  1177

seq1  CCCCTTGGGGGTCACTTATCAGATATCAT-GCATATCAGATAT  1241
      ||   | |||||||| |||| |||||||| ||||||| |||||
seq2  CC---TTGGGGTCAC-TATC-GATATCATGGCATATC-GATAT  1214


seq1: chr11_13925269_13926463
seq2: B6Ng01-328C16.g_67_1263 (reverse)

seq1  TTTA-TCTGATATTTTTA-GATTT-GAGTTTATATGATCTACATACTTGG  47
      |||| ||||| ||||||| ||||| |||||||||||||| |||||| |||
seq2  TTTATTCTGAAATTTTTAGGATTTCGAGTTTATATGATC-ACATACCTGG  49

seq1  TAC-AAATACAATCATGCAAT-ATATGTTTTCTTGTGGCATGGTTTTCAT  95
      ||| ||||||||||||||||| || ||||||| |||| ||||||||||||
seq2  TACAAAATACAATCATGCAATAATTTGTTTTCCTGTGCCATGGTTTTCAT  99

seq1  TGTAT-AAAATAAATCTTAGGGATCCACGTGATAGCATGTTAACTACAGA  144
      ||||| |||||||||||   ||||||||||||||||||||||||||||||
seq2  TGTATAAAAATAAATCT--AGGATCCACGTGATAGCATGTTAACTACAGA  147

seq1  GTA-TATGATAACAACATATAAATTAAATTCACTCCTTGCAAGGAACAAG  193
      ||| |||||| ||||||||||||||||||||||||||   ||| ||||||
seq2  GTATTATGAT-ACAACATATAAATTAAATTCACTCCTGCAAAGAAACAAG  196

seq1  TCAGTTTACTAATGTGCAATGCACATTTTGAAAACCATTTGCATAAGAGC  243
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAG-TTACTAATGTGCAATGCACATTTTGAAAACCATTTGCATAAGAGC  245

seq1  AGAGGGGAATGCTACAGTGCTTTACTTTAGTAATTTCTTAAAGAAAAATC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGAATGCTACAGTGCTTTACTTTAGTAATTTCTTAAAGAAAAATC  295

seq1  AAGTTTCCCTGGCTATGTCAAATTATCACATATATATTTGAATATTTTAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCCTGGCTATGTCAAATTATCACATATATATTTGAATATTTTAA  345

seq1  GTTTGTGCTAAAATTTAATATCTAATATCCTGTTGCCTATTTAATTTCAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGCTAAAATTTAATATCTAATATCCTGTTGCCTATTTAATTTCAC  395

seq1  AGAGTCAAACAGAAATTATTCATTAACAATGTGAAATTATTAAAAATCAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAAACAGAAATTATTCATTAACAATGTGAAATTATTAAAAATCAC  445

seq1  AATTTAAGATTTACTTAATTTCTTTAATTCCTTTTAGATTACAATAACAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGATTTACTTAATTTCTTTAATTCCTTTTAGATTACAATAACAG  495

seq1  TTTTCATCATGGAACATTTGCACTTCTTGTAAAATTATATATTACTATTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATCATGGAACATTTGCACTTCTTGTAAAATTATATATTACTATTT  545

seq1  TACTCTTTCTGATGAATTAAAAGGGGACTGTGCCCTTAATTTTTTTTCTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTCTGATGAATTAAAAGGGGACTGTGCCCTTAATTTTTTTTCTT  595

seq1  ATTGATCATGTTTAATAAATCAAATTATAGTTAATATTTTTATACTGATC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCATGTTTAATAAATCAAATTATAGTTAATATTTTTATACTGATC  645

seq1  TACTATAGAAAATCTACCTCATCAAGTTTGTTAGTTTCAATAATTTCTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAGAAAATCTACCTCATCAAGTTTGTTAGTTTCAATAATTTCTTT  695

seq1  AGATTACTTACATTACAATAAGGGTTATGTCTGTGAAGAAATAGCCTTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACTTACATTACAATAAGGGTTATGTCTGTGAAGAAATAGCCTTTT  745

seq1  CCATTTCTTGAGAAATTATATGCAACTTACTCATTTTTCTTGTTGGATTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTGAGAAATTATATGCAACTTACTCATTTTTCTTGTTGGATTA  795

seq1  TATTGATTAGGTTTTTCTGAAACATTCATTCTCAATAGAAAGAATGAGAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTAGGTTTTTCTGAAACATTCATTCTCAATAGAAAGAATGAGAT  845

seq1  CTTTGCTATGGAACCAATTTCATGATTACATTCTTTAGTTCAGTCTTCAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTATGGAACCAATTTCATGATTACATTCTTTAGTTCAGTCTTCAC  895

seq1  TGAAAGTGTTTGATTCCTTCCTTCTAGGCAAAGTTGATTGAGTGAATGAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGTTTGATTCCTTCCTTCTAGGCAAAGTTGATTGAGTGAATGAG  945

seq1  TATAAACAGGCTTCAGAGTTTTATAAATATTGTAAATTCTATGGAATAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAGGCTTCAGAGTTTTATAAATATTGTAAATTCTATGGAATAAT  995

seq1  CATGCAATTATATTCTTTATTCTATTGATATGGTACCTCATCTTAATAGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATTATATTCTTTATTCTATTGATATGGTACCTCATCTTAATAGA  1045

seq1  ATTTTGGGCATCCCAAGTTCTCTTAAATACAATGCATTTTCATATATAGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGGCATCCCAAGTTCTCTTAAATACAATGCATTTTCATATATAGT  1095

seq1  TGGTCAGTATGCAGTGTGATTGAACAATTAGGAGAGTGTTTTAAATCTTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTATGCAGTGTGATTGAACAATTAGGAGAGTGTTTTAAATCTTC  1145

seq1  ATTTTCTATGACTAAGTATTCTATTATTTATGTAGATCATAATATTGAAT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTATGACTAAGTATTCTATTATTTATGTAGATCATAATATTGAAT  1195

seq1  TC  1195
      ||
seq2  TC  1197


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