BAC Information

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BAC

Clone NameB6Ng01-334N03
Chromosome11 (Build37)
Map Location 79,544,013 - 79,567,208
singlet/doubletdoublet
Overlap genenone
Upstream gene1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185
Downstream geneLOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334N03.bB6Ng01-334N03.g
ACCGA120232GA120233
length1,0321,037
definitionB6Ng01-334N03.b B6Ng01-334N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,566,179 - 79,567,208)(79,544,013 - 79,545,051)
sequence
gaattcaagaataatgggtggtggggcgggggaggcacttaagcattgcc
agagccatgataggatgtcttggcatcctgtccctgcctgtccctgtctc
cttctagcatgggaagagctgaggctggctgaggccctctgtcctaattg
ctcatccaccaccaaggcctgtgtgttgtatttctgagcaccttcagtgt
agagaagtcccattcccagggcacctgctaggactgttgcatccacaagg
ccagcaacctttcttgggatttttttttagtagacttcttccaagccagg
taagggccatgcctacctaggggatggcccctggctattttcaacctcta
tcccttgggttgtaatctatgtgttgacacagaggccaatgccctcgcca
ctgtccctctagcaacagccatcaatcaatcaaagtgcatcctgtgcagc
acagtcccaggccctgtggcctcagccttgtgactcaggcagccactgtc
cattcatcagactgatacaaggacagaaaccattttccaaccagactagt
ccatcgtgggtataagagaaagagggttagtgactaaagccaggcgaggg
cactggcctcttggtcctgtgtagttcaggagtctattctccaagatgac
tagagttctcacttaactgggtgtcagggattttaagagctccaggatct
tagcatggtggcaaagttggaaaaaaaaaatctgactcaggcttaggaac
ccatgtgacccttttgacctccagtgagtctaacccttagggaatgtgag
aatcaaactgggaaagcccacaaaacccagccagctctgaaaggtgggag
gcaaaggaggcactgggactcagactcctagagtgggtgcaaagactttt
gtccctctccccggcgcttgccttttgctcctttcgtctccagattacat
aaatccatctcagaatgcagaagaataataccgtcctcaagcctggctcc
ataagaaaatggtaacagccaggagacaaagc
gaattcagttgggtggatggctctggattaagtgcaggccttgcctctgt
cctgggttcctgaggtttgggccactgaagcacagggcgggaggaggttg
tcatctctggggggaatttcaagttcagatgccaacagctgtgggctctg
gcttagacctggggcctctgcacgcccccccttccctgtcagctgtcttg
ggggcaggcacccagtggctttctgttttgcataactgcaaagcagcagc
attcccactgtccccacctctgtctccaccccagccccttttttggtact
agagtttgaactcagggctttagacattctaggcaagtgctctacagctg
aggtatatagttccagccccttttttatttgagacagagtcttatattat
acagtcagcctggcctcgagctcataatccttttagctctatctctagaa
cactgacattaagctgtgcgccaccatgcccagctgctttcctgtttgac
tcctgtgtcaggagcagccctggatggaggtggggtctgttcctgatggc
ttggccattgcagaggtgtctggtgatgccacagcacactgataggtaga
gggacaggcagctgtcagttttccatggaccttgtttctgatgatatatt
attcctcccaaaggtcatcttttgctctgtttcaccagggttcagtatga
cccaccccaccccctggctttagaggtaggcactgtgttccaggcctggg
gacagattgccgagttgtccgaccatgggacttcaattgcatcttctcac
aggcattgctcggtcaacagaatgtcagcttgggaattgctggcagccaa
gttggtatgcatgtgaggatgaagccaacaaagaagaaagaaaacaccga
gtgttttttcaggaacatgcaacccttgtattctgtcaccatcagttgga
atatttcttacctgcccttgagcagccccatcatcccttgatgccagtcc
tccaagctggggcctccacccacctgctagtgactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_79566179_79567208
seq2: B6Ng01-334N03.b_45_1076 (reverse)

seq1  GCTTTGTCTCCTGGCTGTT-CCCTTTTCTTATGGGAGCCAGGCCTGAGGA  49
      ||||||||||||||||||| || ||||||||| |||||||||| ||||||
seq2  GCTTTGTCTCCTGGCTGTTACCATTTTCTTAT-GGAGCCAGGCTTGAGGA  49

seq1  CGGTATTATTCTTCTGCATTCTTGAGATGGATTTATGTAATCTGGAGACG  99
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CGGTATTATTCTTCTGCATTC-TGAGATGGATTTATGTAATCTGGAGACG  98

seq1  AAAGGAGCAAAAGGCAAGCGCCGGGGAGAGGGACAAAAGTCTTTGCACCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCAAAAGGCAAGCGCCGGGGAGAGGGACAAAAGTCTTTGCACCC  148

seq1  ACTCTAGGAGTCTGAGTCCCAGTGCCTCC-TTGCCTCCCACC-TTCAGAG  197
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  ACTCTAGGAGTCTGAGTCCCAGTGCCTCCTTTGCCTCCCACCTTTCAGAG  198

seq1  CTGGCTGGGTTTTGTGGGCTTT-CCAGTTTGATTCTCACATTCCCTAAGG  246
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGGCTGGGTTTTGTGGGCTTTCCCAGTTTGATTCTCACATTCCCTAAGG  248

seq1  GTTAGACTCACTGGAGGTC-AAAGGGTCACATGGGTTCCTAAGCCCTGAG  295
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  GTTAGACTCACTGGAGGTCAAAAGGGTCACATGGGTTCCTAAG-CCTGAG  297

seq1  TCAGATTTTTTTTTTCCAACTTTGCCACCATGCTAAGATCCTGGAGCTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTTTTTTTTCCAACTTTGCCACCATGCTAAGATCCTGGAGCTCT  347

seq1  TAAAATCCCTGACACCCAGTTAAGTGAGAACTCTAGTCATCTTGGAGAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCCTGACACCCAGTTAAGTGAGAACTCTAGTCATCTTGGAGAAT  397

seq1  AGACTCCTGAACTACACAGGACCAAGAGGCCAGTGCCCTCGCCTGGCTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCTGAACTACACAGGACCAAGAGGCCAGTGCCCTCGCCTGGCTTT  447

seq1  AGTCACTAACCCTCTTTCTCTTATACCCACGATGGACTAGTCTGGTTGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTAACCCTCTTTCTCTTATACCCACGATGGACTAGTCTGGTTGGA  497

seq1  AAATGGTTTCTGTCCTTGTATCAGTCTGATGAATGGACAGTGGCTGCCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTTTCTGTCCTTGTATCAGTCTGATGAATGGACAGTGGCTGCCTG  547

seq1  AGTCACAAGGCTGAGGCCACAGGGCCTGGGACTGTGCTGCACAGGATGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAAGGCTGAGGCCACAGGGCCTGGGACTGTGCTGCACAGGATGCA  597

seq1  CTTTGATTGATTGATGGCTGTTGCTAGAGGGACAGTGGCGAGGGCATTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATTGATTGATGGCTGTTGCTAGAGGGACAGTGGCGAGGGCATTGG  647

seq1  CCTCTGTGTCAACACATAGATTACAACCCAAGGGATAGAGGTTGAAAATA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGTCAACACATAGATTACAACCCAAGGGATAGAGGTTGAAAATA  697

seq1  GCCAGGGGCCATCCCCTAGGTAGGCATGGCCCTTACCTGGCTTGGAAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGGCCATCCCCTAGGTAGGCATGGCCCTTACCTGGCTTGGAAGAA  747

seq1  GTCTACTAAAAAAAAATCCCAAGAAAGGTTGCTGGCCTTGTGGATGCAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTAAAAAAAAATCCCAAGAAAGGTTGCTGGCCTTGTGGATGCAAC  797

seq1  AGTCCTAGCAGGTGCCCTGGGAATGGGACTTCTCTACACTGAAGGTGCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAGCAGGTGCCCTGGGAATGGGACTTCTCTACACTGAAGGTGCTC  847

seq1  AGAAATACAACACACAGGCCTTGGTGGTGGATGAGCAATTAGGACAGAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACAACACACAGGCCTTGGTGGTGGATGAGCAATTAGGACAGAGG  897

seq1  GCCTCAGCCAGCCTCAGCTCTTCCCATGCTAGAAGGAGACAGGGACAGGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCCAGCCTCAGCTCTTCCCATGCTAGAAGGAGACAGGGACAGGC  947

seq1  AGGGACAGGATGCCAAGACATCCTATCATGGCTCTGGCAATGCTTAAGTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGGATGCCAAGACATCCTATCATGGCTCTGGCAATGCTTAAGTG  997

seq1  CCTCCCCCGCCCCACCACCCATTATTCTTGAATTC  1030
      |||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCGCCCCACCACCCATTATTCTTGAATTC  1032

seq1: chr11_79544013_79545051
seq2: B6Ng01-334N03.g_67_1103

seq1  GAATTCAGTTGGGTGGATGGCTCTGGATTAAGTGCAGGCCTTGCCTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGGGTGGATGGCTCTGGATTAAGTGCAGGCCTTGCCTCTGT  50

seq1  CCTGGGTTCCTGAGGTTTGGGCCACTGAAGCACAGGGCGGGAGGAGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTCCTGAGGTTTGGGCCACTGAAGCACAGGGCGGGAGGAGGTTG  100

seq1  TCATCTCTGGGGGGAATTTCAAGTTCAGATGCCAACAGCTGTGGGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTGGGGGGAATTTCAAGTTCAGATGCCAACAGCTGTGGGCTCTG  150

seq1  GCTTAGACCTGGGGCCTCTGCACGCCCCCCCTTCCCTGTCAGCTGTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGACCTGGGGCCTCTGCACGCCCCCCCTTCCCTGTCAGCTGTCTTG  200

seq1  GGGGCAGGCACCCAGTGGCTTTCTGTTTTGCATAACTGCAAAGCAGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGCACCCAGTGGCTTTCTGTTTTGCATAACTGCAAAGCAGCAGC  250

seq1  ATTCCCACTGTCCCCACCTCTGTCTCCACCCCAGCCCCTTTTTTGGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCACTGTCCCCACCTCTGTCTCCACCCCAGCCCCTTTTTTGGTACT  300

seq1  AGAGTTTGAACTCAGGGCTTTAGACATTCTAGGCAAGTGCTCTACAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGAACTCAGGGCTTTAGACATTCTAGGCAAGTGCTCTACAGCTG  350

seq1  AGGTATATAGTTCCAGCCCCTTTTTTATTTGAGACAGAGTCTTATATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATATAGTTCCAGCCCCTTTTTTATTTGAGACAGAGTCTTATATTAT  400

seq1  ACAGTCAGCCTGGCCTCGAGCTCATAATCCTTTTAGCTCTATCTCTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGCCTGGCCTCGAGCTCATAATCCTTTTAGCTCTATCTCTAGAA  450

seq1  CACTGACATTAAGCTGTGCGCCACCATGCCCAGCTGCTTTCCTGTTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACATTAAGCTGTGCGCCACCATGCCCAGCTGCTTTCCTGTTTGAC  500

seq1  TCCTGTGTCAGGAGCAGCCCTGGATGGAGGTGGGGTCTGTTCCTGATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTCAGGAGCAGCCCTGGATGGAGGTGGGGTCTGTTCCTGATGGC  550

seq1  TTGGCCATTGCAGAGGTGTCTGGTGATGCCACAGCACACTGATAGGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCATTGCAGAGGTGTCTGGTGATGCCACAGCACACTGATAGGTAGA  600

seq1  GGGACAGGCAGCTGTCAGTTTTCCATGGACCTTGTTTCTGATGATATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGGCAGCTGTCAGTTTTCCATGGACCTTGTTTCTGATGATATATT  650

seq1  ATTCCTCCCAAAGGTCATCTTTTGCTCTGTTTCACCAGGGTTCAGGTATG  700
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTCCTCCCAAAGGTCATCTTTTGCTCTGTTTCACCAGGGTTCA-GTATG  699

seq1  ACCCACCCCACCCCCTGGCTTTAGAGGTAGGCACTGTGTTCCAGGCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCCACCCCCTGGCTTTAGAGGTAGGCACTGTGTTCCAGGCCTGG  749

seq1  GGACAGATTGCCGAGTTGTCCGACCATGGGACTTCAATTGCATCTTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGATTGCCGAGTTGTCCGACCATGGGACTTCAATTGCATCTTCTCA  799

seq1  CAGGCATTGCTCGGTCAACAGAATGTCAGCTT-GGAATTGCTGGCAGCCA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGGCATTGCTCGGTCAACAGAATGTCAGCTTGGGAATTGCTGGCAGCCA  849

seq1  AGTTGGTATGCATGTGAGGATGAAGCCAACAAAGAAGAAAGAAAACACCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTATGCATGTGAGGATGAAGCCAACAAAGAAGAAAGAAAACACCG  899

seq1  AGTGTTTTTTCAGGAACATGC-ACCCTTGTA-TCTGTCACCATCAGGTTG  947
      ||||||||||||||||||||| ||||||||| ||||||||||||| ||||
seq2  AGTGTTTTTTCAGGAACATGCAACCCTTGTATTCTGTCACCATCA-GTTG  948

seq1  GAATATTTCTTACCTGCCC-TGAGCAGCCCCATCCATCCCTTTGATGGCC  996
      ||||||||||||||||||| ||||||||||||| |||||| ||||| |||
seq2  GAATATTTCTTACCTGCCCTTGAGCAGCCCCAT-CATCCC-TTGAT-GCC  995

seq1  AGTCCTCCAGCCTGGGCCCTCCACCCACCTGTCTAGTGACTCT  1039
      |||||||||  ||||| |||||||||||||| |||||||||||
seq2  AGTCCTCCAAGCTGGGGCCTCCACCCACCTG-CTAGTGACTCT  1037