BAC Information

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BAC

Clone NameB6Ng01-331B09
Chromosome11 (Build37)11 (Build37)
Map Location 40,306,346 - 40,307,44588,858,646 - 88,858,964
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039241
Downstream geneLOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331B09.bB6Ng01-331B09.g
ACCGA117551GA117552
length1,1351,019
definitionB6Ng01-331B09.b B6Ng01-331B09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,306,346 - 40,307,445)(88,858,646 - 88,858,964)
sequence
ggaattcagtagatagcaaatgattgtgttcacttttctcatgactctga
tcccagggtttctgtaattccaaggctagcattcactgctactgctttct
gaatgcatttgtcaaagattaaatggtcacttaaattaaaagggttctca
tgtaaaaactaatattaaaaatctatatcacttgatctgttctataagac
aaataaataggaggtgtgatagcatctgtaagtccatatatgagggtttt
tttccattgattaatcgatttattcactttacatcctgacaatcaccccc
tcacacagcccttcccccacatcctcctctaagaactccctcccaccacc
accccaccaccaccccaccaccaccccctggtacctaggtatcaacctac
cctggcactttaagtcaatgcaggactagggaggtaggtcctttccaacg
gaagcagcccagttaggggaactagatccacaggcaggcatcagagtgag
ggacagttccactccagttgttggaggacccaaatgaagaccaacctgca
catctgtttcatatgagctaggtccagcccatgatcattctttggttggt
ggttcagtctgtgggagcccccaagggtccaggttcgctgattctgctgg
tcttcttgtggaacccatgtatgagtttttaagctaaggactaaactaat
tgctgaggtattcataatatctggttatggcaacattttgtgagcgcaaa
ttctttcttaaaccttttcttccttgctgaaggcacatgcaaagtcccca
actttgtgcataagcatcaaggtgatattagaatcagacaaccttgtgct
ttctgtgatctcatctcaaatcagttccaagacgatggattgacattgga
cgtccttcatttctcatgggtcttacttgcttttctttgctccaaaattt
catatttcccaagtgggttaaaagtaaagccttgttctattgtaacatca
attctttccttttcagaaatttaacctttttgcatccatacaacctaaat
ggcaaatggggtcaacttgacttccctttttgttttctctagaacatggg
cttctcctggggagctctcggaacctgtaaatcag

gaattcagtcatctgaaggcttctgccttcagagtactggaatcaaaggt
gtacactaccatacccagcccccccccccgtttttgtgatatttatttat
ttatttatttattgttgtatcttttttgaagagagagaaggctcagtggg
taggacggatctgagaggagtaatgagaagaggaaatatgatcaaataat
aaaaaatttttaaataaattaaaacagaattaagggggaaagatttgaac
atttagtgatgtctcttaaactctttgccttggttgtgttttgaagccag
caatgtcatccagaacttccaatgacaccaattcttttagggaaatggct
catttcagggacagaaataaaaaataaacatagactaaattgatacaaga
aaggtatgcttggaaaacataatatcaagaggactcaggaactaatttga
aaaaaaaaaatcccccaagggccaaaccttagggcaattttagtaaaaag
taatgatacttttagctcatagaattataagtgaatcttgagatcatggg
acagatcctacttcctccagaattccaacacagaagtagcaattgcagag
gagggaacagaagcttgcttttgtgctaaccacagtaacgcttgctgcag
ggagtcatcactgaggatactagaagtagtgggtgaaatcacatatttat
atcatatgtagttgtcactcatcaaaaacaatcaatatttacaccaggaa
aaagagtaaccctgcagtgaagaagccttacggtggcatctttctaagta
gatcagagttagcgtgaccagtcatgagacatactgacacacacctcttg
aaatgatgagataagaaagagacatagtggggctggagaggtggctcagc
agttcagaacactgactgttcttccagaggtcctgagttcaattcccagc
aaccacatgggtggctcacaaccatctgtaatgggatcagatgccctctt
ctggtgtgtctgaatacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40306346_40307445
seq2: B6Ng01-331B09.b_49_1182

seq1  GAATTCAGTAGATAGCAAATGATTGTGTTCACTTTTCTCATGACTCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGATAGCAAATGATTGTGTTCACTTTTCTCATGACTCTGAT  50

seq1  CCCAGGGTTTCTGTAATTCCAAGGCTAGCATTCACTGCTACTGCTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGTTTCTGTAATTCCAAGGCTAGCATTCACTGCTACTGCTTTCTG  100

seq1  AATGCATTTGTCAAAGATTAAATGGTCACTTAAATTAAAAGGGTTCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTTGTCAAAGATTAAATGGTCACTTAAATTAAAAGGGTTCTCAT  150

seq1  GTAAAAACTAATATTAAAAATCTATATCACTTGATCTGTTCTATAAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAACTAATATTAAAAATCTATATCACTTGATCTGTTCTATAAGACA  200

seq1  AATAAATAGGAGGTGTGATAGCATCTGTAAGTCCATATATGAGGGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAGGAGGTGTGATAGCATCTGTAAGTCCATATATGAGGGTTTTT  250

seq1  TTCCATTGATTAATCGATTTATTCACTTTACATCCTGACAATCACCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGATTAATCGATTTATTCACTTTACATCCTGACAATCACCCCCT  300

seq1  CACACAGCCCTTCCCCCACATCCTCCTCTAAGAACTCCCTCCCACCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCCCTTCCCCCACATCCTCCTCTAAGAACTCCCTCCCACCACCA  350

seq1  CCCCACCACCACCCCACCACCACCCCCTGGTACCTAGGTATCAACCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCACCACCCCACCACCACCCCCTGGTACCTAGGTATCAACCTACC  400

seq1  CTGGCACTTTAAGTCAATGCAGGACTAGGGAGGTAGGTCCTTTCCAACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACTTTAAGTCAATGCAGGACTAGGGAGGTAGGTCCTTTCCAACGG  450

seq1  AAGCAGCCCAGTTAGGGGAACTAGATCCACAGGCAGGCATCAGAGTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCCAGTTAGGGGAACTAGATCCACAGGCAGGCATCAGAGTGAGG  500

seq1  GACAGTTCCACTCCAGTTGTTGGAGGACCCAAATGAAGACCAACCTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTCCACTCCAGTTGTTGGAGGACCCAAATGAAGACCAACCTGCAC  550

seq1  ATCTGTTTCATATGAGCTAGGTCCAGCCCATGATCATTCTTTGGTTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTTCATATGAGCTAGGTCCAGCCCATGATCATTCTTTGGTTGGTG  600

seq1  GTTCAGTCTGTGGGAGCCCCCAAGGGTCCAGGTTCGCTGATTCTGCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTCTGTGGGAGCCCCCAAGGGTCCAGGTTCGCTGATTCTGCTGGT  650

seq1  CTTCTTGTGGAACCCATGTATGAG-TTTTAAGCTAAGGACTAAACTAATT  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTCTTGTGGAACCCATGTATGAGTTTTTAAGCTAAGGACTAAACTAATT  700

seq1  GCTGAGGTATTCATAATATCTGGTTATGGCAACATTTTGTGAGCGCAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGTATTCATAATATCTGGTTATGGCAACATTTTGTGAGCGCAAAT  750

seq1  TCTTTCTTAAACCTTTTCTTCC-TGCTGAAGGCACATGCAAAGTCCCCAA  798
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTTTCTTAAACCTTTTCTTCCTTGCTGAAGGCACATGCAAAGTCCCCAA  800

seq1  CTTTGTGCATAAGCATCAAGGTGATATTAGAATCAGACAACCTTGTGC-T  847
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTTGTGCATAAGCATCAAGGTGATATTAGAATCAGACAACCTTGTGCTT  850

seq1  TCTGTGATCTCATCTC-AATCAGTTCCAAGACGATGGA-TGACATT-GAC  894
      |||||||||||||||| ||||||||||||||||||||| ||||||| |||
seq2  TCTGTGATCTCATCTCAAATCAGTTCCAAGACGATGGATTGACATTGGAC  900

seq1  GTCCTTCA-TTCTCATGGGTCTTACTTGC-TTTCTTTGCTCC-AAATTTC  941
      |||||||| |||||||||||||||||||| |||||||||||| |||||||
seq2  GTCCTTCATTTCTCATGGGTCTTACTTGCTTTTCTTTGCTCCAAAATTTC  950

seq1  ATATT--CCAAGT-GGTTAAAAGTAAAGCCT--GTCTATTGTAACATC-A  985
      |||||  |||||| |||||||||||||||||   |||||||||||||| |
seq2  ATATTTCCCAAGTGGGTTAAAAGTAAAGCCTTGTTCTATTGTAACATCAA  1000

seq1  TTCTT--CCTTTCAGAAA-TTAAC--TTTTGCATCCATACA--CTTAATG  1028
      |||||  | ||||||||| |||||  |||||||||||||||  || ||||
seq2  TTCTTTCCTTTTCAGAAATTTAACCTTTTTGCATCCATACAACCTAAATG  1050

seq1  GCAA--TGGGTCAAC-TGACT--CCTTTTTGTTTT-TCTAG-ACAT-GGT  1070
      ||||   |||||||| |||||  |||||||||||| ||||| |||| || 
seq2  GCAAATGGGGTCAACTTGACTTCCCTTTTTGTTTTCTCTAGAACATGGGC  1100

seq1  TTCT-CTGTGTAGCTCT---GACCTGTAAATCAG  1100
      |||| ||| | ||||||    |||||||||||||
seq2  TTCTCCTGGGGAGCTCTCGGAACCTGTAAATCAG  1134


seq1: chr11_88858646_88858964
seq2: B6Ng01-331B09.g_512_1026

seq1  ------------------------------------------TTTGAAAA  8
                                                ||| |  |
seq2  TTTGAAAAAAAAAAATCCCCCAAGGGCCAAACCTTAGGGCAATTTTAGTA  50

seq1  AAAAAAATTGA-------AGCT--------------TCAATATTGTG---  34
      ||||  | |||       ||||              | ||| ||| |   
seq2  AAAAGTAATGATACTTTTAGCTCATAGAATTATAAGTGAATCTTGAGATC  100

seq1  -TGTGA--------------------------------AGGGGGC---TG  48
       || ||                                | |  ||   ||
seq2  ATGGGACAGATCCTACTTCCTCCAGAATTCCAACACAGAAGTAGCAATTG  150

seq1  TCGA-GATGGCTCAG-----TGGTT-------------AATAGCGCCAAC  79
        || || ||  |||     || ||             | || |||   |
seq2  CAGAGGAGGGAACAGAAGCTTGCTTTTGTGCTAACCACAGTAACGCTTGC  200

seq1  TGC------TCTT--CTGAAGGTCCCA-----AGT---TCAAATCCCA--  111
      |||      || |  |||| | | | |     |||   | ||||| ||  
seq2  TGCAGGGAGTCATCACTGAGGATACTAGAAGTAGTGGGTGAAATCACATA  250

seq1  --GCAACCACATG-----GTGGCTC----ACAACTATCCGTAATGAGATC  150
           | || |||     ||  |||    | ||| |||  || | | | |
seq2  TTTATATCATATGTAGTTGTCACTCATCAAAAACAATCAATATTTACACC  300

seq1  TGG---------CGCCCT-------------CTTCTGGAG-----TGTCT  173
       ||           ||||             |||  || |     | |||
seq2  AGGAAAAAGAGTAACCCTGCAGTGAAGAAGCCTTACGGTGGCATCTTTCT  350

seq1  -----GAGGACAGCTACAGTGTACTTACAT-ATA-ATAAATAAATAAATC  216
           ||  | || ||  |||  |   ||| | | |||   | | | | |
seq2  AAGTAGATCAGAGTTAGCGTGACCAGTCATGAGACATACTGACACACACC  400

seq1  TTTTTAAA---------AAAATTGTG----TGTGAAGGCTGGAGAGATGA  253
      | || |||         || |  | |     |||  |||||||||| || 
seq2  TCTTGAAATGATGAGATAAGAAAGAGACATAGTG-GGGCTGGAGAGGTGG  449

seq1  CTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATT  303
      |||||||||| ||| ||||||||| |||||||||||||||||||||||||
seq2  CTCAGCAGTTCAGAACACTGACTGTTCTTCCAGAGGTCCTGAGTTCAATT  499

seq1  CCCAGCAACCACATGG  319
      ||||||||||||||||
seq2  CCCAGCAACCACATGG  515


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