BAC Information

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BAC

Clone NameB6Ng01-329I09
Chromosome11 (Build37)
Map Location 54,983,983 - 55,107,057
singlet/doubletdoublet
Overlap geneSlc36a2, Slc36a1, Fat2
Upstream geneDbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3
Downstream geneSparc, Atox1, G3bp, Glra1, Nmur2, LOC100040816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329I09.bB6Ng01-329I09.g
ACCGA116463GA116464
length9571,170
definitionB6Ng01-329I09.b B6Ng01-329I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,983,983 - 54,984,939)(55,105,883 - 55,107,057)
sequence
gaattcagcgatgtataactgcatttatagtggggtctgctgccttggct
cccggcatccattcttctggattgattattcgtagtgaattctttttttt
ttttttttttttttgttgctaaatgcagctttggggaaactgaagattac
agagctggagggctggcctgtgagtcaggctctgcgatcagaaagacagg
ccaagtgacacaaagaccaactaaaactggtgaaagtgaccctgacagtg
aggtcccaaggggtgactcactcactctactgtttacacacagacgtaca
cacacagacacacacaaatacacagacacacacagatacacagacacaca
cagatacacagacacagacacacacacagacacacagacacacacacaca
cacagagactgctctggccttttcggacaccaccttttagctttctcttc
cattttataagtcagcttccatcattccagtacatttattttccacccta
aaattttcccagagttcctttctttcacttataacccctaagttccatca
gttattgcagtgtaactggcctagagagttgttacctctttttaaaaaca
aaaatattagattatttacattatcattttgtgtgtatgagtgttttgca
tgtttgtgttccatgtgtacgtctggtgcctggtgaggtcagaagtcagt
ccccagggactggaattaacagacacagacagctatcgagctgtcatgtg
agtggtgggaatgaaacctaggtcctctgcaggagcatcaagcgctctca
accaactaagcacctctccagcccccgttattcttttctttggctgaatt
agtactggcatttagaatgtcagtgctctctctctctctctctctctctc
tctctctctcttctctctcgtctctctctctctttccccccaccccttcc
cctcccc
gaattctctctgagaaatagaccatgggctttcctgagtgacagacagca
cctcctgtctggagtcactgacttggactgcccttcttcagacaagccac
ttaagtcttttgaatctctgtgacctgaggctaagatgccattgtgtcaa
aaggcatgtcctgagttctcataccacaccactaaactgaagcccagcct
tgtggccaatgcgtcacgtgacccacggtatgaactcaggggatgaacat
ggagtccccgcttctgcctacaaaggggagataaattactacagtgtttc
cctgggctacagtgaggattaaaggctgcgcatggagcttagggtgagga
ctgatcatagcagagcttggtgagtctgattcattacgtttgtgtttgtt
ggtagtgatttgcagtctatgagtacaaaacccaacttaggaattaccat
gcagtaagagagagtggctttttggggaagtccttctcatcactgtgatt
acatccctgacaagagcagcttacgggagggaagatctatttgggctcac
atttctagagggccttgtctgtgattacttggccatgcccatttgggcaa
acatcatgggtagcatcatgtggtaggaaagaagcattcacttcatggct
gaccagggagctgagaaaaagagattcaggtggtgactaaggcatgacat
agtctccaaagatgtgccttagtggcttctgtctcagcccatgcccactt
ctcatcatctcccatcatacttgcttcatactaagaacacatcaagggac
tgacccattaattaagtcagcacccttgcaatctaatcttttctgaaaat
gctatcacagagacacccaagggcatggtttactaattctcctagatatt
cctcaatggaattacattaggtacttctattgctgtgataggataccacg
acccaaaagcaaactttagaaagaaaggattcattatagcttatggttcc
agagggagagagtcatatggcaggaaggtagcagaacaggaggcagagag
cttcacattgtcatcacacacaggagccaaagggaaggcgaacggaattg
gggcaattgataatcctcaggccaggtacatactttctcagcgagatgca
tctcctaaagtttccgacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54983983_54984939
seq2: B6Ng01-329I09.b_47_1003

seq1  GAATTCAGCGATGTATAACTGCATTTATAGTGGGGTCTGCTGCCTTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGATGTATAACTGCATTTATAGTGGGGTCTGCTGCCTTGGCT  50

seq1  CCCGGCATCCATTCTTCTGGATTGATTATTCGTAGTGAATTCTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCATCCATTCTTCTGGATTGATTATTCGTAGTGAATTCTTTTTTTT  100

seq1  TTTTTTTTTTTTTTGTTGCTAAATGCAGCTTTGGGGAAACTGAAGATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGTTGCTAAATGCAGCTTTGGGGAAACTGAAGATTAC  150

seq1  AGAGCTGGAGGGCTGGCCTGTGAGTCAGGCTCTGCGATCAGAAAGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGAGGGCTGGCCTGTGAGTCAGGCTCTGCGATCAGAAAGACAGG  200

seq1  CCAAGTGACACAAAGACCAACTAAAACTGGTGAAAGTGACCCTGACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGACACAAAGACCAACTAAAACTGGTGAAAGTGACCCTGACAGTG  250

seq1  AGGTCCCAAGGGGTGACTCACTCACTCTACTGTTTACACACAGACGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCAAGGGGTGACTCACTCACTCTACTGTTTACACACAGACGTACA  300

seq1  CACACAGACACACACAAATACACAGACACACACAGATACACAGACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACACACACAAATACACAGACACACACAGATACACAGACACACA  350

seq1  CAGATACACAGACACAGACACACACACAGACACACAGACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACACAGACACAGACACACACACAGACACACAGACACACACACACA  400

seq1  CACAGAGACTGCTCTGGCCTTTTCGGACACCACCTTTTAGCTTTCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGACTGCTCTGGCCTTTTCGGACACCACCTTTTAGCTTTCTCTTC  450

seq1  CATTTTATAAGTCAGCTTCCATCATTCCAGTACATTTATTTTCCACCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATAAGTCAGCTTCCATCATTCCAGTACATTTATTTTCCACCCTA  500

seq1  AAATTTTCCCAGAGTTCCTTTCTTTCACTTATAACCCCTAAGTTCCATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCCCAGAGTTCCTTTCTTTCACTTATAACCCCTAAGTTCCATCA  550

seq1  GTTATTGCAGTGTAACTGGCCTAGAGAGTTGTTACCTCTTTTTAAAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCAGTGTAACTGGCCTAGAGAGTTGTTACCTCTTTTTAAAAACA  600

seq1  AAAATATTAGATTATTTACATTATCATTTTGTGTGTATGAGTGTTTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTAGATTATTTACATTATCATTTTGTGTGTATGAGTGTTTTGCA  650

seq1  TGTTTGTGTTCCATGTGTACGTCTGGTGCCTGGTGAGGTCAGAAGTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTTCCATGTGTACGTCTGGTGCCTGGTGAGGTCAGAAGTCAGT  700

seq1  CCCCAGGGACTGGAATTAACAGACACAGACAGCTATCGAGCTGTCATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGGACTGGAATTAACAGACACAGACAGCTATCGAGCTGTCATGTG  750

seq1  AGTGGTGGGAATGAAACCTAGGTCCTCTGCAGGAGCATCAAGCGCTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGGAATGAAACCTAGGTCCTCTGCAGGAGCATCAAGCGCTCTCA  800

seq1  ACCAACTAAGCACCTCTCCAGCCCCCGTTATTC-TTTCTTTGGCTGAATT  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCAACTAAGCACCTCTCCAGCCCCCGTTATTCTTTTCTTTGGCTGAATT  850

seq1  AGTACTGGCATTTAGAATGTCAGTGCTCTCTCTCTCTCTCTCTCTCTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGGCATTTAGAATGTCAGTGCTCTCTCTCTCTCTCTCTCTCTCTC  900

seq1  TCTCTCTCTCTTCCTCTCTTCCTCTCTCTCTCTCTTT-CCCCCACCCCTC  948
      |||||||||||| ||||| || ||||||||||||||| ||||||||||| 
seq2  TCTCTCTCTCTT-CTCTC-TCGTCTCTCTCTCTCTTTCCCCCCACCCCTT  948

seq1  CCCCTCCCC  957
      |||||||||
seq2  CCCCTCCCC  957

seq1: chr11_55105883_55107057
seq2: B6Ng01-329I09.g_66_1235 (reverse)

seq1  TTGT-GGAACCTTTAGGAGATGCAATCTTGCTGGAGAAAGTATGTCACTG  49
      |||| |||| ||||||||||||| |||| ||| ||||||||||||  |||
seq2  TTGTCGGAAACTTTAGGAGATGC-ATCTCGCT-GAGAAAGTATGTACCTG  48

seq1  GCTTTGAGGGTTTATCATTTTGCCCCATTTCCTGTTCCGCCTCCCTTTGC  99
      ||  ||| || ||||||  |||||||| |||| ||||  | |||||||| 
seq2  GC-CTGA-GGATTATCA-ATTGCCCCAATTCC-GTTCGCCTTCCCTTTGG  94

seq1  TTCCTGTGTGTGGATGAC-ATGTG-AGCTCTCTGCTTCCTGTTCCTGCTA  147
       |||||||||| |||||| ||||| |||||||||| ||||||| ||||||
seq2  CTCCTGTGTGT-GATGACAATGTGAAGCTCTCTGCCTCCTGTT-CTGCTA  142

seq1  CCTTCCTGCCATTATGAACTCTCTCCCTCTGGAACCATAAGCTATAATGA  197
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  CCTTCCTGCCA-TATG-ACTCTCTCCCTCTGGAACCATAAGCTATAATGA  190

seq1  ATCCTTTCTTTCTAAAGTTTGCTTTT-GGTCGTGGTATCTTATCACAGCA  246
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  ATCCTTTCTTTCTAAAGTTTGCTTTTGGGTCGTGGTATCCTATCACAGCA  240

seq1  ATAGAAGTACCTAATGTAATTCCATTGAGGAATATCTAGGAG-ATTAGTA  295
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATAGAAGTACCTAATGTAATTCCATTGAGGAATATCTAGGAGAATTAGTA  290

seq1  AACCATGCCCTTGGGTGTCTCTGTGATAGCATTTTCAGAAAAGATTAGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGCCCTTGGGTGTCTCTGTGATAGCATTTTCAGAAAAGATTAGAT  340

seq1  TGCAAGGGTGCTGACTTAATTAATGGGTCAGTCCCTTGATGTGTTCTTAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGGTGCTGACTTAATTAATGGGTCAGTCCCTTGATGTGTTCTTAG  390

seq1  TATGAAGCAAGTATGATGGGAGATGATGAGAAGTGGGCATGGGCTGAGAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCAAGTATGATGGGAGATGATGAGAAGTGGGCATGGGCTGAGAC  440

seq1  AGAAGCCACTAAGGCACATCTTTGGAGACTATGTCATGCCTTAGTCACCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCACTAAGGCACATCTTTGGAGACTATGTCATGCCTTAGTCACCA  490

seq1  CCTGAATCTCTTTTTCTCAGCTCCCTGGTCAGCCATGAAGTGAATGCTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCTCTTTTTCTCAGCTCCCTGGTCAGCCATGAAGTGAATGCTTC  540

seq1  TTTCCTACCACATGATGCTACCCATGATGTTTGCCCAAATGGGCATGGCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACCACATGATGCTACCCATGATGTTTGCCCAAATGGGCATGGCC  590

seq1  AAGTAATCACAGACAAGGCCCTCTAGAAATGTGAGCCCAAATAGATCTTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCACAGACAAGGCCCTCTAGAAATGTGAGCCCAAATAGATCTTC  640

seq1  CCTCCCGTAAGCTGCTCTTGTCAGGGATGTAATCACAGTGATGAGAAGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGTAAGCTGCTCTTGTCAGGGATGTAATCACAGTGATGAGAAGGA  690

seq1  CTTCCCCAAAAAGCCACTCTCTCTTACTGCATGGTAATTCCTAAGTTGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAAAAAGCCACTCTCTCTTACTGCATGGTAATTCCTAAGTTGGG  740

seq1  TTTTGTACTCATAGACTGCAAATCACTACCAACAAACACAAACGTAATGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTACTCATAGACTGCAAATCACTACCAACAAACACAAACGTAATGA  790

seq1  ATCAGACTCACCAAGCTCTGCTATGATCAGTCCTCACCCTAAGCTCCATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACTCACCAAGCTCTGCTATGATCAGTCCTCACCCTAAGCTCCATG  840

seq1  CGCAGCCTTTAATCCTCACTGTAGCCCAGGGAAACACTGTAGTAATTTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCCTTTAATCCTCACTGTAGCCCAGGGAAACACTGTAGTAATTTAT  890

seq1  CTCCCCTTTGTAGGCAGAAGCGGGGACTCCATGTTCATCCCCTGAGTTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTTGTAGGCAGAAGCGGGGACTCCATGTTCATCCCCTGAGTTCA  940

seq1  TACCGTGGGTCACGTGACGCATTGGCCACAAGGCTGGGCTTCAGTTTAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTGGGTCACGTGACGCATTGGCCACAAGGCTGGGCTTCAGTTTAGT  990

seq1  GGTGTGGTATGAGAACTCAGGACATGCCTTTTGACACAATGGCATCTTAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTATGAGAACTCAGGACATGCCTTTTGACACAATGGCATCTTAG  1040

seq1  CCTCAGGTCACAGAGATTCAAAAGACTTAAGTGGCTTGTCTGAAGAAGGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTCACAGAGATTCAAAAGACTTAAGTGGCTTGTCTGAAGAAGGG  1090

seq1  CAGTCCAAGTCAGTGACTCCAGACAGGAGGTGCTGTCTGTCACTCAGGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAAGTCAGTGACTCCAGACAGGAGGTGCTGTCTGTCACTCAGGAA  1140

seq1  AGCCCATGGTCTATTTCTCAGAGAGAATTC  1175
      ||||||||||||||||||||||||||||||
seq2  AGCCCATGGTCTATTTCTCAGAGAGAATTC  1170