BAC Information

Click to search

BAC

Clone NameB6Ng01-333F11
Chromosome11 (Build37)
Map Location 40,065,592 - 40,248,607
singlet/doubletdoublet
Overlap geneLOC100039241
Upstream genenone
Downstream geneLOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333F11.bB6Ng01-333F11.g
ACCGA119180GA119181
length1,173867
definitionB6Ng01-333F11.b B6Ng01-333F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,247,434 - 40,248,607)(40,065,592 - 40,066,458)
sequence
gaattctttgtgggaacttcttgtcagctttaaagggatttaagtgggtg
tattttttttaaagtatcctttatagtagcaggtcttcttatatacaggg
ccaactttatttccattttccctcttgtccctgagagaaaaggaccatct
agtttttcatttggctaattggagttggaagtggatttctgatatcagtt
tcatattagaagtgttttctttttgtacttgcgggtaccccatggagcca
aggaggtcacagtgggttacactaccccctatataggtctttcttctctc
cttgtatcagaatcaaggactctgagagctgtctgctcttggtacaaact
cagagttctgcagggcactcctgtttctgatttttttctattcctatgtt
catttagaaatgggaacagtttcctttcagaacccacatatggactccaa
aattaagtgttgcaagttattgaaacatatagtctctaaagacctaattt
tatttatatattaattttctttacttgacattaatattaggagcagcttg
ctacaataccttgaaaaaggaccacagcaaggctcttttggtaccgttca
aaacccacactatgccagctctctgagaatgcaatcaaaagaagtaatct
gttatacaaagcgaaataggactgtttctgtaattagcacgaacacacca
aacaaaacaagactaattactggagtgggaaaaagcagaatgaattttgt
gaaaaacaggctatctttctcactaggcgggtttcttattgtgtggctct
tcaactctggagaataggaattttcatgacattaacacagtttattaatg
atcattgtaagtaactccatccacctaattaaatcatcagctacaattgg
taacaggggagggaatttaaatggagctgttctgacaaagtagttggcac
cacagtcctaaatatttaatactccctgtggctggattaatgggaacatt
ttactgaggtgtttagcaggtctctcaaaggtgactgacagaacatttct
catgctttttcttttttaataaccaattataattttggcattacatgttg
taactgagtatgatgcatagtgagaaattatagttaaacctttttctttt
tattcaattacgagacgtgtggg

gaattccaagttatagccctgccttaaaccaactgcataataaccactgg
cattgaacatcatgcatctattcccataccgaatatcaactcatttcaat
gtggctctagtttgaagatgaatgtattagagagatgacactatatcatg
ctggggtcttgtcacttgtggcacttttgaccactaaaaatggaaagaaa
aaaagtaaacttatacttatttagaatagtgagaaattatgagccttttt
attttactatgtctcatcttcttttgttttttattcaaaaaagaatcgaa
gaacctatcatcttctacacactaagtttgatttgatggctacagtgaga
acagcttagttaactttcacttcaacttttcaacttgacagaactcatac
tacatgagcagctgccatacacggagggttagtccagaaggaagactttc
cacaaggcactctccctgaatttcaggttgttcttatagcaacttactgt
gtgtgttgtattgttatcttcagaatattcatgatgatcggaaggtttga
tgaggtcagcaaattgtccgtagttgcaaaatcaataattattttgtaca
gttaacatttgaaccatgattcacagtctaaattcattatccctttctaa
ggccataaaatagaatataactcatctaaatagaacatccttaatagaag
aaagcacttatgacaatgtggggcttctggcccaagcctagctttataca
aaaattctcaggagaacatatggattagtttgccttagataaaaatagta
aataccaaatatttgagcagattttctgtttatgtttacatggtgtgtgt
gtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_40247434_40248607
seq2: B6Ng01-333F11.b_46_1218 (reverse)

seq1  CCCACA-GTCTCGTAAATGGAATAAAAGAAAAAGGTTTTAATTATAATTT  49
      |||||| ||||||||| || |  |||||||||||| ||||| ||||||||
seq2  CCCACACGTCTCGTAATTGAATAAAAAGAAAAAGG-TTTAACTATAATTT  49

seq1  CTCACTATGCATCATACTCAGTTAC-ACATTGTATGCAAAAATTTATAAT  98
      ||||||||||||||||||||||||| ||||   |||| |||| |||||||
seq2  CTCACTATGCATCATACTCAGTTACAACATGTAATGCCAAAA-TTATAAT  98

seq1  TTGGTTTATTAAAAAGAAAAAAGCATGAGAAATG-TCTGTCAGTCACCTT  147
      |  | ||||||||||  ||||||||||||||||| |||||||||||||||
seq2  T--GGTTATTAAAAAAGAAAAAGCATGAGAAATGTTCTGTCAGTCACCTT  146

seq1  TGAGAGACCTGGCTAAACACCTCAGT-AAATGTTCCCATTAATCCAGCCA  196
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  TGAGAGACCT-GCTAAACACCTCAGTAAAATGTTCCCATTAATCCAGCCA  195

seq1  CAGGGAGTATTAAATATTTAGGACTGTGGTGCCAACTACTTTGTCAGAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGTATTAAATATTTAGGACTGTGGTGCCAACTACTTTGTCAGAAC  245

seq1  AGCTCCATTTAAATTCCCTCCCCTGTTACCAATTGTAGCTGATGATTTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCATTTAAATTCCCTCCCCTGTTACCAATTGTAGCTGATGATTTAA  295

seq1  TTAGGTGGATGGAGTTACTTACAATGATCATTAATAAACTGTGTTAATGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGGATGGAGTTACTTACAATGATCATTAATAAACTGTGTTAATGT  345

seq1  CATGAAAATTCCTATTCTCCAGAGTTGAAGAGCCACACAATAAGAAACCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATTCCTATTCTCCAGAGTTGAAGAGCCACACAATAAGAAACCC  395

seq1  GCCTAGTGAGAAAGATAGCCTGTTTTTCACAAAATTCATTCTGCTTTTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTGAGAAAGATAGCCTGTTTTTCACAAAATTCATTCTGCTTTTTC  445

seq1  CCACTCCAGTAATTAGTCTTGTTTTGTTTGGTGTGTTCGTGCTAATTACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCAGTAATTAGTCTTGTTTTGTTTGGTGTGTTCGTGCTAATTACA  495

seq1  GAAACAGTCCTATTTCGCTTTGTATAACAGATTACTTCTTTTGATTGCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTCCTATTTCGCTTTGTATAACAGATTACTTCTTTTGATTGCAT  545

seq1  TCTCAGAGAGCTGGCATAGTGTGGGTTTTGAACGGTACCAAAAGAGCCTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGAGCTGGCATAGTGTGGGTTTTGAACGGTACCAAAAGAGCCTT  595

seq1  GCTGTGGTCCTTTTTCAAGGTATTGTAGCAAGCTGCTCCTAATATTAATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTCCTTTTTCAAGGTATTGTAGCAAGCTGCTCCTAATATTAATG  645

seq1  TCAAGTAAAGAAAATTAATATATAAATAAAATTAGGTCTTTAGAGACTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAAAGAAAATTAATATATAAATAAAATTAGGTCTTTAGAGACTAT  695

seq1  ATGTTTCAATAACTTGCAACACTTAATTTTGGAGTCCATATGTGGGTTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCAATAACTTGCAACACTTAATTTTGGAGTCCATATGTGGGTTCT  745

seq1  GAAAGGAAACTGTTCCCATTTCTAAATGAACATAGGAATAGAAAAAAATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAACTGTTCCCATTTCTAAATGAACATAGGAATAGAAAAAAATC  795

seq1  AGAAACAGGAGTGCCCTGCAGAACTCTGAGTTTGTACCAAGAGCAGACAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGGAGTGCCCTGCAGAACTCTGAGTTTGTACCAAGAGCAGACAG  845

seq1  CTCTCAGAGTCCTTGATTCTGATACAAGGAGAGAAGAAAGACCTATATAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGAGTCCTTGATTCTGATACAAGGAGAGAAGAAAGACCTATATAG  895

seq1  GGGGTAGTGTAACCCACTGTGACCTCCTTGGCTCCATGGGGTACCCGCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGTGTAACCCACTGTGACCTCCTTGGCTCCATGGGGTACCCGCAA  945

seq1  GTACAAAAAGAAAACACTTCTAATATGAAACTGATATCAGAAATCCACTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAAAGAAAACACTTCTAATATGAAACTGATATCAGAAATCCACTT  995

seq1  CCAACTCCAATTAGCCAAATGAAAAACTAGATGGTCCTTTTCTCTCAGGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCAATTAGCCAAATGAAAAACTAGATGGTCCTTTTCTCTCAGGG  1045

seq1  ACAAGAGGGAAAATGGAAATAAAGTTGGCCCTGTATATAAGAAGACCTGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGGGAAAATGGAAATAAAGTTGGCCCTGTATATAAGAAGACCTGC  1095

seq1  TACTATAAAGGATACTTTAAAAAAAATACACCCACTTAAATCCCTTTAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATAAAGGATACTTTAAAAAAAATACACCCACTTAAATCCCTTTAAA  1145

seq1  GCTGACAAGAAGTTCCCACAAAGAATTC  1174
      ||||||||||||||||||||||||||||
seq2  GCTGACAAGAAGTTCCCACAAAGAATTC  1173


seq1: chr11_40065592_40066458
seq2: B6Ng01-333F11.g_68_934

seq1  GAATTCCAAGTTATAGCCCTGCCTTAAACCAACTGCATAATAACCACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTATAGCCCTGCCTTAAACCAACTGCATAATAACCACTGG  50

seq1  CATTGAACATCATGCATCTATTCCCATACCGAATATCAACTCATTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACATCATGCATCTATTCCCATACCGAATATCAACTCATTTCAAT  100

seq1  GTGGCTCTAGTTTGAAGATGAATGTATTAGAGAGATGACACTATATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTAGTTTGAAGATGAATGTATTAGAGAGATGACACTATATCATG  150

seq1  CTGGGGTCTTGTCACTTGTGGCACTTTTGACCACTAAAAATGGAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTCTTGTCACTTGTGGCACTTTTGACCACTAAAAATGGAAAGAAA  200

seq1  AAAAGTAAACTTATACTTATTTAGAATAGTGAGAAATTATGAGCCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAACTTATACTTATTTAGAATAGTGAGAAATTATGAGCCTTTTT  250

seq1  ATTTTACTATGTCTCATCTTCTTTTGTTTTTTATTCAAAAAAGAATCGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTATGTCTCATCTTCTTTTGTTTTTTATTCAAAAAAGAATCGAA  300

seq1  GAACCTATCATCTTCTACACACTAAGTTTGATTTGATGGCTACAGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTATCATCTTCTACACACTAAGTTTGATTTGATGGCTACAGTGAGA  350

seq1  ACAGCTTAGTTAACTTTCACTTCAACTTTTCAACTTGACAGAACTCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAGTTAACTTTCACTTCAACTTTTCAACTTGACAGAACTCATAC  400

seq1  TACATGAGCAGCTGCCATACACGGAGGGTTAGTCCAGAAGGAAGACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGCAGCTGCCATACACGGAGGGTTAGTCCAGAAGGAAGACTTTC  450

seq1  CACAAGGCACTCTCCCTGAATTTCAGGTTGTTCTTATAGCAACTTACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGCACTCTCCCTGAATTTCAGGTTGTTCTTATAGCAACTTACTGT  500

seq1  GTGTGTTGTATTGTTATCTTCAGAATATTCATGATGATCGGAAGGTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGTATTGTTATCTTCAGAATATTCATGATGATCGGAAGGTTTGA  550

seq1  TGAGGTCAGCAAATTGTCCGTAGTTGCAAAATCAATAATTATTTTGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAGCAAATTGTCCGTAGTTGCAAAATCAATAATTATTTTGTACA  600

seq1  GTTAACATTTGAACCATGATTCACAGTCTAAATTCATTATCCCTTTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTTGAACCATGATTCACAGTCTAAATTCATTATCCCTTTCTAA  650

seq1  GGCCATAAAATAGAATATAACTCATCTAAATAGAACATCCTTAATAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAAATAGAATATAACTCATCTAAATAGAACATCCTTAATAGAAG  700

seq1  AAAGCACTTATGACAATGTGGGGCTTCTGGCCCAAGCCTAGCTTTATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTATGACAATGTGGGGCTTCTGGCCCAAGCCTAGCTTTATACA  750

seq1  AAAATTCTCAGGAGAACATATGGATTAGTTTGCCTTAGATAAAAATAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTCAGGAGAACATATGGATTAGTTTGCCTTAGATAAAAATAGTA  800

seq1  AATACCAAATATTTGAGCAGATTTTCTGTTTATGTTTACATGGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAATATTTGAGCAGATTTTCTGTTTATGTTTACATGGTGTGTGT  850

seq1  GTGTGTGTGTGTGTGTG  867
      |||||||||||||||||
seq2  GTGTGTGTGTGTGTGTG  867


| Home | SequenceCutter | Blast | Download |