BAC Information

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BAC

Clone NameB6Ng01-330C13
Chromosome11 (Build37)3 (Build37)
Map Location 106,547,945 - 106,548,000114,825,934 - 114,827,101
singlet/doubletsingletsinglet
Overlap genePecam1
Upstream geneTanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2
Downstream geneGm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330C13.bB6Ng01-330C13.g
ACCGA116917GA116918
length9921,165
definitionB6Ng01-330C13.b B6Ng01-330C13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,547,945 - 106,548,000)(114,825,934 - 114,827,101)
sequence
gaattcaggtaggattgttacctattcagtaacagtcaaaattacctcta
gcattgtgggagagacaggaaaagaaattaggtattgcaatttacttgaa
tagagctagaaatctcacggctagtctacatggtaaatacttaggacaat
agctgagccactcccagacacaggaatttacctggcctaggaagaaggtg
ggttgtggtcttagggggaactgaagtattattcatgaaagggttagtag
aacttgcctggtgcctgtttttcactaggcccagaggaatagcataatca
agtatttactaaagggcccctcgtggtgggtttaacaatagactagaatt
ggaactatggcaagggcatgaagcccttgaccctggcttctaagattaag
ctgactttaagtggggctgcttttgattccagttgttaacattgattttt
atcccaattggttcctgttagcattttgtatacatccctctgttttgtgt
aaaagtcacttttaagtcggcttgctttgtgacaaattacattcaggtac
tacactcccttgtgtctgtgtctgtttatgaccctttgtcaccgactccc
tgcccacctgtaccggaaccctgatttctcctggggactgaggagggacg
actgaggccagactgtggcaacttcataaacataagatgagcaaagaaaa
caataacagacgtgctaaagtgggctggagaaaggccatcatgcaacagt
attatacaaagaaccacaggcaactgaagaatcctgagaatgggattcca
tcctgagagtgtaatgttcatattacccataaatcaacctttcctagaga
aatgcttatcccaaatcaaatggtcagaactgacaacatgcatacattaa
gactgagtaggttatatttagcaatacacacatatatgcacatacttata
ttgtgtttttgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctttttaacatagggaaattacttctaacctcattgacatgttca
taagttgttgattataatttctgtggaattagtaacacaaatgttatcaa
agtttttactttcagtttctttaattttgcgcacacagtgagacaagttc
tcaggggattgaattctcatttaattttctgaattggttatttatacact
tgaaacaaaaataactcccaattcttttcatagttttcttttatacaagc
tttccaataactctccagggtttataattttaatatagaaagcattgaat
aaatttcctctttttaataatcttcatgtgcttcatattgtataagaaat
gacatttttgaaagttgtatgtaagatatgttaaaatattaatatatatg
tatgctactaatactaataatgataagtgaatagaatcatattgagtata
acacagtgacacattttacaaagaattatatgaattcttttaagaaacag
ggtatcactacattgaattggtgttcaaatccagagccaatggtagagtg
ctggataaaacaaaggttgtatatatattatctaatacttttttaaaaaa
tttttgtagtgcttatgagaaggggcaagccaagatgatctttctcaacc
agacttgagaactgacttgagtaattactgagattaaattttagtgcact
ttataaaaaatatgactttcacagaagtgaaggaatacaatatatgatgg
tggttacactggtagaaatatgtattgccaggaaaatgtgagcaagagat
ttagaaatgactgcacagcaccgcatcagagaatatggtaagagtaacat
gattgatagtgtttcccatataaataaaatctttaaatcttcttgtagaa
ataaatggggggaaagtgcttttcttttaccttaatttctatgaaaatat
tcttgatgtagaccagagacagtaaaaataatgacagttaaaagagagac
attcatgcatttaagccaccggttaatctgattctaatacaaggcagatc
attatcttttgcaaactatgattctggcactaaactctttttagtgcttt
tcatgaggaaggccatgataggcccttgttaaatttggggatttagaatt
gtattcccacacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_106547945_106548000
seq2: B6Ng01-330C13.b_973_1039 (reverse)

seq1  ACACACACACACACACACACACACACACACG-----------TATGTGTG  39
      |||||||||||||||||||||||||||||||           |||  || 
seq2  ACACACACACACACACACACACACACACACGCAAAAACACAATATAAGTA  50

seq1  TGTATATATATGTGTGT  56
      |||  ||||||||||||
seq2  TGTGCATATATGTGTGT  67

seq1: chr3_114825934_114827101
seq2: B6Ng01-330C13.g_67_1231 (reverse)

seq1  AGTGTGTTGGAAATACA--TCTTAAATCCCAAATTTA--CAGGGCCTATC  46
      |||||| ||| ||||||  ||| ||  ||||||||||   ||||||||||
seq2  AGTGTG-TGGGAATACAATTCTAAATCCCCAAATTTAACAAGGGCCTATC  49

seq1  ATGCCCTT-CTCATGAAAAGCACTAAAAAGAGTTTAAGTGGCCAGAATCA  95
      ||| |||| |||||||||||||||||||||||||| ||| ||||||||||
seq2  ATGGCCTTCCTCATGAAAAGCACTAAAAAGAGTTT-AGT-GCCAGAATCA  97

seq1  TAGTTTTGCAAAAGATTAATGATCTGCCTTGTATTAGAATCAGATTAA-C  144
      ||| ||||||||||| |||||||||||||||||||||||||||||||| |
seq2  TAG-TTTGCAAAAGA-TAATGATCTGCCTTGTATTAGAATCAGATTAACC  145

seq1  GGTGGCTTAAATGCATGAATGTCTTCTCTTTTTAACTGTCATTATTTTTA  194
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  GGTGGCTTAAATGCATGAATGTC-TCTC-TTTTAACTGTCATTATTTTTA  193

seq1  CTGTCTCTTGGTCTACATCAAGAAATATTTTCATAGAAATTAAGGTAAAA  244
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  CTGTCTC-TGGTCTACATCAAG-AATATTTTCATAGAAATTAAGGTAAAA  241

seq1  GAAAAGCACTTTCCCCCCATTTATTTCTACAAGAAGATTTAAAGATTTTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCACTTTCCCCCCATTTATTTCTACAAGAAGATTTAAAGATTTTA  291

seq1  TTTATATGGGAAACACTATCAATCATGTTACTCTTACCATATTCTCTGAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGGGAAACACTATCAATCATGTTACTCTTACCATATTCTCTGAT  341

seq1  GCGGTGCTGTGCAGTCATTTCTAAATCTCTTGCTCACATTTTCCTGGCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGCTGTGCAGTCATTTCTAAATCTCTTGCTCACATTTTCCTGGCAA  391

seq1  TACATATTTCTACCAGTGTAACCACCATCATATATTGTATTCCTTCACTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTTCTACCAGTGTAACCACCATCATATATTGTATTCCTTCACTT  441

seq1  CTGTGAAAGTCATATTTTTTATAAAGTGCACTAAAATTTAATCTCAGTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAGTCATATTTTTTATAAAGTGCACTAAAATTTAATCTCAGTAA  491

seq1  TTACTCAAGTCAGTTCTCAAGTCTGGTTGAGAAAGATCATCTTGGCTTGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAGTCAGTTCTCAAGTCTGGTTGAGAAAGATCATCTTGGCTTGC  541

seq1  CCCTTCTCATAAGCACTACAAAAATTTTTTAAAAAAGTATTAGATAATAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCATAAGCACTACAAAAATTTTTTAAAAAAGTATTAGATAATAT  591

seq1  ATATACAACCTTTGTTTTATCCAGCACTCTACCATTGGCTCTGGATTTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAACCTTTGTTTTATCCAGCACTCTACCATTGGCTCTGGATTTGA  641

seq1  ACACCAATTCAATGTAGTGATACCCTGTTTCTTAAAAGAATTCATATAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAATTCAATGTAGTGATACCCTGTTTCTTAAAAGAATTCATATAAT  691

seq1  TCTTTGTAAAATGTGTCACTGTGTTATACTCAATATGATTCTATTCACTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAAAATGTGTCACTGTGTTATACTCAATATGATTCTATTCACTT  741

seq1  ATCATTATTAGTATTAGTAGCATACATATATATTAATATTTTAACATATC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATTAGTATTAGTAGCATACATATATATTAATATTTTAACATATC  791

seq1  TTACATACAACTTTCAAAAATGTCATTTCTTATACAATATGAAGCACATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATACAACTTTCAAAAATGTCATTTCTTATACAATATGAAGCACATG  841

seq1  AAGATTATTAAAAAGAGGAAATTTATTCAATGCTTTCTATATTAAAATTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTATTAAAAAGAGGAAATTTATTCAATGCTTTCTATATTAAAATTA  891

seq1  TAAACCCTGGAGAGTTATTGGAAAGCTTGTATAAAAGAAAACTATGAAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTGGAGAGTTATTGGAAAGCTTGTATAAAAGAAAACTATGAAAA  941

seq1  GAATTGGGAGTTATTTTTGTTTCAAGTGTATAAATAACCAATTCAGAAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGAGTTATTTTTGTTTCAAGTGTATAAATAACCAATTCAGAAAA  991

seq1  TTAAATGAGAATTCAATCCCCTGAGAACTTGTCTCACTGTGTGCGCAAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAGAATTCAATCCCCTGAGAACTTGTCTCACTGTGTGCGCAAAA  1041

seq1  TTAAAGAAACTGAAAGTAAAAACTTTGATAACATTTGTGTTACTAATTCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAACTGAAAGTAAAAACTTTGATAACATTTGTGTTACTAATTCC  1091

seq1  ACAGAAATTATAATCAACAACTTATGAACATGTCAATGAGGTTAGAAGTA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATTATAATCAACAACTTATGAACATGTCAATGAGGTTAGAAGTA  1141

seq1  ATTTCCCTATGTTAAAAAGAATTC  1168
      ||||||||||||||||||||||||
seq2  ATTTCCCTATGTTAAAAAGAATTC  1165