BAC Information

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BAC

Clone NameB6Ng01-331J12
Chromosome11 (Build37)
Map Location 110,950,477 - 111,087,135
singlet/doubletdoublet
Overlap genenone
Upstream geneAbca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523, Kcnj16, Kcnj2
Downstream geneLOC667003, LOC100041539, LOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331J12.bB6Ng01-331J12.g
ACCGA117917GA117918
length836709
definitionB6Ng01-331J12.b B6Ng01-331J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,086,303 - 111,087,135)(110,950,477 - 110,951,185)
sequence
gaattcctttattttacttgatcagtaagaatgaggtaagaaattacagc
aaaaataaactaattatgtaaacaaaatacatttaaatatatttgcagca
gaaatgcccctcacacaaaggccactggcccctttaccactgtcccagtg
tgggattttaatgaatgctgtgaggaactatttactctaagccagtgaac
tcaaccttgaaattcagcttcaagtttgtagcacctggtagtgacttcag
tttaagcctggtcacgttcatggcatcgaactaagggagggtataactca
gaaagattctccaagattacccttgagatgaaaaactaagtaaatcttta
taaatatgactactgaggagataaaaatacttcaagagtcacacagctcc
agactcatcaattggcctgagtatactcttaactgacttactttaaaatt
tggggggtgggggtggtcaaaaagtgaatctcaatatgaaagtatgacaa
agattgcttgtacaatcttcttctcagatatgtggtggaagacttgcaag
ataatgagacctctaggtacctaaggaggacccaatccagccaagagcca
aacatacttcattctaaaaaagtccatgaaaacaaagcctactaagatct
taatcaatatggaaaggcatttttccctaaacctcataagaagttctgaa
tcttaattgagtgtggctaggcttttaatgtaaaaatactgtaagataaa
tttcgctgctttaagccactgcacaacgtgtatttcttgatgtaatcgtc
tagatctattaccaaaatgcatggcggaaaaaggtc
gaattctaaggtcagctatctctagctcttggcattgtctttgtctctct
tcagaggggtggagtttatcgtcttcctcatttcctaagtgagcagagca
gacagtattgcttttatcagtgagataaattgaaataaaaatgctctcag
tatttatagggcaatcaaatacttacaaaagaaaatgagggtatttgtca
gagacattaaaaagtgagggaattagatttaaatcatatacacaatcgtt
tgcttaagtcatgacatatttgtttattcattttaaaacaggccaggaat
tttttccgtgttttttttttttttttgtttgaaaaggagtagaccctttg
ctcaacttcttgagatgataggcatgcctatctgactttctttttcaatt
atttttttagaaaccaaattaaatgaacaaaggtgaagataagtggttta
agtattgttttaaattctttatgtagcacctttgtgatacaaaggtgaaa
gataatgtttataagccggattttttattattattaaaagaagggcaggt
gtgatggtactcatctgtacacccaagcttccaaaactaggggggaagag
tcaggagaatcaagtgtttaaggccggactccacagacagtatcagagtt
ctcagcattctagtgcaataaagagacaagagtgtggacatgggggtggg
gagagattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_111086303_111087135
seq2: B6Ng01-331J12.b_47_882 (reverse)

seq1  GACC-TTTTCCGCCATGCATTTTGGTAATGATTCTAGACGATTACAACAA  49
      |||| ||||||||||||||||||||||||   |||||||||||||| |||
seq2  GACCTTTTTCCGCCATGCATTTTGGTAATAGATCTAGACGATTACATCAA  50

seq1  AGAACACACGTTGTGCAGTGGCTTAAAGCAGCGAAATTTATCTTACAGTA  99
        || |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACACGTTGTGCAGTGGCTTAAAGCAGCGAAATTTATCTTACAGTA  100

seq1  TTTTTACATT-AAAGCCTAGCCACACTCAATTAAGATTCAGAACTTCTTA  148
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACATTAAAAGCCTAGCCACACTCAATTAAGATTCAGAACTTCTTA  150

seq1  TGAGGTTTAGGG-AAAATGCCTTTCCATATTGATTAAGATCTTAGTAGGC  197
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTAGGGAAAAATGCCTTTCCATATTGATTAAGATCTTAGTAGGC  200

seq1  TTTGTTTTCATGGACTTTTTTAGAATGAAGTATGTTTGGCTCTTGGCTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCATGGACTTTTTTAGAATGAAGTATGTTTGGCTCTTGGCTGG  250

seq1  ATTGGGTCCTCCTTAGGTACCTAGAGGTCTCATTATCTTGCAAGTCTTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTCCTCCTTAGGTACCTAGAGGTCTCATTATCTTGCAAGTCTTCC  300

seq1  ACCACATATCTGAGAAGAAGATTGTACAAGCAATCTTTGTCATACTTTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATATCTGAGAAGAAGATTGTACAAGCAATCTTTGTCATACTTTCA  350

seq1  TATTGAGATTCACTTTTTGACCACCCCCACCCCCCAAATTTTAAAGTAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGATTCACTTTTTGACCACCCCCACCCCCCAAATTTTAAAGTAAG  400

seq1  TCAGTTAAGAGTATACTCAGGCCAATTGATGAGTCTGGAGCTGTGTGACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAAGAGTATACTCAGGCCAATTGATGAGTCTGGAGCTGTGTGACT  450

seq1  CTTGAAGTATTTTTATCTCCTCAGTAGTCATATTTATAAAGATTTACTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGTATTTTTATCTCCTCAGTAGTCATATTTATAAAGATTTACTTA  500

seq1  GTTTTTCATCTCAAGGGTAATCTTGGAGAATCTTTCTGAGTTATACCCTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCATCTCAAGGGTAATCTTGGAGAATCTTTCTGAGTTATACCCTC  550

seq1  CCTTAGTTCGATGCCATGAACGTGACCAGGCTTAAACTGAAGTCACTACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTTCGATGCCATGAACGTGACCAGGCTTAAACTGAAGTCACTACC  600

seq1  AGGTGCTACAAACTTGAAGCTGAATTTCAAGGTTGAGTTCACTGGCTTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTACAAACTTGAAGCTGAATTTCAAGGTTGAGTTCACTGGCTTAG  650

seq1  AGTAAATAGTTCCTCACAGCATTCATTAAAATCCCACACTGGGACAGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAGTTCCTCACAGCATTCATTAAAATCCCACACTGGGACAGTGG  700

seq1  TAAAGGGGCCAGTGGCCTTTGTGTGAGGGGCATTTCTGCTGCAAATATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGGCCAGTGGCCTTTGTGTGAGGGGCATTTCTGCTGCAAATATAT  750

seq1  TTAAATGTATTTTGTTTACATAATTAGTTTATTTTTGCTGTAATTTCTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTATTTTGTTTACATAATTAGTTTATTTTTGCTGTAATTTCTTA  800

seq1  CCTCATTCTTACTGATCAAGTAAAATAAAGGAATTC  833
      ||||||||||||||||||||||||||||||||||||
seq2  CCTCATTCTTACTGATCAAGTAAAATAAAGGAATTC  836

seq1: chr11_110950477_110951185
seq2: B6Ng01-331J12.g_68_776

seq1  GAATTCTAAGGTCAGCTATCTCTAGCTCTTGGCATTGTCTTTGTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGTCAGCTATCTCTAGCTCTTGGCATTGTCTTTGTCTCTCT  50

seq1  TCAGAGGGGTGGAGTTTATCGTCTTCCTCATTTCCTAAGTGAGCAGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGGTGGAGTTTATCGTCTTCCTCATTTCCTAAGTGAGCAGAGCA  100

seq1  GACAGTATTGCTTTTATCAGTGAGATAAATTGAAATAAAAATGCTCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTATTGCTTTTATCAGTGAGATAAATTGAAATAAAAATGCTCTCAG  150

seq1  TATTTATAGGGCAATCAAATACTTACAAAAGAAAATGAGGGTATTTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAGGGCAATCAAATACTTACAAAAGAAAATGAGGGTATTTGTCA  200

seq1  GAGACATTAAAAAGTGAGGGAATTAGATTTAAATCATATACACAATCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTAAAAAGTGAGGGAATTAGATTTAAATCATATACACAATCGTT  250

seq1  TGCTTAAGTCATGACATATTTGTTTATTCATTTTAAAACAGGCCAGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGTCATGACATATTTGTTTATTCATTTTAAAACAGGCCAGGAAT  300

seq1  TTTTTCCGTGTTTTTTTTTTTTTTTTGTTTGAAAAGGAGTAGACCCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCGTGTTTTTTTTTTTTTTTTGTTTGAAAAGGAGTAGACCCTTTG  350

seq1  CTCAACTTCTTGAGATGATAGGCATGCCTATCTGACTTTCTTTTTCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTTCTTGAGATGATAGGCATGCCTATCTGACTTTCTTTTTCAATT  400

seq1  ATTTTTTTAGAAACCAAATTAAATGAACAAAGGTGAAGATAAGTGGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTAGAAACCAAATTAAATGAACAAAGGTGAAGATAAGTGGTTTA  450

seq1  AGTATTGTTTTAAATTCTTTATGTAGCACCTTTGTGATACAAAGGTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGTTTTAAATTCTTTATGTAGCACCTTTGTGATACAAAGGTGAAA  500

seq1  GATAATGTTTATAAGCCGGATTTTTTATTATTATTAAAAGAAGGGCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGTTTATAAGCCGGATTTTTTATTATTATTAAAAGAAGGGCAGGT  550

seq1  GTGATGGTACTCATCTGTACACCCAAGCTTCCAAAACTAGGGGGGAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGTACTCATCTGTACACCCAAGCTTCCAAAACTAGGGGGGAAGAG  600

seq1  TCAGGAGAATCAAGTGTTTAAGGCCGGACTCCACAGACAGTATCAGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAATCAAGTGTTTAAGGCCGGACTCCACAGACAGTATCAGAGTT  650

seq1  CTCAGCATTCTAGTGCAATAAAGAGACAAGAGTGTGGACATGGGGGTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATTCTAGTGCAATAAAGAGACAAGAGTGTGGACATGGGGGTGGG  700

seq1  GAGAGATTT  709
      |||||||||
seq2  GAGAGATTT  709