BAC Information

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BAC

Clone NameB6Ng01-330B11
Chromosome11 (Build37)16 (Build37)
Map Location 116,026,894 - 116,028,00982,342,008 - 82,342,390
singlet/doubletsingletsinglet
Overlap geneFbf1
Upstream geneSlc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38
Downstream geneAcox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330B11.bB6Ng01-330B11.g
ACCGA116866GA116867
length1,118656
definitionB6Ng01-330B11.b B6Ng01-330B11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,026,894 - 116,028,009)(82,342,008 - 82,342,390)
sequence
gaattctttttgaactttacttactcatctggcgtagtggagcacacacg
cacatggaggtaaaaggaagacttgcaggagtcaattctctacctccata
atgcgtgtcctgggctatccaactcagataggcaggcctgctggcaatag
cacctttactcactgaatggcattcaattcaggaattctgggattataga
aataggtttgaccaattcctggctgtcctggaacttgcgctgtaaaccag
gctggcttcacgctctgagatctgcctgcctctacctcctgcgtgctatg
attaaaggcatgaaccactgctaccctgctgggttttgatctcttaagtg
aaggattcttaagagccttggagccaagcactgggaaatgctgaattcta
ccttttatttatgtgtatttatttatttttgagacttgcgtagcccaggt
tggccctgaatttgctatgtagctgaggatagccttgagattcgggattt
ttttttaacctcttcccaagtcctggtatttcagcattatgctgtgtcca
gattttgtttttaattctatgaatgtgtgtgtgcatgtgggtgcagatgc
ccatgggtgctaaaggcttggatccccctggacctggggtgctggggggc
ttgtgatctacccaacacagtgctggaaacccaactcatgtcctctgcaa
aaccagtttgggctcttggctcctaagccggccatcgctccagcttccat
cttttaagcagtttcttttattttctctattagggaagatgagcttgctg
ggcaagaatacacatgactggacagtgctgtgaggagctgcagagagccc
cgaatcccacgatggtatgcagagtacagcactagacacatgaagataga
cacgatgcaccccaccccatgccacccgaccctcatcatcctggtctgca
tagaatagaagctctgtggaagggaccagcgctggtcccatgccagggca
cattaggaaaatcaagcaactgagctgggtctatcatcctacacgtaaag
gcagaaacaggcaggccgattgtcttgataattccagtacagcctgtttt
gacttggcaagcctctgg
gaattcaaggccagcctggtctacaaagtgagttccaggacaaccagggc
tatgcagaaaaacatgtcttgaaaaacaaaaattctgggtgctgtgatat
ggctacatcattaatctgagtcccagcacccacatgaggtgacctataaa
cccagtttggaaaggtgcaaatctaactctcttttccggcccctgtcatg
actcccgtacacacacaatatatgttcaaacacactgaaggcacatggag
tggagggggaaagagagaaagaatggggggaaggcagtgtgttgtgggac
gagcagcatttgggatgaaaagagagagagagagagagagagagagagag
agagagagagaaatcttaggatctctccaaagataaagagttagcctgca
tattttcactttagcctctcaaaatgaaagcccagatcattgatttgatt
ggtgtttttgtttttgtttgttgttttgtttaaattatgcatttggtgat
atacaataaataaataaaataaaaaataacataacataaactagagaatt
ttaccattgttgactgtaatatatataatatattttacagattctaaact
aaaagcatagagaacagaaagatagagaaagatatttcaaataataagat
atacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116026894_116028009
seq2: B6Ng01-330B11.b_46_1163 (reverse)

seq1  CCAGA-GCTTGCCACGTCAAAACAGGCTGTCCTGGAATCA-CAAGA-GAT  47
      ||||| |||||||| ||||||||||||||| ||||||| | |||||  ||
seq2  CCAGAGGCTTGCCAAGTCAAAACAGGCTGTACTGGAATTATCAAGACAAT  50

seq1  CCGCCTGCCTGTCTCTGCCTCTACGTTCTAGGATGAAAGGCCCAGCTCAG  97
      | |||||||||| ||||||| |||| | |||||||| || ||||||||||
seq2  CGGCCTGCCTGTTTCTGCCTTTACG-TGTAGGATGATAGACCCAGCTCAG  99

seq1  TTGCTTGATTTTCCTAATGTTGCCCTGGCATGGGACCAGCGCTGGTCCTT  147
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  TTGCTTGATTTTCCTAATG-TGCCCTGGCATGGGACCAGCGCTGGTCCCT  148

seq1  GCCACAGAGCTTCTATTCTATGCAG-CCAGGATGATGAGGGTCGGGTGGC  196
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCCACAGAGCTTCTATTCTATGCAGACCAGGATGATGAGGGTCGGGTGGC  198

seq1  ATGGGGTGGGGTGCATCGTGTCTATCTTCATGTGTCTAGTGCTGTACTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTGGGGTGCATCGTGTCTATCTTCATGTGTCTAGTGCTGTACTCT  248

seq1  GCCTACCATCCTGGGCTTCGGGGCTCTCTGCAGCTCCTCACAGCACTGTC  296
      || ||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  GCATACCATCGTGGGATTCGGGGCTCTCTGCAGCTCCTCACAGCACTGTC  298

seq1  CAGTCATGTGTATTCTTGCCCAGCAAGCTCATCTTCCCTAATAGAGAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATGTGTATTCTTGCCCAGCAAGCTCATCTTCCCTAATAGAGAAAA  348

seq1  TAAAAGAAACTGCTTAAAAGATGGAAGCTGGAGCGATGGCCGGCTTAGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAACTGCTTAAAAGATGGAAGCTGGAGCGATGGCCGGCTTAGGA  398

seq1  GCCAAGAGCCCAAACTGGTTTTGCAGAGGACCTGAGTTGGGTTTCCAGCA  446
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCAAGAGCCCAAACTGGTTTTGCAGAGGACATGAGTTGGGTTTCCAGCA  448

seq1  CTGTGTTGGGTAGATCACAAGCCCCCCAGCACCCCAGGTCCAGGGGGATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGGGTAGATCACAAGCCCCCCAGCACCCCAGGTCCAGGGGGATC  498

seq1  CAAGCCTCTAGCACCCATGGGCATCTGCACCCACATGCACACACACATTC  546
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTTTAGCACCCATGGGCATCTGCACCCACATGCACACACACATTC  548

seq1  ATAGAATTAAAAACAAAATCTGGACACAGCATAATGCTGAAATACCAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTAAAAACAAAATCTGGACACAGCATAATGCTGAAATACCAGGA  598

seq1  CTTGGGAAGAGGTTAAAAAAAAATCCCGAATCTCAAGGCTATCCTCAGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAGAGGTTAAAAAAAAATCCCGAATCTCAAGGCTATCCTCAGCT  648

seq1  ACATAGCAAATTCAGGGCCAACCTGGGCTACGCAAGTCTCAAAAATAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAAATTCAGGGCCAACCTGGGCTACGCAAGTCTCAAAAATAAAT  698

seq1  AAATACACATAAATAAAAGGTAGAATTCAGCATTTCCCAGTGCTTGGCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACATAAATAAAAGGTAGAATTCAGCATTTCCCAGTGCTTGGCTC  748

seq1  CAAGGCTCTTAAGAATCCTTCACTTAAGAGATCAAAACCCAGCAGGGTAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTCTTAAGAATCCTTCACTTAAGAGATCAAAACCCAGCAGGGTAG  798

seq1  CAGTGGTTCATGCCTTTAATCATAGCACGCAGGAGGTAGAGGCAGGCAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTCATGCCTTTAATCATAGCACGCAGGAGGTAGAGGCAGGCAGA  848

seq1  TCTCAGAGCGTGAAGCCAGCCTGGTTTACAGCGCAAGTTCCAGGACAGCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGCGTGAAGCCAGCCTGGTTTACAGCGCAAGTTCCAGGACAGCC  898

seq1  AGGAATTGGTCAAACCTATTTCTATAATCCCAGAATTCCTGAATTGAATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGGTCAAACCTATTTCTATAATCCCAGAATTCCTGAATTGAATG  948

seq1  CCATTCAGTGAGTAAAGGTGCTATTGCCAGCAGGCCTGCCTATCTGAGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAGTGAGTAAAGGTGCTATTGCCAGCAGGCCTGCCTATCTGAGTT  998

seq1  GGATAGCCCAGGACACGCATTATGGAGGTAGAGAATTGACTCCTGCAAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCCCAGGACACGCATTATGGAGGTAGAGAATTGACTCCTGCAAGT  1048

seq1  CTTCCTTTTACCTCCATGTGCGTGTGTGCTCCACTACGCCAGATGAGTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTACCTCCATGTGCGTGTGTGCTCCACTACGCCAGATGAGTAA  1098

seq1  GTAAAGTTCAAAAAGAATTC  1116
      ||||||||||||||||||||
seq2  GTAAAGTTCAAAAAGAATTC  1118

seq1: chr16_82342008_82342390
seq2: B6Ng01-330B11.g_337_723

seq1  AGAATGGGAGAGGGACAGTGTGTTGTGGGACGAGCAGCATTTGGGATGAA  50
      |||||||| |   | |||||||||||||||||||||||||||||||||||
seq2  AGAATGGGGGGAAGGCAGTGTGTTGTGGGACGAGCAGCATTTGGGATGAA  50

seq1  AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATCTTAG  100

seq1  GATCTCTCCAAAGATAAAGAGTTAGCCTGCATATTTTCACTTTAGCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTCCAAAGATAAAGAGTTAGCCTGCATATTTTCACTTTAGCCTCT  150

seq1  CAAAATGAAAGCCCAGATCATTGATTTGATTGGTGTTTTTGTTTTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAAAGCCCAGATCATTGATTTGATTGGTGTTTTTGTTTTTGTTT  200

seq1  GTTGTTTTGTTTAAATTATGCATTTGGTGATATACAATAAATAAATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTGTTTAAATTATGCATTTGGTGATATACAATAAATAAATAAAA  250

seq1  TAAAAAATAACATAACATAAACTAGAGAATTTTACCATTG-TGACTGTAA  299
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAAAAAATAACATAACATAAACTAGAGAATTTTACCATTGTTGACTGTAA  300

seq1  TATATAT-ATATATTTTACAGATTCTAAACT-AAAGCATAGAGAACAGAA  347
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  TATATATAATATATTTTACAGATTCTAAACTAAAAGCATAGAGAACAGAA  350

seq1  AGATAGAGAAAGATA-TACAAATAATAAGATATACAA  383
      ||||||||||||||| | |||||||||||||||||||
seq2  AGATAGAGAAAGATATTTCAAATAATAAGATATACAA  387