BAC Information

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BAC

Clone NameB6Ng01-332I03
Chromosome11 (Build37)
Map Location 24,711,412 - 24,808,359
singlet/doubletdoublet
Overlap genenone
Upstream genePapolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream geneLOC100042282, 5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332I03.bB6Ng01-332I03.g
ACCGA118589GA118590
length1,1781,127
definitionB6Ng01-332I03.b B6Ng01-332I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,807,173 - 24,808,359)(24,711,412 - 24,712,123)
sequence
gaattccaaaccacagcttcatgcaggggatagctgaggcctcccatcat
tctgggactcctacagttcgaacaggcttaggagtcctaaagtgtttggc
ctcgcacacgttctacttggaagcactaaaggttttcaaaataaatcaaa
caagcttaataacctttattgcggattgtttctggagacaaatctttgca
aaattcaccacatgcctcaaaacctgcagaagggcaagagtccacgtcat
aggcttgctggggagcagcccattaacgcatagggaagacatcccacttc
tcttatgtaaactggaaagtagaggtgcttccctaaactcggccaaacaa
gggaaatagtttgaagacgacaggaagtatgtgttagcaaaattttaaca
atcaactaacggaacaatgtatagaaatttgaatgagcaatttaaactga
gatttttaagaaactatacagatactagaagtcccagatgtgctgcccag
gcacaacatggaacacagacaggcagtatccctacaaatactgcagagct
gggtctttctcttcagtacttcaggatggcattcttttccttaccatgat
gcccttttgatttgcaatttaaattatggtatctgtactgcatttatcac
acctatcgcttatccacatataaatctgttttggagctaggcactaagtt
agaaagatttgttataaatgtcttattttaatattttatgcatgaagcat
aatttgattcagagtgctatttgtctaaaatacataacaatgtgtgcggt
tacattgcttctgttcttcaggaaatatgtttaaggcaaaacaattaact
catctgtgtctaagtcgcagcgcctgctcatggtttgaatcattttaata
tacattcatctttcctgccctcttctgtagaattgtcttatgaacgaagg
gatgggcatctcacttttccatatctgataggctatctccctgaattttc
cctttatcagccttccacagtaaagtatacttgtttaagaaagtgtgagc
tggtagaagtgcagtaggacccatgacccccagctagcagccctacaaat
gaggaaaacagcaatatttattgagtgttttataaatcaagactgttctt
gactcacctgtcctctcttggcctgagt

gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaaaagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctctcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggccccaaacagaatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgcagcctcagaagctctgtggctcttgccgggaaggtggc
tggttgtctggagctgaggatggtgccgccccagaatctctgcgactctc
tcgcccgtcccagaaacggctggcactctgtattccacacggtcacccgt
gcagcctgccctccgcggagtcccggagccaagaaggctcccgccggcgc
ctgtgccacaaacctctcaggccaggcagacccccgtgctctcaccagga
aggtggccggctgtctggagctgaagatggcgccgcccagaagctctgcg
actctctcgcccgtcccagaaacagctggcactctgtattccacacggtc
acccgtgcagcctgccctccgcggagtcccggagccaagaaggctcccgc
cggcgcctgtgccacaaacctctcagccaggtagacccccgtgctcttca
ccgggaaggtggcccggctgtctggacacatggaactatttttaaactta
ttaagagaagtgaaatgcttcagcttcagagctcatgtagaaagagaggc
ctgcagtcatttctcgagttatactccacttttgattcaaaggccagagg
gctggaagtgtacataatagaatctgcttcaatctgctcacgggaacatc
tagttgggggtgtgctgagacgtgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_24807173_24808359
seq2: B6Ng01-332I03.b_47_1224 (reverse)

seq1  ACTCAGGCCAAGAGAG--CAGTTGAAGGCTCAGACAGTGCCTTGATTTAA  48
      ||||||||||||||||  ||| || || |    |||||  |||||||| |
seq2  ACTCAGGCCAAGAGAGGACAGGTG-AGTCAAGAACAGT--CTTGATTT-A  46

seq1  TAAAACACTCAATAAATATTTGCTGTTTTCCTTCATTTTGTAGGGCTGCT  98
      |||||||||||||||||| |||||||||||| ||| ||||||||||||| 
seq2  TAAAACACTCAATAAATA-TTGCTGTTTTCC-TCA-TTTGTAGGGCTGC-  92

seq1  TAGCTGTGTGTCATGGGTCCTTACTTGCACTTCTACCAGCCTCACACTTT  148
      |||||| | ||||||||||| ||| |||||||||||||| ||||||||||
seq2  TAGCTGGGGGTCATGGGTCC-TAC-TGCACTTCTACCAG-CTCACACTTT  139

seq1  C-TAAAC-AGTATACTTTACTGTGGAAGGCTGATTAAAGGGAAAATTCAG  196
      | ||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTAAACAAGTATACTTTACTGTGGAAGGCTGA-TAAAGGGAAAATTCAG  188

seq1  GGAGATAGCCTATTCAGATATGGAAAAGTGAGATGCCCATCCCTTCGTTC  246
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGAGATAGCCTA-TCAGATATGGAAAAGTGAGATGCCCATCCCTTCGTTC  237

seq1  ATAAGACAATTCTACAGAAGAGGGCAGGAAAGATGAATGTATATTAAAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAATTCTACAGAAGAGGGCAGGAAAGATGAATGTATATTAAAAT  287

seq1  GATTCAAACCATGAGCAGGCGCTGCGACTTAGACACAGATGAGTTAATTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAACCATGAGCAGGCGCTGCGACTTAGACACAGATGAGTTAATTG  337

seq1  TTTTGCCTTAAACATATTTCCTGAAGAACAGAAGCAATGTAACCGCACAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTTAAACATATTTCCTGAAGAACAGAAGCAATGTAACCGCACAC  387

seq1  ATTGTTATGTATTTTAGACAAATAGCACTCTGAATCAAATTATGCTTCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATGTATTTTAGACAAATAGCACTCTGAATCAAATTATGCTTCAT  437

seq1  GCATAAAATATTAAAATAAGACATTTATAACAAATCTTTCTAACTTAGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAATATTAAAATAAGACATTTATAACAAATCTTTCTAACTTAGTG  487

seq1  CCTAGCTCCAAAACAGATTTATATGTGGATAAGCGATAGGTGTGATAAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTCCAAAACAGATTTATATGTGGATAAGCGATAGGTGTGATAAAT  537

seq1  GCAGTACAGATACCATAATTTAAATTGCAAATCAAAAGGGCATCATGGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACAGATACCATAATTTAAATTGCAAATCAAAAGGGCATCATGGTA  587

seq1  AGGAAAAGAATGCCATCCTGAAGTACTGAAGAGAAAGACCCAGCTCTGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAATGCCATCCTGAAGTACTGAAGAGAAAGACCCAGCTCTGCA  637

seq1  GTATTTGTAGGGATACTGCCTGTCTGTGTTCCATGTTGTGCCTGGGCAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTAGGGATACTGCCTGTCTGTGTTCCATGTTGTGCCTGGGCAGC  687

seq1  ACATCTGGGACTTCTAGTATCTGTATAGTTTCTTAAAAATCTCAGTTTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGGACTTCTAGTATCTGTATAGTTTCTTAAAAATCTCAGTTTAA  737

seq1  ATTGCTCATTCAAATTTCTATACATTGTTCCGTTAGTTGATTGTTAAAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCATTCAAATTTCTATACATTGTTCCGTTAGTTGATTGTTAAAAT  787

seq1  TTTGCTAACACATACTTCCTGTCGTCTTCAAACTATTTCCCTTGTTTGGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAACACATACTTCCTGTCGTCTTCAAACTATTTCCCTTGTTTGGC  837

seq1  CGAGTTTAGGGAAGCACCTCTACTTTCCAGTTTACATAAGAGAAGTGGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTAGGGAAGCACCTCTACTTTCCAGTTTACATAAGAGAAGTGGGA  887

seq1  TGTCTTCCCTATGCGTTAATGGGCTGCTCCCCAGCAAGCCTATGACGTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCCTATGCGTTAATGGGCTGCTCCCCAGCAAGCCTATGACGTGG  937

seq1  ACTCTTGCCCTTCTGCAGGTTTTGAGGCATGTGGTGAATTTTGCAAAGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCCCTTCTGCAGGTTTTGAGGCATGTGGTGAATTTTGCAAAGAT  987

seq1  TTGTCTCCAGAAACAATCCGCAATAAAGGTTATTAAGCTTGTTTGATTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCAGAAACAATCCGCAATAAAGGTTATTAAGCTTGTTTGATTTA  1037

seq1  TTTTGAAAACCTTTAGTGCTTCCAAGTAGAACGTGTGCGAGGCCAAACAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAACCTTTAGTGCTTCCAAGTAGAACGTGTGCGAGGCCAAACAC  1087

seq1  TTTAGGACTCCTAAGCCTGTTCGAACTGTAGGAGTCCCAGAATGATGGGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGACTCCTAAGCCTGTTCGAACTGTAGGAGTCCCAGAATGATGGGA  1137

seq1  GGCCTCAGCTATCCCCTGCATGAAGCTGTGGTTTGGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGCTATCCCCTGCATGAAGCTGTGGTTTGGAATTC  1178


seq1: chr11_24711412_24712123
seq2: B6Ng01-332I03.g_497_1193

seq1  GGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTG  50

seq1  GCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCGCC  100

seq1  CCAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTG  150

seq1  TATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCC  200

seq1  AAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCAGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCAGGCAGA  250

seq1  CCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGTGCTCTCACCAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGATGG  300

seq1  CGCCGCCCAGAAGCTCTGCGACTCTCTCGCCCGTCCCAGAAACAGCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCCCAGAAGCTCTGCGACTCTCTCGCCCGTCCCAGAAACAGCTGGC  350

seq1  ACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCC  400

seq1  GGAGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGAGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCA-GCCA  449

seq1  GGTAGACCCCCGTGCTC-TCACCGGGAAGGTGG-CCGGCTGTCTGGACAC  498
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  GGTAGACCCCCGTGCTCTTCACCGGGAAGGTGGCCCGGCTGTCTGGACAC  499

seq1  ATGGAACTATTTTTAAACTTATTAAGAAGAAGTGAAATGCTTCAGCTTCA  548
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  ATGGAACTATTTTTAAACTTATTAAG-AGAAGTGAAATGCTTCAGCTTC-  547

seq1  AGAGCTCATGTTAGAAAGAGAGGCCTGCAGTCAATTTCTCGAGTTTATAA  598
      |||||||||| ||||||||||||||||||||| |||||||||| |||| |
seq2  AGAGCTCATG-TAGAAAGAGAGGCCTGCAGTC-ATTTCTCGAG-TTAT-A  593

seq1  CTCCACTTTTGATTCAAAAGGCCAGAGGGCTTGAGAGTGTACATTAATAG  648
      ||||||||||||||| ||||||||||||||| || |||||||| ||||||
seq2  CTCCACTTTTGATTC-AAAGGCCAGAGGGCTGGA-AGTGTACA-TAATAG  640

seq1  AAATCTGCTCCAAATCTGCTCACGGGAAACATTCCTAGTGTGGGGGTGTG  698
       |||||||| | |||||||||||||| |||||  ||||| ||||||||||
seq2  -AATCTGCTTC-AATCTGCTCACGGG-AACAT--CTAGT-TGGGGGTGTG  684

seq1  CTGGAGACCTGCAC  712
      || ||||| |||||
seq2  CT-GAGACGTGCAC  697


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