BAC Information

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BAC

Clone NameB6Ng01-328I16
Chromosome11 (Build37)
Map Location 96,426,965 - 96,547,566
singlet/doubletdoublet
Overlap geneSkap1
Upstream geneNgfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775
Downstream geneSnx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328I16.bB6Ng01-328I16.g
ACCGA115777GA115778
length252863
definitionB6Ng01-328I16.b B6Ng01-328I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,547,315 - 96,547,566)(96,426,965 - 96,427,825)
sequence
agatttccctgttcaaatggttacaatagtcttgtggtaataatagtagc
cctttatgctgggtaacagtgtagggtttgtggggtatgcccatagccct
ttatgctgggtaatagtgtagggtttgtggggtaccccatctctggtgcc
ttcttgtttctgacagggacagagaggcttcactaatccagcttccagaa
gttgaaacccaaaccccatacagtggggaagggacgggggatggtggggg
ga
gaattcatactcctcctgcctccacctctggtgctgagatttcagacata
taccaccacactctttctgtgcactctattgagtataaatacgttataag
agaacacgtagagtgagcaccactttttgaaatatacatctctgtttgca
ttcaaagaacctataatgcatgccactaaagtattttggcatactctcat
ttcacatatgggtgtgatatatttgtattggcttatgattccaagactga
aagctatttcttttgggattcctgcagatgtgcacatctttagaatcaga
agtttgggttctaggggtatcttctaaggaaatcagctaatcaggctcct
cgaggatcaaggaactggccgagcctaactgcttaattacgtgtggattg
gtttaataaattacagtgcagcctcgtgatggaataccctgcagccatta
aaagccaggttgtcagtagaggagccattattgtcataggagaatgttgg
tgatatatgaaaggcaggttgcagaacagcacagagcagggctgtgccag
gatgctcatgggcagggtttttctgggttctaggattatggaattttttt
ttaatgcttttctgcatttttctaagtttgacttttcagtgtattgattt
taaaacaacaagaagtcatgttggccataggtcagggtgggtacaggcct
ttaatccctggatgcaaggaggtggagactggcagatctctttgcgtttg
aagccatcgaggtctaccaagcaagctccaggccaggcaggaatatacag
ggagaccctgtctcaacaaacaacaacaaaatccaggagtggggtgtgtg
tgtgtgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96547315_96547566
seq2: B6Ng01-328I16.b_52_303 (reverse)

seq1  TCCCCCCACCATCCCCCGTCCCTTCCCCACTGTATGGGGTTTGGGTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCACCATCCCCCGTCCCTTCCCCACTGTATGGGGTTTGGGTTTCA  50

seq1  ACTTCTGGAAGCTGGATTAGTGAAGCCTCTCTGTCCCTGTCAGAAACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGAAGCTGGATTAGTGAAGCCTCTCTGTCCCTGTCAGAAACAAG  100

seq1  AAGGCACCAGAGATGGGGTACCCCACAAACCCTACACTATTACCCAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACCAGAGATGGGGTACCCCACAAACCCTACACTATTACCCAGCAT  150

seq1  AAAGGGCTATGGGCATACCCCACAAACCCTACACTGTTACCCAGCATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTATGGGCATACCCCACAAACCCTACACTGTTACCCAGCATAAA  200

seq1  GGGCTACTATTATTACCACAAGACTATTGTAACCATTTGAACAGGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACTATTATTACCACAAGACTATTGTAACCATTTGAACAGGGAAAT  250

seq1  CT  252
      ||
seq2  CT  252

seq1: chr11_96426965_96427825
seq2: B6Ng01-328I16.g_68_929

seq1  GAATTCATACTCCTCCTGCCTCCACCTCTGGTGCTGAGATTTCAGACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTCCTCCTGCCTCCACCTCTGGTGCTGAGATTTCAGACATA  50

seq1  TACCACCACACTCTTTCTGTGCACTCTATTGAGTATAAATACGTTATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCACACTCTTTCTGTGCACTCTATTGAGTATAAATACGTTATAAG  100

seq1  AGAACACGTAGAGTGAGCACCACTTTTTGAAATATACATCTCTGTTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACGTAGAGTGAGCACCACTTTTTGAAATATACATCTCTGTTTGCA  150

seq1  TTCAAAGAACCTATAATGCATGCCACTAAAGTATTTTGGCATACTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAACCTATAATGCATGCCACTAAAGTATTTTGGCATACTCTCAT  200

seq1  TTCACATATGGGTGTGATATATTTGTATTGGCTTATGATTCCAAGACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATATGGGTGTGATATATTTGTATTGGCTTATGATTCCAAGACTGA  250

seq1  AAGCTATTTCTTTTGGGATTCCTGCAGATGTGCACATCTTTAGAATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTTCTTTTGGGATTCCTGCAGATGTGCACATCTTTAGAATCAGA  300

seq1  AGTTTGGGTTCTAGGGGTATCTTCTAAGGAAATCAGCTAATCAGGCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGTTCTAGGGGTATCTTCTAAGGAAATCAGCTAATCAGGCTCCT  350

seq1  CGAGGATCAAGGAACTGGCCGAGCCTAACTGCTTAATTACGTGTGGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGATCAAGGAACTGGCCGAGCCTAACTGCTTAATTACGTGTGGATTG  400

seq1  GTTTAATAAATTACAGTGCAGCCTCGTGATGGAATACCCTGCAGCCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAAATTACAGTGCAGCCTCGTGATGGAATACCCTGCAGCCATTA  450

seq1  AAAGCCAGGTTGTCAGTAGAGGAGCCATTATTGTCATAGGAGAATGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGGTTGTCAGTAGAGGAGCCATTATTGTCATAGGAGAATGTTGG  500

seq1  TGATATATGAAAGGCAGGTTGCAGAACAGCACAGAGCAGGGCTGTGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATGAAAGGCAGGTTGCAGAACAGCACAGAGCAGGGCTGTGCCAG  550

seq1  GATGCTCATGGGCAGGGTTTTTCTGGGTTCTAGGATTATGGAATTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCATGGGCAGGGTTTTTCTGGGTTCTAGGATTATGGAATTTTTTT  600

seq1  TTAATGCTTTTCTGCATTTTTCTAAGTTTGACTTTTCAGTGTATTGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTTTTCTGCATTTTTCTAAGTTTGACTTTTCAGTGTATTGATTT  650

seq1  TAAAACAACAAGAAGTCATGTTGGCCATAGGTCAGGGTGGGTACAGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAACAAGAAGTCATGTTGGCCATAGGTCAGGGTGGGTACAGGCCT  700

seq1  TTAATCCCTGGATGCAAGGAGGTGGAGACTGGCAGATCTCTTTGCGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCTGGATGCAAGGAGGTGGAGACTGGCAGATCTCTTTGCGTTTG  750

seq1  AAGCCATCGAGGTCTACCAAGCAAGCTCCAGGCCAGGCAGGAATATACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATCGAGGTCTACCAAGCAAGCTCCAGGCCAGGCAGGAATATACAG  800

seq1  GGAGACCCTGTCTCAACAAACAACAACAAAATCCAGGAGT-GGGTGTGTG  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAGACCCTGTCTCAACAAACAACAACAAAATCCAGGAGTGGGGTGTGTG  850

seq1  TGTGTGGGGGGG  861
      ||||||||||||
seq2  TGTGTGGGGGGG  862