BAC Information

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BAC

Clone NameB6Ng01-328G09
Chromosome11 (Build37)
Map Location 36,442,197 - 36,553,994
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneSlit3, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328G09.bB6Ng01-328G09.g
ACCGA115674GA115675
length1,2551,163
definitionB6Ng01-328G09.b B6Ng01-328G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,552,732 - 36,553,994)(36,442,197 - 36,443,361)
sequence
gaattctctgagccagcagcaacggaaaggtaaatagaagaatgagagaa
aagttgttttggctcctgtccacaagaaacagtgttcctttaaaatctgg
tagataatgtcattggcaaagtgcatctaagcatgaaacttaaacatagc
tagatttgcagactacttgcacacaagcagatctggaacagcaatgacat
ttgcttctagcgtcctcagagtatacattgctggtagaatgacctgggat
cattgcagcataaggaatgcaaaactaaatatttgtatcagaaaaatgga
taggttttatatagtactaattattcaaagatcttatatgatttttaaat
caagaggcataacttaggacacattttgtagagacactatgtattcgtat
tactatttattttcagaagtgtgtatcttgctttgactgatcatgccttc
atacaagcagttctttatggaatcatcttattggctctggagacaaagta
ttataccatgcagataccaaaaaggaagatttcagagtcttgctctggat
aaagaattagaaaaagatagataagtcagtcataggccaatatttggtct
attctacaagtacttgggacaaataaaaataagtaaatttccatttttat
taattacattcatttggccaaagggaattttattcatttgaaaatgttgc
tcatttgatgaactgtttagtaattttttgttgtaaaatagctacagtag
tagccttgagacacatttttctccagaattgtatattgataatgattgaa
ttgcaatgccaagagtgtcccaaaaatatctgtgtccttacattcttggt
acaaataaaactctctctatagggagtacctctgatctttcagcagttaa
ggacactagtttgttttctaggggccttggttccactcttagtacccata
tgacagttcacaacaatctgtaactccagtttcagaggatcctatgccct
tccctagcacccatgggcactagacatattttgtgggtgacaatgcagcc
aaaatacccatacacataaattttttaaaaaagtgggtgccagaaaagag
gattaataataatgatgtgatccagaatttctgcagaaaaacactaatct
gataaaagacaaaacattcccaggtgaattgtgcttgggaagaatgctga
acatatcttactccgatgcatttataggaaggcgaggcatggacccagga
accat

gaattctcaggtttgccagtgtacttaacttttaacgtttttaaattttc
taaattatgtgtatgtaggagggattagtacacatgagcataggtgccca
cggtggccagagacttgtagccctcatggagttggaatctggaagccatg
ttgttttcagtagtattttgggtagatagaactggggtcctatgcaagaa
ctgtagatgctctaaatcactgagaaatctttcagcaccccttttttttc
actttttgataatgccaaataaatgaaataaaaaaatagaaacataataa
atgcccatttatttcacgggtttttctactattaatacagataaattgtt
aagtattaaaaacaaaaaaatgttttataatctgttaagatctagtctag
cactcttgcagaggacctggttttccttcacagcacaaagcccataaacc
cttttccagggcatctgatgtccttgcctggcctgcatagctacctgcac
ataaattatgcatacacatacaaacaggcacacacaaacacatgcaaaaa
tgaaaataaatgcaactatttttattattacctttgagttttttacagtt
caatcattgcccccccccaccctccagtgtaccctcccatagttcatcat
cccattcctcctctctcttgtctccaagacgatgccccacccaccctgct
cctgccaggcctcaagtctctctagggttaggtgtatcttcttccagtgt
agccagaccaggaagtcctctgctgtatatgtgtagggggcctcagacca
gctcatgtatgctgcctggttggtggcttagtgtctgagagctctcaggg
gtctgggtgagttgggactgctagtcttcttatggggttgccctcttcct
cagcttctttcagtcttttcaaccacagtggtccccaacttcagtccaat
ggctagggttggacctgcccaacttgggattcatcttaaggggaggctcc
aagaacctgacactattactgatgctatggtggtgcttacagaacaggaa
catgctgtcttattgagagaactcattaacactttcaaaagactctagtt
attagatctagctataaaaacttggatcaccctatgtcacgtgtagcagg
cattatcaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_36552732_36553994
seq2: B6Ng01-328G09.b_46_1300 (reverse)

seq1  ATGGTTCCTGTGGTCAATGCCTCGCTCTCCTAATAAAATGCATTCCTGAA  50
      |||||||||| |||| |||||||||  |||||   ||||||||  | || 
seq2  ATGGTTCCTG-GGTCCATGCCTCGCCTTCCTA--TAAATGCAT--CGGA-  44

seq1  AGGTAAG-TATGTTTCAGCATCCTTTCCCAAGCAACCAAATCCACTTGGA  99
        ||||| |||| |||||||| | ||||||||||    ||| ||| ||| 
seq2  --GTAAGATATG-TTCAGCATTC-TTCCCAAGCA---CAATTCACCTGGG  87

seq1  AATG-TTTGTCTTTATTCAGTATTTAGTG-TTTTCTGCAGAAA-TCTGGA  146
      |||| |||||||||  ||||   |||||| ||||||||||||| ||||||
seq2  AATGTTTTGTCTTTTATCAG--ATTAGTGTTTTTCTGCAGAAATTCTGGA  135

seq1  TCACAATCAATTATTA-TAAT-CTC-TTTCTGGCA-CCACTTTTTTAAAA  192
      |||| ||| ||||||| |||| ||| ||||||||| ||||||||||||||
seq2  TCAC-ATC-ATTATTATTAATCCTCTTTTCTGGCACCCACTTTTTTAAAA  183

seq1  AATTTAATGTGTATGGGTATTTTGGCTGCA-TGTCA-CCAC-ATATATGT  239
      ||||| |||||||||||||||||||||||| ||||| |||| | ||||||
seq2  AATTT-ATGTGTATGGGTATTTTGGCTGCATTGTCACCCACAAAATATGT  232

seq1  CTAGTGCCCATGGGTGCTAGGGAAGGGCATAGGATCCTCTGAAACTGGAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCCCATGGGTGCTAGGGAAGGGCATAGGATCCTCTGAAACTGGAG  282

seq1  TTACAGATTGTTGTGAACTGTCATATGGGTACTAAGAGTGGAACCAAGGC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTACAGATTGTTGTGAACTGTCATATGGGTACTAAGAGTGGAACCAAGG-  331

seq1  CCCCTAGAAAACAAACTAGTGTCCTTAACTGCTGAAAGATCAGAGGTACT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGAAAACAAACTAGTGTCCTTAACTGCTGAAAGATCAGAGGTACT  381

seq1  CCCTATAGAGAGAGTTTTATTTGTACCAAGAATGTAAGGACACAGATATT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAGAGAGAGTTTTATTTGTACCAAGAATGTAAGGACACAGATATT  431

seq1  TTTGGGACACTCTTGGCATTGCAATTCAATCATTATCAATATACAATTCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGACACTCTTGGCATTGCAATTCAATCATTATCAATATACAATTCT  481

seq1  GGAGAAAAATGTGTCTCAAGGCTACTACTGTAGCTATTTTACAACAAAAA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAATGTGTCTCAAGGCTACTACTGTAGCTATTTTACAACAAAAA  531

seq1  ATTACTAAACAGTTCATCAAATGAGCAACATTTTCAAATGAATAAAATTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAAACAGTTCATCAAATGAGCAACATTTTCAAATGAATAAAATTC  581

seq1  CCTTTGGCCAAATGAATGTAATTAATAAAAATGGAAATTTACTTATTTTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCCAAATGAATGTAATTAATAAAAATGGAAATTTACTTATTTTT  631

seq1  ATTTGTCCCAAGTACTTGTAGAATAGACCAAATATTGGCCTATGACTGAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCCAAGTACTTGTAGAATAGACCAAATATTGGCCTATGACTGAC  681

seq1  TTATCTATCTTTTTCTAATTCTTTATCCAGAGCAAGACTCTGAAATCTTC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATCTTTTTCTAATTCTTTATCCAGAGCAAGACTCTGAAATCTTC  731

seq1  CTTTTTGGTATCTGCATGGTATAATACTTTGTCTCCAGAGCCAATAAGAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGTATCTGCATGGTATAATACTTTGTCTCCAGAGCCAATAAGAT  781

seq1  GATTCCATAAAGAACTGCTTGTATGAAGGCATGATCAGTCAAAGCAAGAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCATAAAGAACTGCTTGTATGAAGGCATGATCAGTCAAAGCAAGAT  831

seq1  ACACACTTCTGAAAATAAATAGTAATACGAATACATAGTGTCTCTACAAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTCTGAAAATAAATAGTAATACGAATACATAGTGTCTCTACAAA  881

seq1  ATGTGTCCTAAGTTATGCCTCTTGATTTAAAAATCATATAAGATCTTTGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCTAAGTTATGCCTCTTGATTTAAAAATCATATAAGATCTTTGA  931

seq1  ATAATTAGTACTATATAAAACCTATCCATTTTTCTGATACAAATATTTAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGTACTATATAAAACCTATCCATTTTTCTGATACAAATATTTAG  981

seq1  TTTTGCATTCCTTATGCTGCAATGATCCCAGGTCATTCTACCAGCAATGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATTCCTTATGCTGCAATGATCCCAGGTCATTCTACCAGCAATGT  1031

seq1  ATACTCTGAGGACGCTAGAAGCAAATGTCATTGCTGTTCCAGATCTGCTT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTGAGGACGCTAGAAGCAAATGTCATTGCTGTTCCAGATCTGCTT  1081

seq1  GTGTGCAAGTAGTCTGCAAATCTAGCTATGTTTAAGTTTCATGCTTAGAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAAGTAGTCTGCAAATCTAGCTATGTTTAAGTTTCATGCTTAGAT  1131

seq1  GCACTTTGCCAATGACATTATCTACCAGATTTTAAAGGAACACTGTTTCT  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTGCCAATGACATTATCTACCAGATTTTAAAGGAACACTGTTTCT  1181

seq1  TGTGGACAGGAGCCAAAACAACTTTTCTCTCATTCTTCTATTTACCTTTC  1239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACAGGAGCCAAAACAACTTTTCTCTCATTCTTCTATTTACCTTTC  1231

seq1  CGTTGCTGCTGGCTCAGAGAATTC  1263
      ||||||||||||||||||||||||
seq2  CGTTGCTGCTGGCTCAGAGAATTC  1255


seq1: chr11_36442197_36443361
seq2: B6Ng01-328G09.g_68_1230

seq1  GAATTCTCAGGTTTGCCAGTGTACTTAACTTTTAACGTTTTTAAATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTTTGCCAGTGTACTTAACTTTTAACGTTTTTAAATTTTC  50

seq1  TAAATTATGTGTATGTAGGAGGGATTAGTACACATGAGCATAGGTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATGTGTATGTAGGAGGGATTAGTACACATGAGCATAGGTGCCCA  100

seq1  CGGTGGCCAGAGACTTGTAGCCCTCATGGAGTTGGAATCTGGAAGCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGCCAGAGACTTGTAGCCCTCATGGAGTTGGAATCTGGAAGCCATG  150

seq1  TTGTTTTCAGTAGTATTTTGGGTAGATAGAACTGGGGTCCTATGCAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCAGTAGTATTTTGGGTAGATAGAACTGGGGTCCTATGCAAGAA  200

seq1  CTGTAGATGCTCTAAATCACTGAGAAATCTTTCAGCACCCCTTTTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGATGCTCTAAATCACTGAGAAATCTTTCAGCACCCCTTTTTTTTC  250

seq1  ACTTTTTGATAATGCCAAATAAATGAAATAAAAAAATAGAAACATAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGATAATGCCAAATAAATGAAATAAAAAAATAGAAACATAATAA  300

seq1  ATGCCCATTTATTTCACGGGTTTTTCTACTATTAATACAGATAAATTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCATTTATTTCACGGGTTTTTCTACTATTAATACAGATAAATTGTT  350

seq1  AAGTATTAAAAACAAAAAAATGTTTTATAATCTGTTAAGATCTAGTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTAAAAACAAAAAAATGTTTTATAATCTGTTAAGATCTAGTCTAG  400

seq1  CACTCTTGCAGAGGACCTGGTTTTCCTTCACAGCACAAAGCCCATAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGCAGAGGACCTGGTTTTCCTTCACAGCACAAAGCCCATAAACC  450

seq1  CTTTTCCAGGGCATCTGATGTCCTTGCCTGGCCTGCATAGCTACCTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAGGGCATCTGATGTCCTTGCCTGGCCTGCATAGCTACCTGCAC  500

seq1  ATAAATTATGCATACACATACAAACAGGCACACACAAACACATGCAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTATGCATACACATACAAACAGGCACACACAAACACATGCAAAAA  550

seq1  TGAAAATAAATGCAACTATTTTTATTATTACCTTTGAGTTTTTTACAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAAATGCAACTATTTTTATTATTACCTTTGAGTTTTTTACAGTT  600

seq1  CAATCATTGCCCCCCCCCACCCTCCAGTGTACCCTCCCATAGTTCATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATTGCCCCCCCCCACCCTCCAGTGTACCCTCCCATAGTTCATCAT  650

seq1  CCCATTCCTCCTCTCTCTTGTCTCCAAGACGATGCCCCACCCACCCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCTCCTCTCTCTTGTCTCCAAGACGATGCCCCACCCACCCTGCT  700

seq1  CCTGCCAGGCCTCAAGTCTCTCTAGGGTTAGGTGTATCTTCTTCCAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAGGCCTCAAGTCTCTCTAGGGTTAGGTGTATCTTCTTCCAGTGT  750

seq1  AGCCAGACCAGGAAGTCCTCTGCTGTATATGTGTAGGGGGCCTCAGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGACCAGGAAGTCCTCTGCTGTATATGTGTAGGGGGCCTCAGACCA  800

seq1  GCTCATGTATGCTGCCTGGTTGGTGGCTTAGTGTCTGAGAGCTCTCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTATGCTGCCTGGTTGGTGGCTTAGTGTCTGAGAGCTCTCAGGG  850

seq1  GTCTGGGTGAGTTGGGACTGCTAGTCTTCTTATGGGGTTGCCCTCTTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGTGAGTTGGGACTGCTAGTCTTCTTATGGGGTTGCCCTCTTCCT  900

seq1  CAGCTTCTTTCAGTCTTTTCAACCACAGTGGTCCCCAACTTCAGTCCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTTCAGTCTTTTCAACCACAGTGGTCCCCAACTTCAGTCCAAT  950

seq1  GGCTA-GGTTGGACCTGCCCAACTTGGGATTCATCTTAAGGGGAGGCTCC  999
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGGTTGGACCTGCCCAACTTGGGATTCATCTTAAGGGGAGGCTCC  1000

seq1  AAG-ACCTGACACTATTACTGATGCTATGGT-GTGCTTACAG-ACAGGAA  1046
      ||| ||||||||||||||||||||||||||| |||||||||| |||||||
seq2  AAGAACCTGACACTATTACTGATGCTATGGTGGTGCTTACAGAACAGGAA  1050

seq1  CATGGCTGTCCTA-TGAGAG-ACTCAATAAAACACTTTTTAAAAAGACTC  1094
      ||| |||||| || |||||| ||||| ||| ||    ||| |||||||||
seq2  CAT-GCTGTCTTATTGAGAGAACTCATTAACAC----TTTCAAAAGACTC  1095

seq1  TAGTTATTAAGATCTAGCTATAAAAACCTGGGATCA-CCTATGTCACGTG  1143
      |||||||| ||||||||||||||||| || |||||| |||||||||||||
seq2  TAGTTATT-AGATCTAGCTATAAAAA-CTTGGATCACCCTATGTCACGTG  1143

seq1  TAGCAAGCATTTTATCAATATA  1165
      ||||| |||  |||||||||||
seq2  TAGCAGGCA--TTATCAATATA  1163


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