BAC Information

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BAC

Clone NameB6Ng01-330J09
Chromosome11 (Build37)
Map Location 41,946,134 - 42,037,836
singlet/doubletdoublet
Overlap geneGabra1
Upstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292, Gabrg2
Downstream geneGabra6, Gabrb2, Atp10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330J09.bB6Ng01-330J09.g
ACCGA117205GA117206
length1,149896
definitionB6Ng01-330J09.b B6Ng01-330J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,946,134 - 41,947,300)(42,037,293 - 42,037,836)
sequence
gaattcttgggtgaatgggctatctgggaataagagtaaaaaggatagtt
tttaaattattccattcttttatttatttcagattctatcaagtaaacat
ctgtgttaggctggctgatctctatagagtctactggtaaaagttcagat
gacagcagtgtagcccattgaaagggtttcccccacactggattcagaat
gctacagtgatagccccaccttgccctatttgttaggctttcttacattc
taaaatagcatttaacaacaaaatattacatagtgaaatttaaaaagaga
aagcctagggaatttttaatttgacaaacaaaacattaaatctatatatc
agcttcaacattgacgaataaaaacataagcacactatatcatttgtgca
ataaagacataggtttaaagttcattaaacatttgttatttgccctttta
aacactttcacacaaaaatatttttgacgtatatatttttttagaatatt
tggaaatatatatctacaaatgactctgtggttacagttaagctctggtt
ttttctactttttctcctatctttggaccttcttaccctctctcttcctc
ttgtctatctccgtctgacatgcttttgctccctggcttcctctcagaat
cctgtccctgagctgaatactctgctctgctctggactgtcagacagggg
tctcttgttcttgtatgaaatatggaaataaggaaaccttcaaattcttt
aggacagaggcagtaaagcagataggaatcactgcgttgagaacagaaag
caattctcggtgcagaggactgaacaacagaatacgactaaaagaaccta
ttgatggggtgtgggggcttttagctgaggctctctgtttaaatacgtgg
cccaatagactaagttaaagattccaaatagcagcggaaaggcttattct
tgacagtcggtcgatttgctgacgctgttaaaggtttcttgggtcttggt
tgttttgtctcaagcttgacttctttcggtctatggtcgcactttagcat
agttgccaagcgggtcacccctggctagtaggtatagctgttgctgtagg
aacatattgtgttttcttaatgaaaggatcttacttccttgctggagaa

gaattcctatggcatatcttgttaggctcatagattggtaccttgcacag
tcatcatcagagatgcttccttcttcagcagatgggaacataatcaaaga
cccacagccaataattatgtgtggactctaagctggaagtcttcatcagg
tcttgctccttggagctcagggaatcctgtgggatgctggaagactgtag
gaatcagaggggacagaggacaccaggagaacatggaccactcaataaac
aaagcagggctcacacaggctcacagagtctaaagtggcaagtacttgcc
tgcatgggtctgcagatcctctgtatgtatgttatagttgttggctttgt
gtatttgtggggatcctaacagtgggagagggtgtgtctccggctctttt
gcctgcacttgaaactcttttgctcctactggtttgctttttccaacctc
catagaagggcttttgccttgtcttactgtattttgtttgcttctgtttg
actattgcctcttggaggcctgtacattcctgaagagagatggaagggca
attgatttagaggagagggtaagagtggggaacttggaagagtagacaga
agagaaactgtggtcagaatgtactgtatgagagaagaatctatttttta
tttttttttaaagtgaattttaaaaattctgcttgtgaaataaaaataat
taaaagacattttcatgtggttctctttactcaaaaaaaaaaaaccttaa
gattatacagatttgtctcttattttaaaagaatttaagttcagcagcaa
tcccagaccatcacggaatttcatctgaattatttaaaagaccctaatgg
gttatttattttcaacaaactagaaatttcttggatcctgttatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41946134_41947300
seq2: B6Ng01-330J09.b_47_1195

seq1  GAATTCTTGGGTGAATGGGCTATCTGGGAATAAGAGTAAAAAGGATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGTGAATGGGCTATCTGGGAATAAGAGTAAAAAGGATAGTT  50

seq1  TTTAAATTATTCCATTCTTTTATTTATTTCAGATTCTATCAAGTAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTATTCCATTCTTTTATTTATTTCAGATTCTATCAAGTAAACAT  100

seq1  CTGTGTTAGGCTGGCTGATCTCTATAGAGTCTACTGGTAAAAGTTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTAGGCTGGCTGATCTCTATAGAGTCTACTGGTAAAAGTTCAGAT  150

seq1  GACAGCAGTGTAGCCCATTGAAAGGGTTTCCCCCACACTGGATTCAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGTGTAGCCCATTGAAAGGGTTTCCCCCACACTGGATTCAGAAT  200

seq1  GCTACAGTGATAGCCCCACCTTGCCCTATTTGTTAGGCTTTCTTACATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTGATAGCCCCACCTTGCCCTATTTGTTAGGCTTTCTTACATTC  250

seq1  TAAAATAGCATTTAACAACAAAATATTACATAGTGAAATTTAAAAAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGCATTTAACAACAAAATATTACATAGTGAAATTTAAAAAGAGA  300

seq1  AAGCCTAGGGAATTTTTAATTTGACAAACAAAACATTAAATCTATATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGGGAATTTTTAATTTGACAAACAAAACATTAAATCTATATATC  350

seq1  AGCTTCAACATTGACGAATAAAAACATAAGCACACTATATCATTTGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAACATTGACGAATAAAAACATAAGCACACTATATCATTTGTGCA  400

seq1  ATAAAGACATAGGTTTAAAGTTCATTAAACATTTGTTATTTGCCCTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACATAGGTTTAAAGTTCATTAAACATTTGTTATTTGCCCTTTTA  450

seq1  AACACTTTCACACAAAAATATTTTTGACGTATATATTTTTTTAGAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTCACACAAAAATATTTTTGACGTATATATTTTTTTAGAATATT  500

seq1  TGGAAATATATATCTACAAATGACTCTGTGGTTACAGTTAAGCTCTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATATATATCTACAAATGACTCTGTGGTTACAGTTAAGCTCTGGTT  550

seq1  TTTTCTACTTTTTCTCCTATCTTTGGACCTTCTTACCCTCTCTCTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTTTTTCTCCTATCTTTGGACCTTCTTACCCTCTCTCTTCCTC  600

seq1  TTGTCTATCTCCGTCTGACATGCTTTTGCTCCCTGGCTTCCTCTCAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATCTCCGTCTGACATGCTTTTGCTCCCTGGCTTCCTCTCAGAAT  650

seq1  CCTGTCCCTGAGCTGAATACTCTGCTCTGCTCTGGACTGTCAGACAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCCTGAGCTGAATACTCTGCTCTGCTCTGGACTGTCAGACAGGGG  700

seq1  TCTCTTGTTCTTGTATGAAATATGGAAATAAGGAAACCTTCAAATTCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTTCTTGTATGAAATATGGAAATAAGGAAACCTTCAAATTCTTT  750

seq1  AGGACAGAGGCAGTAAAGCAGATAGGAATCACTGCGTTGAGAACAGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAGGCAGTAAAGCAGATAGGAATCACTGCGTTGAGAACAGAAAG  800

seq1  CAATTCTCGGTGCAGAGGACTGAACAACAGAATACGACTAAAAGAACCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCGGTGCAGAGGACTGAACAACAGAATACGACTAAAAGAACCTA  850

seq1  TTGATGGGGTGTGGGGGCTTTTAGCTGAGGCTCTCTGTTTAAATACGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGGGTGTGGGGGCTTTTAGCTGAGGCTCTCTGTTTAAATACGTGG  900

seq1  CCCAATAGACTAAGTTAAAGATTCCAAATAGCAGCGGAAAGGC-TATTCT  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCAATAGACTAAGTTAAAGATTCCAAATAGCAGCGGAAAGGCTTATTCT  950

seq1  TGACAGTCGGTCGATTTTGCTGACGCTGTTAAAGGTTTTCTTGGGTTCTG  999
      |||||||||||||| |||||||||||||||||||| ||||||||||  ||
seq2  TGACAGTCGGTCGA-TTTGCTGACGCTGTTAAAGG-TTTCTTGGGTCTTG  998

seq1  GTGGTTTTGTCTCAGGCTTGACTTCTTTCGGTTCTATGGTCGCACTTTTA  1049
      || ||||||||||| |||||||||||||||| ||||||||||||| ||||
seq2  GTTGTTTTGTCTCAAGCTTGACTTCTTTCGG-TCTATGGTCGCAC-TTTA  1046

seq1  GCAATAGTTGCCAAGCCGGGGTCACCCCTGGCTAAGTTAGGGGTATAGCT  1099
      || |||||||||||||  ||||||||||||||| |||    |||||||||
seq2  GC-ATAGTTGCCAAGC--GGGTCACCCCTGGCT-AGT---AGGTATAGCT  1089

seq1  GGTTGCTGTAGGAGCATATGTGTTGTTTTTCTTAATGAGAGGATCCTTTA  1149
       |||||||||||| ||||| |||   |||||||||||| ||||||  |||
seq2  -GTTGCTGTAGGAACATAT-TGT--GTTTTCTTAATGAAAGGATC--TTA  1133

seq1  CTTTCTTTGGCTGGAGAA  1167
      ||| |||  |||||||||
seq2  CTTCCTT--GCTGGAGAA  1149


seq1: chr11_42037293_42037836
seq2: B6Ng01-330J09.g_420_962 (reverse)

seq1  GCATAACAAGATCAAAGAAATTTCTAGTTTTGTTGAAAATAAATAA-CCA  49
      |||||||| |||| ||||||||||||| |||||||||||||||||| |||
seq2  GCATAACAGGATCCAAGAAATTTCTAG-TTTGTTGAAAATAAATAACCCA  49

seq1  TTAGGTTCTTTTAAATAATTCAGATGAAATTCCGTGATGGTCTGGGATTG  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTCTTTTAAATAATTCAGATGAAATTCCGTGATGGTCTGGGATTG  99

seq1  CTGCTGAACTTAAATTCTTTTTAAAATAAGAGACAAATCTGTATAATCTT  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGCTGAACTTAAATTC-TTTTAAAATAAGAGACAAATCTGTATAATCTT  148

seq1  AAGGTTTTTTTTTTTTGAGTAAAGAGAAACCACATGAAAATGTCTTTTAA  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGGTTTTTTTTTTTTGAGTAAAGAG-AACCACATGAAAATGTCTTTTAA  197

seq1  TTATTTTTATTTCACAAGCAGAATTTTTAAAATTCACTTTAAAAAAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATTTCACAAGCAGAATTTTTAAAATTCACTTTAAAAAAAAAT  247

seq1  -AAAAATAGATTCTTCTCTCATACAGTACATTCTGACCACAGTTTCTCTT  298
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAGATTCTTCTCTCATACAGTACATTCTGACCACAGTTTCTCTT  297

seq1  CTGTCTACTCTTCCAAGTTCCCCACTCTTACCCTCTCCTCTAAATCAATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTACTCTTCCAAGTTCCCCACTCTTACCCTCTCCTCTAAATCAATT  347

seq1  GCCCTTCCATCTCTCTTCAGGAATGTACAGGCCTCCAAGAGGCAATAGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCCATCTCTCTTCAGGAATGTACAGGCCTCCAAGAGGCAATAGTC  397

seq1  AAACAGAAGCAAACAAAATACAGTAAGACAAGGCAAAAGCCCTTCTATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAGCAAACAAAATACAGTAAGACAAGGCAAAAGCCCTTCTATGG  447

seq1  AGGTTGGAAAAAGCAAACCAGTAGGAGCAAAAGAGTTTCAAGTGCAGGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGAAAAAGCAAACCAGTAGGAGCAAAAGAGTTTCAAGTGCAGGCA  497

seq1  AAAGAGCCGGAGACACACCCTCTCCCACTGTTAGGATCCCCACAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCCGGAGACACACCCTCTCCCACTGTTAGGATCCCCACAAA  543


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