BAC Information

Click to search

BAC

Clone NameB6Ng01-331A03
Chromosome11 (Build37)
Map Location 56,319,420 - 56,320,561
singlet/doubletsinglet
Overlap genenone
Upstream geneGlra1, Nmur2, LOC100040816, LOC624168
Downstream geneGria1, LOC667878, 1810073G14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331A03.bB6Ng01-331A03.g
ACCGA117493GA117494
length1,148888
definitionB6Ng01-331A03.b B6Ng01-331A03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggtctttgagtaaagttcttggaacccaggaaagaatgatata
attatgaaagggagaaatcaaaacaatagcatcagaaacttaaggaagtt
cttggaaagcaggcagatatctagggagtagattctaaagttaagggaga
ccaggtggactgtaggcaaggaagaagtaagcttggttgtatatatttat
ttaaactatctcattttgtaatagttaagaaaactgaattgatgtagcaa
accccggagataggacagtaattatcaagttcttcctggaatcctaatgg
gagatacaagcagctcaaatctgtgatcatggggacgaaaagcaggtgag
agaaaggcattgctgagctattgtgcatatctgtggcagtattatttcaa
ggggtctttgggaaatgatttgtatttaacacctttctctacaaacatag
aatctggctcaggaaggtacatctgaccctccctcatctgaaatatataa
tatctggtccattgctgtagggtagatggagaacagagcaggaagggtct
gtgacttccaacctaagcaaagctgaggatgtattttcctggttttcaga
tttgatgtgatcagcacatcccaggaaagtattaagatgatggtacccac
actgtattgccagtattcctagtgttgcatggtcagcatatgtatggcat
atcctattccaacacatttatcatgggcaattttagactaagaaagatca
tttgaagacaaatcctgctgagggcattgacctgcttagcttctcatctt
atctctctcctctaggcctggcctttgagaatttctggttgataatacaa
agagtcaagatgaaaggaagaaaggccaggatcccaaacactttggagca
gttctggcctcccttttctcccttaactatcacacgttattctacacact
gcaggatttaaagttatctgtcatacacacgtccacaaggaaaatgaaac
gttataaactccagctagagctgcatgcatgagaaattattgattaaatt
atttgatgagtagcattggggaagaattcttcttacaaaatgttattagc
acaggagttttgtctctggagcagcttgttttcaggtacctaacccag

gaattctcacctgaggaataccgaatagctgagaaacacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaataatcctgagat
tccatctcacaccaatcagaatggctaagatgaaaaattcaggtgacagc
agatgctggagaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtacaaccagaggatcccgcaatacctctcctgagc
atatgtccagaagatttcccaactggtaagaaagacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagtacccagat
gcccctcaacaaaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcggctattaaaaggattgaatttatgaaattcctaggcaa
atggttggacctggagggcattatcctgagtgaggtaacctaatcacaaa
agaactcaaatgatatgtactcactgataagtggatagtagcccagaaac
gtagaataccgaagatataagttacaatttgcaaaacacatgaaactcaa
gaagaacgaagaccaaattgtggacactgccatttcttagaattgggaac
aaaacacccatggaaggagttacagagacaaagtttggagctgagacaaa
agatggaccatctagagactgccatatccagggatccatcccatatttcc
aattttctgaggaaccgccaaattgatttccaaggttgttgtaccagctt
gcaattctgcaagtagtgtggaagatgtttttcttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_56319420_56320561
seq2: B6Ng01-331A03.b_46_1193 (reverse)

seq1  CTGGGGTAGGTACCTGAAAAC-AGCTGCT-CAGAGACAAAACT-CTGTGC  47
      ||||| ||||||||||||||| ||||||| ||||||||||||| ||||||
seq2  CTGGGTTAGGTACCTGAAAACAAGCTGCTCCAGAGACAAAACTCCTGTGC  50

seq1  TAATAACATTTTGT----AGAGATCTT-CCCAATGCTACTCATC-AATAA  91
      ||||||||||||||    |||  |||| |||||||||||||||| |||||
seq2  TAATAACATTTTGTAAGAAGAATTCTTCCCCAATGCTACTCATCAAATAA  100

seq1  TTTAATTCAATAATTTCTCATGCATGCAGCTCCTAGCTGGAGTTTTATAA  141
      ||||| ||||||||||||||||||||||||| |||||||||| |||||||
seq2  TTTAA-TCAATAATTTCTCATGCATGCAGCT-CTAGCTGGAG-TTTATAA  147

seq1  CGTTTCATTTTCCTTGTGGACGTGTGTATGACAGATAACTTTAAATCCTG  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCATTTTCCTTGTGGACGTGTGTATGACAGATAACTTTAAATCCTG  197

seq1  CAGTGTGTAGAATAACGTGTGATAGTTAAGGGAGAAAAGGGAGGCCAGAA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTAGAATAACGTGTGATAGTTAAGGGAGAAAAGGGAGGCCAGAA  247

seq1  CCTGCTCCAAAGTGTTTGGGATCCTGGCCCTTCTTCC-TTCATCTTGACT  290
       |||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  -CTGCTCCAAAGTGTTTGGGATCCTGGCCTTTCTTCCTTTCATCTTGACT  296

seq1  CTTTGTATTATCAACCAGAAATTCTCAAAGGCCAGGCCTAGAGGAGAGAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATTATCAACCAGAAATTCTCAAAGGCCAGGCCTAGAGGAGAGAG  346

seq1  ATAAGATGAGAAGCTAAGCAGGTCAATGCCCTCAGCAGGATTTGTCTTCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGAGAAGCTAAGCAGGTCAATGCCCTCAGCAGGATTTGTCTTCA  396

seq1  AATGATCTTTCTTAGTCTAAAATTGCCCATGATAAATGTGTTGGAATAGG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTTTCTTAGTCTAAAATTGCCCATGATAAATGTGTTGGAATAGG  446

seq1  ATATGCCATACATATGCTGACCATGCAACACTAGGAATACTGGCAATACA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCATACATATGCTGACCATGCAACACTAGGAATACTGGCAATACA  496

seq1  GTGTGGGTACCATCATCTTAATACTTTCCTGGGATGTGCTGATCACATCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTACCATCATCTTAATACTTTCCTGGGATGTGCTGATCACATCA  546

seq1  AATCTGAAAACCAGGAAAATACATCCTCAGCTTTGCTTAGGTTGGAAGTC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAAAACCAGGAAAATACATCCTCAGCTTTGCTTAGGTTGGAAGTC  596

seq1  ACAGACCCTTCCTGCTCTGTTCTCCATCTACCCTACAGCAATGGACCAGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCCTTCCTGCTCTGTTCTCCATCTACCCTACAGCAATGGACCAGA  646

seq1  TATTATATATTTCAGATGAGGGAGGGTCAGATGTACCTTCCTGAGCCAGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATATTTCAGATGAGGGAGGGTCAGATGTACCTTCCTGAGCCAGA  696

seq1  TTCTATGTTTGTAGAGAAAGGTGTTAAATACAAATCATTTCCCAAAGACC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTTTGTAGAGAAAGGTGTTAAATACAAATCATTTCCCAAAGACC  746

seq1  CCTTGAAATAATACTGCCACAGATATGCACAATAGCTCAGCAATGCCTTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAATAATACTGCCACAGATATGCACAATAGCTCAGCAATGCCTTT  796

seq1  CTCTCACCTGCTTTTCGTCCCCATGATCACAGATTTGAGCTGCTTGTATC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCTGCTTTTCGTCCCCATGATCACAGATTTGAGCTGCTTGTATC  846

seq1  TCCCATTAGGATTCCAGGAAGAACTTGATAATTACTGTCCTATCTCCGGG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTAGGATTCCAGGAAGAACTTGATAATTACTGTCCTATCTCCGGG  896

seq1  GTTTGCTACATCAATTCAGTTTTCTTAACTATTACAAAATGAGATAGTTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTACATCAATTCAGTTTTCTTAACTATTACAAAATGAGATAGTTT  946

seq1  AAATAAATATATACAACCAAGCTTACTTCTTCCTTGCCTACAGTCCACCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATATATACAACCAAGCTTACTTCTTCCTTGCCTACAGTCCACCT  996

seq1  GGTCTCCCTTAACTTTAGAATCTACTCCCTAGATATCTGCCTGCTTTCCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCTTAACTTTAGAATCTACTCCCTAGATATCTGCCTGCTTTCCA  1046

seq1  AGAACTTCCTTAAGTTTCTGATGCTATTGTTTTGATTTCTCCCTTTCATA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCCTTAAGTTTCTGATGCTATTGTTTTGATTTCTCCCTTTCATA  1096

seq1  ATTATATCATTCTTTCCTGGGTTCCAAGAACTTTACTCAAAGACCTGAAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCATTCTTTCCTGGGTTCCAAGAACTTTACTCAAAGACCTGAAT  1146

seq1  TC  1142
      ||
seq2  TC  1148


| Home | SequenceCutter | Blast | Download |