BAC Information

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BAC

Clone NameB6Ng01-332N17
Chromosome11 (Build37)
Map Location 100,180,070 - 100,294,789
singlet/doubletdoublet
Overlap geneEif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l
Upstream geneKrt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491
Downstream geneKlhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332N17.bB6Ng01-332N17.g
ACCGA118836GA118837
length1,0611,074
definitionB6Ng01-332N17.b B6Ng01-332N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,180,070 - 100,181,132)(100,293,706 - 100,294,789)
sequence
gaattcacttgaccttgaactttttcctctggcttccttctcctgagagc
tgggatgtaccaccatacctagaagttggcagtatttttaagttaagaga
ttttatataaagcacccactctttggggagcatttgaataaagtctgaca
cagtagttatcagcctctggttctcctattggcccccacaaacccagtta
catcacacttggctgtctctttttttttttttttttttttttcggttttt
cgagacagggtttctctgtataccttggctgtcctggaactcactctgta
gaccaggctagcctcgaactcggaaatccgcctgtctctgcttcccaagt
gctgggattaaaggtgtgcgcggtggcacttgcctttaatcccaccactc
atggggcaaaagcagaccccatgtggccagcctggtctatagagttccag
cacagccaaaaccctgtcttgaaaaaacaaaaagaaaggttaactgcttt
gaaaaaaatattcacctagactctacaaaggctttacctcacacacaggc
ttgtaggacaaaaggcatcctgtgaggcttggacatttttttcctggggt
ccccactcctacctaagggactacttccttccttagaagaattaatctaa
ataataatttttggttaccaattttaaaacatgctaatccaaatgatacc
ctatataaggtccaaattttgatcacgttattttatgctgattaaatggc
tatatctgtgaatacgtgcagagaagggtaggttgatgggtggctggatc
agttcgaattttggaggacccgcacgtaattacccctttaagcaaatcga
tcctcaccctaagacccatctcagagctagtgccaggaccccaacagggt
caagatggtagaacgtgcggtatgcgcaagcgcgctcgaatacctccgcc
agttttcgcggcgcctcagacaactaccatgcccactgcgcaagcgcgca
agcgacaagctttccctccccctctcgccctccttgagtaacagaaacat
cctttccaggc
gaattccaaacagtggtggtgcacacctttagtcccagcactcaagaggc
tgaggcagctggatttctgagttcaagaccagcctggtctacagagtgag
ttccaggacagctagcgctacacagagaaaccctgtcttgaaaaaacaaa
aaagatgaatggctcctgaggaaagacactcaaggttgacctcagacctc
tacagttgggtcacaggtagacaccccacacacacacccaacaccccaca
cccacagacacaagcaagcatgaatacatgtttgcgtgcacatgtgctct
atacacacacacaaatataaaatacctagcccaagtagaaaataaaaacc
aggagccagggctgtggcattctcaaccgtttggtttctttgcagggagg
gctataagacgttcttcgacacactctaccagaacaacatcccccttttc
atcttctcagcgggcattggtgacatcctggaagaaattatccgacagat
gaaagtgttccaccccaacatccacattgtgtccaactacatggacttca
gtgaggatgtgagccatgtgttggctgggctgctgaggaggggtgggctg
cctgtagccttggtgccttccgcttgcccgggtggtctctttgccctctg
ctgggcatttttatcctcttcatctttctttctttctttgagacaagagt
cttgctaaattacccaggttggcctggaggtcctaagcttcgtcagcgct
ctgccctctgtcctctgcctcctgagtggctgggactgtaggtgtgaatc
acggcacttggcttcatagattacgaacttttccttccttccttccttcc
tccctccctccctctttctatctatctatctttctttcttctttctttct
ttctttctttctttctttctttcttcttcttcttctttcttctttctttc
tttggaatagggtcttttttatatagccctagctatctagacttactatg
taaaccagctgggctcagatccagagaaacacactgtgcacccccttctt
gactctcttagccccctgcccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100180070_100181132
seq2: B6Ng01-332N17.b_46_1106

seq1  GAATTCACTTGACCTTGAACTTTTTCCTCTGGCTTCCTTCTCCTGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGACCTTGAACTTTTTCCTCTGGCTTCCTTCTCCTGAGAGC  50

seq1  TGGGATGTACCACCATACCTAGAAGTTGGCAGTATTTTTAAGTTAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGTACCACCATACCTAGAAGTTGGCAGTATTTTTAAGTTAAGAGA  100

seq1  TTTTATATAAAGCACCCACTCTTTGGGGAGCATTTGAATAAAGTCTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATAAAGCACCCACTCTTTGGGGAGCATTTGAATAAAGTCTGACA  150

seq1  CAGTAGTTATCAGCCTCTGGTTCTCCTATTGGCCCCCACAAACCCAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTATCAGCCTCTGGTTCTCCTATTGGCCCCCACAAACCCAGTTA  200

seq1  CATCACACTTGGCTGTCTCTTTTTTTTTTTTTTTTTTTTTTTCGGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACACTTGGCTGTCTCTTTTTTTTTTTTTTTTTTTTTTTCGGTTTTT  250

seq1  CGAGACAGGGTTTCTCTGTATACCTTGGCTGTCCTGGAACTCACTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTGTATACCTTGGCTGTCCTGGAACTCACTCTGTA  300

seq1  GACCAGGCTAGCCTCGAACTCGGAAATCCGCCTGTCTCTGCTTCCCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTAGCCTCGAACTCGGAAATCCGCCTGTCTCTGCTTCCCAAGT  350

seq1  GCTGGGATTAAAGGTGTGCGCGGTGGCACTTGCCTTTAATCCCACCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGTGTGCGCGGTGGCACTTGCCTTTAATCCCACCACTC  400

seq1  ATGGGGCAAAAGCAGACCCCATGTGGCCAGCCTGGTCTATAGAGTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCAAAAGCAGACCCCATGTGGCCAGCCTGGTCTATAGAGTTCCAG  450

seq1  CACAGCCAAAACCCTGTCTTGAAAAAACAAAAAGAAAGGTTAACTGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCAAAACCCTGTCTTGAAAAAACAAAAAGAAAGGTTAACTGCTTT  500

seq1  GAAAAAAATATTCACCTAGACTCTACAAAGGCTTTACCTCACACACAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATATTCACCTAGACTCTACAAAGGCTTTACCTCACACACAGGC  550

seq1  TTGTAGGACAAAAGGCATCCTGTGAGGCTTGGACATTTTTTTCCTGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGACAAAAGGCATCCTGTGAGGCTTGGACATTTTTTTCCTGGGGT  600

seq1  CCCCACTCCTACCTAAGGGACTACTTCCTTCCTTAGAAGAATTAATCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCTACCTAAGGGACTACTTCCTTCCTTAGAAGAATTAATCTAA  650

seq1  ATAATAATTTTTGGTTACCAATTTTAAAACATGCTAATCCAAATGATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATTTTTGGTTACCAATTTTAAAACATGCTAATCCAAATGATACC  700

seq1  CTATATAAGGTCCAAATTTTGATCACGTTATTTTATGCTGATTAAATGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAAGGTCCAAATTTTGATCACGTTATTTTATGCTGATTAAATGGC  750

seq1  TATATCTGTGAATACGTGCAGAGAAGGGTAGGTTGATGGGTGGCTGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTGTGAATACGTGCAGAGAAGGGTAGGTTGATGGGTGGCTGGATC  800

seq1  AG-TCGAATTTTGGAGGACCCGCACGTAATTACCCTTTAAAGCAAATCGA  849
      || |||||||||||||||||||||||||||||||| || |||||||||||
seq2  AGTTCGAATTTTGGAGGACCCGCACGTAATTACCCCTTTAAGCAAATCGA  850

seq1  TCCTCACCCTAAGACCCATCTCAGAGCTAGTGCCAGGACCCCAACAGGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCCTAAGACCCATCTCAGAGCTAGTGCCAGGACCCCAACAGGGT  900

seq1  CAAGATGGTAGAACGTGCGGTAGGCGCAGGCGCGCTCGAA-ACCTCCGCC  948
      |||||||||||||||||||||| ||||| ||||||||||| |||||||||
seq2  CAAGATGGTAGAACGTGCGGTATGCGCAAGCGCGCTCGAATACCTCCGCC  950

seq1  AGTTTTCGCGGCCGCTCAGACAACTACCATGCCCACTGCGCAAGCGCGCA  998
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCGCGGCGCCTCAGACAACTACCATGCCCACTGCGCAAGCGCGCA  1000

seq1  GGCGGACCAAGCTTTCCCTCCCCCCTCTCGCCCCTCCCTGAGTCAACAG-  1047
       |||   |||||||||||| |||||||||| |||||| ||||| ||||| 
seq2  AGCG--ACAAGCTTTCCCT-CCCCCTCTCG-CCCTCCTTGAGT-AACAGA  1045

seq1  AACATCCTTTCCAGGC  1063
      ||||||||||||||||
seq2  AACATCCTTTCCAGGC  1061

seq1: chr11_100293706_100294789
seq2: B6Ng01-332N17.g_67_1140 (reverse)

seq1  TCTGGGCAGGGGGCTAGGAGAGTCAAGGA-GGGGTGCACAGGTGTGTTTC  49
      |||||||||||||||| |||||||||| | |||||||||| |||||||||
seq2  TCTGGGCAGGGGGCTAAGAGAGTCAAGAAGGGGGTGCACA-GTGTGTTTC  49

seq1  TCTGTGAATCTGAGGCCAGCCTGGTTTACATAGTAAGTTCTAGAATAGCT  99
      ||  || ||||||| |||| ||||||||||||||||| ||||| ||||||
seq2  TC--TGGATCTGAGCCCAG-CTGGTTTACATAGTAAG-TCTAG-ATAGCT  94

seq1  AGGGCTATAT-AAAAAGACCCTATTCCAAAAGAAAGAAAGAAAGAAAGAA  148
      |||||||||| |||||||||||||||| |||||||||||| |||||||||
seq2  AGGGCTATATAAAAAAGACCCTATTCC-AAAGAAAGAAAG-AAGAAAGAA  142

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  198
         |||||   ||||||||||||||||||||||||||||||||||| |||
seq2  --GAAGAA--GAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG-AAG  187

seq1  AAAGAAAGATAGATAGATAGAAAGAGGGAGGGAGGGAGGAAGGAAGGAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGATAGATAGATAGAAAGAGGGAGGGAGGGAGGAAGGAAGGAAG  237

seq1  GAAGG-AAAGTTCGTAATCTATGAAGCCAAGTGCCGTGATTCACACCTAC  297
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAGTTCGTAATCTATGAAGCCAAGTGCCGTGATTCACACCTAC  287

seq1  AGTCCCAGCCACTCAGGAGGCAGAGGACAGAGGGCAGAGCGCTGACGAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAGCCACTCAGGAGGCAGAGGACAGAGGGCAGAGCGCTGACGAAG  337

seq1  CTTAGGACCTCCAGGCCAACCTGGGTAATTTAGCAAGACTCTTGTCTCAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGACCTCCAGGCCAACCTGGGTAATTTAGCAAGACTCTTGTCTCAA  387

seq1  AGAAAGAAAGAAAGATGAAGAGGATAAAAATGCCCAGCAGAGGGCAAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGATGAAGAGGATAAAAATGCCCAGCAGAGGGCAAAGA  437

seq1  GACCACCCGGGCAAGCGGAAGGCACCAAGGCTACAGGCAGCCCACCCCTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCCGGGCAAGCGGAAGGCACCAAGGCTACAGGCAGCCCACCCCTC  487

seq1  CTCAGCAGCCCAGCCAACACATGGCTCACATCCTCACTGAAGTCCATGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGCCCAGCCAACACATGGCTCACATCCTCACTGAAGTCCATGTA  537

seq1  GTTGGACACAATGTGGATGTTGGGGTGGAACACTTTCATCTGTCGGATAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACACAATGTGGATGTTGGGGTGGAACACTTTCATCTGTCGGATAA  587

seq1  TTTCTTCCAGGATGTCACCAATGCCCGCTGAGAAGATGAAAAGGGGGATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCAGGATGTCACCAATGCCCGCTGAGAAGATGAAAAGGGGGATG  637

seq1  TTGTTCTGGTAGAGTGTGTCGAAGAACGTCTTATAGCCCTCCCTGCAAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGGTAGAGTGTGTCGAAGAACGTCTTATAGCCCTCCCTGCAAAG  687

seq1  AAACCAAACGGTTGAGAATGCCACAGCCCTGGCTCCTGGTTTTTATTTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAACGGTTGAGAATGCCACAGCCCTGGCTCCTGGTTTTTATTTTC  737

seq1  TACTTGGGCTAGGTATTTTATATTTGTGTGTGTGTATAGAGCACATGTGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGGCTAGGTATTTTATATTTGTGTGTGTGTATAGAGCACATGTGC  787

seq1  ACGCAAACATGTATTCATGCTTGCTTGTGTCTGTGGGTGTGGGGTGTTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAACATGTATTCATGCTTGCTTGTGTCTGTGGGTGTGGGGTGTTGG  837

seq1  GTGTGTGTGTGGGGTGTCTACCTGTGACCCAACTGTAGAGGTCTGAGGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGGGGTGTCTACCTGTGACCCAACTGTAGAGGTCTGAGGTC  887

seq1  AACCTTGAGTGTCTTTCCTCAGGAGCCATTCATCTTTTTTGTTTTTTCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGAGTGTCTTTCCTCAGGAGCCATTCATCTTTTTTGTTTTTTCAA  937

seq1  GACAGGGTTTCTCTGTGTAGCGCTAGCTGTCCTGGAACTCACTCTGTAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTGTAGCGCTAGCTGTCCTGGAACTCACTCTGTAGA  987

seq1  CCAGGCTGGTCTTGAACTCAGAAATCCAGCTGCCTCAGCCTCTTGAGTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGTCTTGAACTCAGAAATCCAGCTGCCTCAGCCTCTTGAGTGC  1037

seq1  TGGGACTAAAGGTGTGCACCACCACTGTTTGGAATTC  1084
      |||||||||||||||||||||||||||||||||||||
seq2  TGGGACTAAAGGTGTGCACCACCACTGTTTGGAATTC  1074