BAC Information

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BAC

Clone NameB6Ng01-330L02
Chromosome11 (Build37)
Map Location 94,220,166 - 94,361,724
singlet/doubletdoublet
Overlap geneAbcc3, Cacna1g, Spata20, Epn3
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40
Downstream geneMycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330L02.bB6Ng01-330L02.g
ACCGA117279GA117280
length364775
definitionB6Ng01-330L02.b B6Ng01-330L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,220,166 - 94,220,529)(94,360,953 - 94,361,724)
sequence
gaattcaacagcatgaggatggtgggggccagaacctcgtcgatgacgta
tatgtccttggagaaacggttgaggatgcggcccgagggcgtggtgtcaa
agaaggactgaggggaacgaatcttgttgtgcagcagagcttcgtgcagc
aggcgggcagcctggatcgcgccgaccaccatggtgaaagctgacagcat
gaccaggagccctgattgggagagacagagagcgagtcactcaccccagg
ggaggaagctgggacagacgggaagaaggagacaggggatggcccggtgg
agttatggaggttctgagacaggggtatggttttgtggcttggggagtgg
gcagaggagaggaa
gaattcatactgagctcccatatgtaagcatgtaagctatggaacgagct
tcagggcaggtaggatcctcccgggagttggaaaggcagagtcctcaggc
cccttggagaggctggggaagccagctgggagtaggtaaagaccagcccc
agggaatgttctgtcttctgctttaatgtcgtccggctaggagggttaag
gcttgggataggtattggagtggcctccattcccaccctcacctacttct
agcagaggaggtaggggaaaggttaactcacttgaagggtaggagtggat
gaactccagctctgtaaacctctggggtcaccggctgacaaacaggccag
cctcctcccctgaaggcaccgcccggcagacagcaggaaggggttaaaca
cgcccgcccgcccgtcatcctgtgtcctgttactgctgaggcagacctgc
ctggccagctgaacaactttcctcccgagagtgctggccggcaggagtcg
aggaggcagccgcgagagtctgagcggccacccgctggggggaccctgcg
gtccttccgagagagagctctgtgcctttcggtccaaggtagagctcccg
cgaccagggtttatggtggatggctctggggctgctcctgaagctgtgcc
atccccatacaagtcagagggtcactgcagaggctgcgggggctggggcg
agggagcccactctggaggtaagctccctccccgcgccgcggtggcgccc
ttgcatgaaggccggggttgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94220166_94220529
seq2: B6Ng01-330L02.b_44_407

seq1  GAATTCAACAGCATGAGGATGGTGGGGGCCAGAACCTCGTCGATGACGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGCATGAGGATGGTGGGGGCCAGAACCTCGTCGATGACGTA  50

seq1  TATGTCCTTGGAGAAACGGTTGAGGATGCGGCCCGAGGGCGTGGTGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCTTGGAGAAACGGTTGAGGATGCGGCCCGAGGGCGTGGTGTCAA  100

seq1  AGAAGGACTGAGGGGAACGAATCTTGTTGTGCAGCAGAGCTTCGTGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACTGAGGGGAACGAATCTTGTTGTGCAGCAGAGCTTCGTGCAGC  150

seq1  AGGCGGGCAGCCTGGATCGCGCCGACCACCATGGTGAAAGCTGACAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGGCAGCCTGGATCGCGCCGACCACCATGGTGAAAGCTGACAGCAT  200

seq1  GACCAGGAGCCCTGATTGGGAGAGACAGAGAGCGAGTCACTCACCCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGAGCCCTGATTGGGAGAGACAGAGAGCGAGTCACTCACCCCAGG  250

seq1  GGAGGAAGCTGGGACAGACGGGAAGAAGGAGACAGGGGATGGCCCGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGCTGGGACAGACGGGAAGAAGGAGACAGGGGATGGCCCGGTGG  300

seq1  AGTTATGGAGGTTCTGAGACAGGGGTATGGTTTTGTGGCTTGGGGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGGAGGTTCTGAGACAGGGGTATGGTTTTGTGGCTTGGGGAGTGG  350

seq1  GCAGAGGAGAGGAA  364
      ||||||||||||||
seq2  GCAGAGGAGAGGAA  364

seq1: chr11_94360953_94361724
seq2: B6Ng01-330L02.g_72_846 (reverse)

seq1  CCCCCCAACCCC-GCCTTCATGC-AGGGCGCCACCGCGGCGC-GGGAGGG  47
      |||||||||||| |||||||||| |||||||||||||||||| |||||||
seq2  CCCCCCAACCCCGGCCTTCATGCAAGGGCGCCACCGCGGCGCGGGGAGGG  50

seq1  AGCTTACCTCCAGAGTGGGCTCCCTCGCCCCAGCCCCCGCAGCCTCTGCA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACCTCCAGAGTGGGCTCCCTCGCCCCAGCCCCCGCAGCCTCTGCA  100

seq1  GTGACCCTCTGACTTGTATGGGGATGGCACAGCTTCAGGAGCAGCCCCAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTCTGACTTGTATGGGGATGGCACAGCTTCAGGAGCAGCCCCAG  150

seq1  AGCCATCCACCATAAACCCTGGTCGCGGGAGCTCTACCTTGGACCGAAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCCACCATAAACCCTGGTCGCGGGAGCTCTACCTTGGACCGAAAG  200

seq1  GCACAGAGCTCTCTCTCGGAAGGACCGCAGGGTCCCCCCAGCGGGTGGCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGCTCTCTCTCGGAAGGACCGCAGGGTCCCCCCAGCGGGTGGCC  250

seq1  GCTCAGACTCTCGCGGCTGCCTCCTCGACTCCTGCCGGCCAGCACTCTCG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGACTCTCGCGGCTGCCTCCTCGACTCCTGCCGGCCAGCACTCTCG  300

seq1  GGAGGAAAGTTGTTCAGCTGGCCAGGCAGGTCTGCCTCAGCAGTAACAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAGTTGTTCAGCTGGCCAGGCAGGTCTGCCTCAGCAGTAACAGG  350

seq1  ACACAGGATGACGGGCGGGCGGGCGTGTTTAACCCCTTCCTGCTGTCTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGATGACGGGCGGGCGGGCGTGTTTAACCCCTTCCTGCTGTCTGC  400

seq1  CGGGCGGTGCCTTCAGGGGAGGAGGCTGGCCTGTTTGTCAGCCGGTGACC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCGGTGCCTTCAGGGGAGGAGGCTGGCCTGTTTGTCAGCCGGTGACC  450

seq1  CCAGAGGTTTACAGAGCTGGAGTTCATCCACTCCTACCCTTCAAGTGAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTTTACAGAGCTGGAGTTCATCCACTCCTACCCTTCAAGTGAGT  500

seq1  TAACCTTTCCCCTACCTCCTCTGCTAGAAGTAGGTGAGGGTGGGAATGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTTCCCCTACCTCCTCTGCTAGAAGTAGGTGAGGGTGGGAATGGA  550

seq1  GGCCACTCCAATACCTATCCCAAGCCTTAACCCTCCTAGCCGGACGACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTCCAATACCTATCCCAAGCCTTAACCCTCCTAGCCGGACGACAT  600

seq1  TAAAGCAGAAGACAGAACATTCCCTGGGGCTGGTCTTTACCTACTCCCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGAAGACAGAACATTCCCTGGGGCTGGTCTTTACCTACTCCCAG  650

seq1  CTGGCTTCCCCAGCCTCTCCAAGGGGCCTGAGGACTCTGCCTTTCCAACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCCCCAGCCTCTCCAAGGGGCCTGAGGACTCTGCCTTTCCAACT  700

seq1  CCCGGGAGGATCCTACCTGCCCTGAAGCTCGTTCCATAGCTTACATGCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGAGGATCCTACCTGCCCTGAAGCTCGTTCCATAGCTTACATGCTT  750

seq1  ACATATGGGAGCTCAGTATGAATTC  772
      |||||||||||||||||||||||||
seq2  ACATATGGGAGCTCAGTATGAATTC  775