BAC Information

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BAC

Clone NameB6Ng01-333J12
Chromosome11 (Build37)
Map Location 19,608,369 - 19,609,516
singlet/doubletsinglet
Overlap genenone
Upstream geneMeis1, LOC635455, LOC100042708
Downstream geneGlns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333J12.bB6Ng01-333J12.g
ACCGA119347GA119348
length1,137961
definitionB6Ng01-333J12.b B6Ng01-333J12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcagggtaatgctcatgaaaaggttcccccttcccccacttct
tggtttcattgtagttttgctgtttggaggttttatgttgttcatttagt
ttcctggctattggggttttatagtcatatttcctttgtttaatataatt
tctttttttcttttagctatttttgttagggtgcccagaagcttcagtta
tgagtggctgtaaagtaaaatatattatgattattacaatgataaagtat
aagcctttaagagtctagttatattgacccatattttttctttctccatc
tctccaagatacacacagaggcacattggaaacgcaatagaaaacagctg
ccaatttccagccagaagttgaaaatgcagactcaaatctacagcaagag
agcttcagactggactggctcccagcagaattgtggccagaaacctaggc
ttctgttgcctgttggcctctgtgatgtggcagaagacaggctggaatgt
ccgtaccagagcctggccttggccaccactgcttgtttctcaacttttcc
caagccacctgactccccggatcgtcagctctcctgtctgtgagagaatc
accatccctgtatggacgaaccaagcaggctcccacgcacaggcaggggc
tcagggtgtgtgatgtggagtacacagcccctctgcttcctccgtcccct
tagtacctgctttctgactcagacctccctggtgactgcagctcctgaag
caatgtctctatatatcttactcatgtgactcatgatgcttttccttaca
gtcacggatttcaagtgatactctgattgaaccccagtcctgctagatgt
ctagctgtaagaggaattgatgaccccttagttgtaaggtggtggtgatt
cacgaatgtcattcctacagacaagagtttagactagtgaaggtttttct
ttattctgctcagcagtaaagcatccaaagcttcaggaatgtctctctat
tgtggatcattaatgggcatctatatgggcatcacaagcatttcttttta
tggagggagagactcgaacttttagtcatatctaaagttagcttggtgag
tcttcatcatgctgacctcttcttgtttctgggatga
gaattccccaggagggttactcggaaaagggattcttaagagtcagccta
aaagtcagccaaaaagtcagccacagcaatgtaaacaaagggaagtcttg
tgcatgcatcagggctatagacaaaaacaaaaacaaaaacaaaaacaaaa
cggggaagcgggcataacaaccacaaggcacacaggctgacacactcact
ctccctccctctcacttcctccttttcattctcctttctctctctctctc
tctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtaaaattctctggcccaccctgcttgccct
ctgactcgctccgtgaaaccagctgagactgggaaacctaaaaaagcaaa
cctaaatcacgggactttaaaaaatagaaatatactgttagaacacatat
cttaaaactgagagaagtctcaaaggaaagagaaacaaagccggatattc
caagcttatagttgagacctctagataggggacagcatccctgccacacc
tgccaaagatatagcgtgagatcgtgagtgttttactggtcctgtgtgtc
cgaataaatatcgcacgacatacagaatgtgagtagttacataccagata
catctgctgtgtgtaactgtagagagacacctattcgtacatgagacaga
ggcagatcgctgtctctcgagtatgtgtaatcatctgatttgtagagatc
tctgattgcgactgattcagatacacgaatatctagcttttatgaccagg
tagacagtatatatctccagcatataggagcgttcagctgatgatgaatc
agccatgcatctcatagctactatcgtctagtagagacatgagatcgaac
acatgagcctgtcaaatgagtgtaatggatcagactgtagctgctagtgt
gtagtcagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_19608369_19609516
seq2: B6Ng01-333J12.b_49_1185 (reverse)

seq1  TCATCCCAG-GACAAGAAGAGGTCAGCATGGATGGAAAGACTCA-CAAGC  48
      |||||||||  |||||||||||||||||| ||||  |||||||| |||||
seq2  TCATCCCAGAAACAAGAAGAGGTCAGCAT-GATG--AAGACTCACCAAGC  47

seq1  TAACTTTAGGATATGACTTAAAAGGTTTCGGGTTCTCTCCCTCCATTAAA  98
      |||||||| |||||||| ||||||  |||| | |||||||||||| ||||
seq2  TAACTTTA-GATATGAC-TAAAAG--TTCGAG-TCTCTCCCTCCA-TAAA  91

seq1  AAGAAATGGCTTGTGATGCCCATATTAGATGCCCATTAATGATTCCACAA  148
      ||||||| |||||||||||||||| ||||||||||||||||| |||||||
seq2  AAGAAAT-GCTTGTGATGCCCATA-TAGATGCCCATTAATGA-TCCACAA  138

seq1  TTAGAGAGACATTCCTGAAGCTTTGGATGCTTTACTGCTGAGCAGAATAA  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TAGAGAGACATTCCTGAAGCTTTGGATGCTTTACTGCTGAGCAGAATAA  187

seq1  AGAAAAACCTTCACTAGTCTAAACTCTTGTCTGTAGGAATGACATTCGTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACCTTCACTAGTCTAAACTCTTGTCTGTAGGAATGACATTCGTG  237

seq1  AATCACCACCACCTTACAACTAAGGGGTCATCAATTCCTCTTACAGCTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCACCACCTTACAACTAAGGGGTCATCAATTCCTCTTACAGCTAG  287

seq1  ACATCTAGCAGGACTGGGGTTCAATCAGAGTATCACTTGAAATCCGTGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAGCAGGACTGGGGTTCAATCAGAGTATCACTTGAAATCCGTGAC  337

seq1  TGTAAGGAAAAGCATCATGAGTCACATGAGTAAGATATATAGAGACATTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGAAAAGCATCATGAGTCACATGAGTAAGATATATAGAGACATTG  387

seq1  CTTCAGGAGCTGCAGTCACCAGGGAGGTCTGAGTCAGAAAGCAGGTACTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGAGCTGCAGTCACCAGGGAGGTCTGAGTCAGAAAGCAGGTACTA  437

seq1  AGGGGACGGAGGAAGCAGAGGGGCTGTGTACTCCACATCACACACCCTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACGGAGGAAGCAGAGGGGCTGTGTACTCCACATCACACACCCTGA  487

seq1  GCCCCTGCCTGTGCGTGGGAGCCTGCTTGGTTCGTCCATACAGGGATGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGCCTGTGCGTGGGAGCCTGCTTGGTTCGTCCATACAGGGATGGT  537

seq1  GATTCTCTCACAGACAGGAGAGCTGACGATCCGGGGAGTCAGGTGGCTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTCACAGACAGGAGAGCTGACGATCCGGGGAGTCAGGTGGCTTG  587

seq1  GGAAAAGTTGAGAAACAAGCAGTGGTGGCCAAGGCCAGGCTCTGGTACGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTTGAGAAACAAGCAGTGGTGGCCAAGGCCAGGCTCTGGTACGG  637

seq1  ACATTCCAGCCTGTCTTCTGCCACATCACAGAGGCCAACAGGCAACAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCAGCCTGTCTTCTGCCACATCACAGAGGCCAACAGGCAACAGAA  687

seq1  GCCTAGGTTTCTGGCCACAATTCTGCTGGGAGCCAGTCCAGTCTGAAGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGTTTCTGGCCACAATTCTGCTGGGAGCCAGTCCAGTCTGAAGCT  737

seq1  CTCTTGCTGTAGATTTGAGTCTGCATTTTCAACTTCTGGCTGGAAATTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTGTAGATTTGAGTCTGCATTTTCAACTTCTGGCTGGAAATTGG  787

seq1  CAGCTGTTTTCTATTGCGTTTCCAATGTGCCTCTGTGTGTATCTTGGAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTTTCTATTGCGTTTCCAATGTGCCTCTGTGTGTATCTTGGAGA  837

seq1  GATGGAGAAAGAAAAAATATGGGTCAATATAACTAGACTCTTAAAGGCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGAAAGAAAAAATATGGGTCAATATAACTAGACTCTTAAAGGCTT  887

seq1  ATACTTTATCATTGTAATAATCATAATATATTTTACTTTACAGCCACTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTATCATTGTAATAATCATAATATATTTTACTTTACAGCCACTCA  937

seq1  TAACTGAAGCTTCTGGGCACCCTAACAAAAATAGCTAAAAGAAAAAAAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAAGCTTCTGGGCACCCTAACAAAAATAGCTAAAAGAAAAAAAGA  987

seq1  AATTATATTAAACAAAGGAAATATGACTATAAAACCCCAATAGCCAGGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATTAAACAAAGGAAATATGACTATAAAACCCCAATAGCCAGGAA  1037

seq1  ACTAAATGAACAACATAAAACCTCCAAACAGCAAAACTACAATGAAACCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGAACAACATAAAACCTCCAAACAGCAAAACTACAATGAAACCA  1087

seq1  AGAAGTGGGGGAAGGGGGAACCTTTTCATGAGCATTACCCTGAAGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGGGGAAGGGGGAACCTTTTCATGAGCATTACCCTGAAGAATTC  1137