MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-335B19
Chromosome	11 (Build37)
Map Location	108,486,781 - 108,487,960
singlet/doublet	singlet
Overlap gene	Ccdc46
Upstream gene	Helz, Cacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381
Downstream gene	Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Helz (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78455 MGI:1925705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cacng1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12299 MGI:1206582
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cacng4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54377 MGI:1859167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cacng5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140723 MGI:2157946
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prkca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18750 MGI:97595
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Apoh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11818 MGI:88058
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041381 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041381
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	Ccdc46 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76380 MGI:1923673
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Olfr1397-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:258193 MGI:3031231
definition	gene_synonym : MOR5-3 note : olfactory receptor 1397, pseudogene 1 pseudo : _no_value

name	LOC629945 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629945
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Axin2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12006 MGI:1270862
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E030025P04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268498 MGI:2685510
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC194985 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:194985
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 24 Proteins pseudo : _no_value

name	Rgs9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19739 MGI:1338824
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700096J18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67927 MGI:1915177
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs

name	Gna13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14674 MGI:95768
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9930022D16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320509 MGI:2444178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	X83328 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13929 MGI:104837
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc16a6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104681 MGI:2144585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Arsg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74008 MGI:1921258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wipi1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52639 MGI:1261864
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Helz (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50355942 GeneID:78455 MGI:1925705
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : helicase with zinc finger domain transcript_id : NM_198298.1

name	Cacng1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778905 GeneID:12299 MGI:1206582
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium channel, voltage-dependent, gamma subunit 1 transcript_id : NM_007582.2

name	Cacng4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130751 GeneID:54377 MGI:1859167
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium channel, voltage-dependent, gamma subunit 4 transcript_id : NM_019431.2

name	Cacng5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370454 GeneID:140723 MGI:2157946
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calcium channel, voltage-dependent, gamma subunit 5 transcript_id : NM_080644.3

name	Prkca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364622 GeneID:18750 MGI:97595
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C, alpha transcript_id : NM_011101.2

name	Apoh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94400778 GeneID:11818 MGI:88058
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apolipoprotein H transcript_id : NM_013475.3

name	Ccdc46 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125661051 GeneID:76380 MGI:1923673
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 46 transcript_id : NM_029606.3

name	Ccdc46 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125661053 GeneID:76380 MGI:1923673
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 46 transcript_id : NM_145688.2

name	Ccdc46 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125661055 GeneID:76380 MGI:1923673
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 46 transcript_id : NM_029586.2

name	LOC629945 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262550 GeneID:629945
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : similar to splicing factor, arginine/serine-rich 12 transcript_id : XM_001480021.1

name	Axin2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254369 GeneID:12006 MGI:1270862
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : axin2 transcript_id : NM_015732.3

name	E030025P04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390906 GeneID:268498 MGI:2685510
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA E030025P04 gene transcript_id : XM_196056.4

name	Rgs9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755319 GeneID:19739 MGI:1338824
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulator of G-protein signaling 9 transcript_id : NM_011268.1

name	1700096J18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149262552 GeneID:67927 MGI:1915177
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs product : RIKEN cDNA 1700096J18 gene transcript_id : XM_001480042.1

name	Gna13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89001108 GeneID:14674 MGI:95768
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein, alpha 13 transcript_id : NM_010303.3

name	X83328 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115496472 GeneID:13929 MGI:104837
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EST X83328 transcript_id : NM_025275.4

name	Slc16a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71067106 GeneID:104681 MGI:2144585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 16 (monocarboxylic acid transporters), member 6 transcript_id : NM_001029842.1

name	Slc16a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71067108 GeneID:104681 MGI:2144585
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 16 (monocarboxylic acid transporters), member 6 transcript_id : NM_134038.2

name	Arsg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54607164 GeneID:74008 MGI:1921258
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arylsulfatase G transcript_id : NM_028710.2

name	Wipi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130229 GeneID:52639 MGI:1261864
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain, phosphoinositide interacting 1 transcript_id : NM_145940.2

name	Helz (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:50355943 CCDS:CCDS25569.1 GeneID:78455 MGI:1925705
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : helicase with zinc finger domain protein_id : NP_938040.1

name	Cacng1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671658 CCDS:CCDS25570.1 GeneID:12299 MGI:1206582
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : dihydropyridine receptor gamma 1 product : voltage-dependent calcium channel gamma-1 subunit protein_id : NP_031608.1

name	Cacng4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506455 CCDS:CCDS25571.1 GeneID:54377 MGI:1859167
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0019226 - transmission of nerve impulse [Evidence IGI]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : voltage-dependent calcium channel gamma-4 subunit protein_id : NP_062304.1

name	Cacng5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21687006 CCDS:CCDS25572.1 GeneID:140723 MGI:2157946
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : voltage dependent calcium channel gamma 5 subunit product : voltage-dependent calcium channel gamma-5 subunit protein_id : NP_542375.1

name	Prkca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755078 CCDS:CCDS25573.1 GeneID:18750 MGI:97595
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004698 - calcium-dependent protein kinase C activity [Evidence IDA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004697 - protein kinase C activity [Evidence IDA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006874 - calcium ion homeostasis [Evidence IMP]; GO:0002026 - cardiac inotropy [Evidence IMP]; GO:0000188 - inactivation of MAPK activity [Evidence IMP]; GO:0008629 - induction of apoptosis by intracellular signals [Evidence IMP]; GO:0050930 - induction of positive chemotaxis [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0046325 - negative regulation of glucose import [Evidence IMP]; GO:0046627 - negative regulation of insulin receptor signaling pathway [Evidence IMP]; GO:0001933 - negative regulation of protein amino acid phosphorylation [Evidence IMP]; GO:0006469 - negative regulation of protein kinase activity [Evidence IMP]; GO:0030593 - neutrophil chemotaxis [Evidence IMP]; GO:0050729 - positive regulation of inflammatory response [Evidence IMP]; GO:0001934 - positive regulation of protein amino acid phosphorylation [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0006937 - regulation of muscle contraction [Evidence IMP]; GO:0050730 - regulation of peptidyl-tyrosine phosphorylation [Evidence IMP] codon_start : 1 exception : mismatches in translation note : protein kinase c-alpha product : protein kinase C, alpha protein_id : NP_035231.1

name	Apoh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94400779 CCDS:CCDS25574.1 GeneID:11818 MGI:88058
definition	GO_function : GO:0008201 - heparin binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : beta-2-glycoprotein 1 product : apolipoprotein H protein_id : NP_038503.3

name	Ccdc46 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125661052 GeneID:76380 MGI:1923673
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : coiled-coil domain containing 46 isoform 2 protein_id : NP_083882.3

name	Ccdc46 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125661054 GeneID:76380 MGI:1923673
definition	codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : coiled-coil domain containing 46 isoform 3 protein_id : NP_663721.2

name	Ccdc46 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21729780 GeneID:76380 MGI:1923673
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : coiled-coil domain containing 46 isoform 1 protein_id : NP_083862.1

name	LOC629945 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262551 GeneID:629945
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480071.1

name	Axin2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254370 CCDS:CCDS25575.1 GeneID:12006 MGI:1270862
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007222 - frizzled signaling pathway [Evidence IEA]; GO:0001957 - intramembranous ossification [Evidence IMP]; GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0045668 - negative regulation of osteoblast differentiation [Evidence IMP]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]; GO:0030111 - regulation of Wnt receptor signaling pathway [Evidence IDA]; GO:0001756 - somitogenesis [Evidence IDA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 product : axin2 protein_id : NP_056547.3

name	E030025P04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82935421 GeneID:268498 MGI:2685510
definition	codon_start : 1 product : hypothetical protein protein_id : XP_196056.2

name	Rgs9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755320 CCDS:CCDS25576.1 GeneID:19739 MGI:1338824
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ROS GAP product : regulator of G-protein signaling 9 protein_id : NP_035398.1

name	1700096J18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149262553 GeneID:67927 MGI:1915177
definition	codon_start : 1 product : hypothetical protein LOC67927 protein_id : XP_001480092.1

name	Gna13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89001109 CCDS:CCDS25577.1 GeneID:14674 MGI:95768
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence ISS] [Evidence TAS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence TAS] [Evidence ISS]; GO:0019001 - guanyl nucleotide binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IDA]; GO:0001701 - embryonic development (sensu Mammalia) [Evidence IGI]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence TAS]; GO:0001569 - patterning of blood vessels [Evidence IMP]; GO:0030168 - platelet activation [Evidence IMP]; GO:0007243 - protein kinase cascade [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence IMP]; GO:0008360 - regulation of cell shape [Evidence IDA]; GO:0007266 - Rho protein signal transduction [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : guanine nucleotide binding protein, alpha 13 protein_id : NP_034433.3

name	X83328 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75812978 CCDS:CCDS25579.1 GeneID:13929 MGI:104837
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : archaemetzincins-2 protein_id : NP_079551.3

name	Slc16a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71067107 CCDS:CCDS25580.1 GeneID:104681 MGI:2144585
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; monocarboxylate transporter 6 product : solute carrier family 16, member 6 isoform a protein_id : NP_001025013.1

name	Slc16a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527254 GeneID:104681 MGI:2144585
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; monocarboxylate transporter 6 product : solute carrier family 16, member 6 isoform b protein_id : NP_598799.1

name	Arsg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54607165 CCDS:CCDS25581.1 GeneID:74008 MGI:1921258
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence ISS] [Evidence IEA] GO_function : GO:0004065 - arylsulfatase activity [Evidence ISS]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004168 - dolichol kinase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : Arylsulfatase G protein_id : NP_082986.2

name	Wipi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122367 CCDS:CCDS25582.1 GeneID:52639 MGI:1261864
definition	GO_process : GO:0006914 - autophagy [Evidence IEA] codon_start : 1 product : WD40 repeat protein Interacting with phosphoInositides of 49kDa protein_id : NP_666052.1

name	LOC100041381 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041381
definition	number : 1 pseudo : _no_value

name	LOC100041381 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041381
definition	number : 2 pseudo : _no_value

name	LOC194985 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262474 GeneID:194985
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 24 Proteins product : similar to LOC654472 protein pseudo : _no_value transcript_id : XR_032701.1

name	9930022D16Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149262477 GeneID:320509 MGI:2444178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 9930022D16 gene transcript_id : XR_035312.1

clone name	MSMg01-329A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-202E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-309D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-207D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-060F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341E24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-376F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341J08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229N07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111O15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335P18
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-335B19.b	B6Ng01-335B19.g
ACC	GA120441	GA120442
length	1,201	1,192
definition	B6Ng01-335B19.b	B6Ng01-335B19.g
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg ttcaacatccttaatcatcagggaaatgcaaatcaaacaaccctgagatt ccacttcactccagtcagaatggctaatatcaaaaactcaggtgacagca gatgctggcgaggatgtggagaaaggggaacactcctccattgttggtgg gattgcaagcttgtacaactactctggaaatcagtctggcggttcctcag aaaattggacatagtactacaggaggatcacacaatacctctcctgggca tatatccagaagatgtcccaaccggtaagaaggacacatgctccactatg ttcatagcagccttatttataatagccagaagctggaaagaacccagatg cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg aatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaat ggatggacctggagggcatcatcccgagtgaggtaacccaatcacaaagg aactcacacaatatgcactcactgataagtggatattagcccagaaactt aggatacccaagatataagatacaacttgctaaacgcatgaaattcaaga agaaggaagaccaaagtgtggacactttaccccttcctagaaatgggaac aaaacccccatggaaggagttacagagacaaaatttggagctgtgacaaa aagatggaccatctagtgattgtcatatgcagggatccatcccataatca gcttccaaatgctgacaccattgcacacagtagcaaaattttgctgaaag gacccagatatagctctctcttgtgagactatgccggggcctagcaaaca cagaagtggatgatcacagtcagctattggatggatcacacggccccatg caggagctagagatattacccaaggagctaaagggaactgcaccctatag gtggacacaatatgaactaaccagtaccccggagcttcttgtcttctagc tgcatatgcatcaaaagattgacctagtcggcccatccactgaagagaag tccatgggaacttgccacttagatgcccagtacaggaacgccaagcctaa agacattgggtggctaggggagctatcgctaactagcatgacgactagat c	gaattcattttgcagttgctaaatgctgttttgttgttgttgttgttgtt agccagtgattgtggtctgagtaatctcaagattttattacttgaataag aaaagttatgataattaaccagctgcaagcacttgatatatgatgggtgg gtccaaatcagggacagaggtatgagaatgccctgccctcacagcagtct gtgagaggtcgctagttgcccttttgtagtgagtgactcaaaatcagatg ctgagaacagacagccactttctggcaaagagcccacaagctcctgagca aggtcttcagcagtagcttgttatcactgcccagggaggacgagttgtgc atgtgaggttgaactgtacatgctatttgcagcacctcatctacttctag gaggcagcttccttttatccaatttcattcctgtttttaaaattattgac ttagccttcttttacattttttatttattttaaatgtatgagtgttttgc ctgaatgtatgtgttcttcatgtggaggtccgctgcccctagaggtcaga agacgtcattggagccctggaactggagttatgtaagttgtgagctacca tgtaggtgctgggaacagaacccaggtcccgtgcatgagcagcaagtgct cttaactgctgagcacatgtctactttccaatctagtattatgaccctct caaatagtataataccaggagattttgtgatcagaatccttctactccca gtctaatttatagaagagactttgtttagctacttttttgtttagtttag ctttaatttgtttttgttgtttcaaaatatgctgatgtctctgagtcttg atttgctctctttggacatttgttggcaccattcagtggtagtagtgggg taagtgccataagctccctgctgtccagccttcctatccaatattaaata attagattttccacttctactgtaaacagtgcttatgctaaaataatagt cctaaacttgtgtatctgttctggtaactttagggccatttactaagaag gtccttgttttctatcaaggttggagataagggaaagctattccttggtt cttgaattctctcctgtgtgggtcactttcagtgtgggaatgtcgaataa cagttaacgtacttggaactccaagtggaagcattaattact
quality values	Open. Hide. 58 28 37 35 58 54 54 41 35 45 46 46 49 41 27 62 47 27 26 56 47 62 62 62 62 62 62 62 62 62 62 47 39 47 62 56 62 56 54 62 62 49 44 62 62 62 49 62 59 59 62 62 35 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 54 54 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 59 59 59 62 62 62 62 59 62 62 62 62 59 62 62 59 62 59 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 59 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 54 42 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 42 54 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 49 46 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 43 62 59 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 51 54 62 62 62 62 62 62 62 62 62 62 62 62 54 54 54 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 54 54 58 58 54 42 58 58 58 58 42 39 58 58 50 52 54 52 47 52 52 46 46 52 58 46 58 58 45 42 54 52 54 52 46 52 48 49 52 54 54 52 54 53 54 58 45 58 58 48 48 58 58 54 58 54 58 41 58 58 58 58 54 48 52 54 54 54 50 58 58 58 58 52 54 58 54 58 58 58 49 39 49 46 58 51 50 49 48 49 51 42 58 50 47 47 51 51 52 38 58 45 34 47 34 30 38 50 51 50 58 35 41 52 51 58 51 46 41 50 54 50 58 44 54 51 58 49 54 50 58 49 49 50 51 52 54 51 49 19 35 37 58 53 46 51 51 58 48 42 58 52 33 58 50 49 41 37 20 48 46 52 51 50 53 53 40 58 34 51 36 50 50 51 49 44 40 20 31 31 43 44 50 32 52 50 53 39 49 31 26 40 50 58 50 58 28 32 32 58 50 50 37 44 29 41 34 32 50 50 54 51 47 24 54 49 31 42 53 37 44 31 42 53 32 31 40 20 49 54 27 29 54 54 44 51 49 25 42 52 49 50 47 38 36 13 50 51 54 51 40 35 29 51 53 40 40 42 36 53 45 45 34 34 37 54 31 45 33 46 36 39 32 46 44 47 47 37 37 31 54 49 24 30 29 28 31 37 25 51 34 31 45 26 46 32 39 29 31 34 45 37 22 35 31 52 42 36 53 28 45 32 33 30 19 32 32 24 36 41 34 36 36 32 32 31 30 33 22 41 25 42 31 51 46 16 24 51 51 32 21 31 45 24 29 47 30 23 43 26 18 37 25 30 22 32 26 22 31 31 29 30 36 26 41 31 34 30 31 33 30 25 31 41 18 37 31 36 29 32 31 32 22 17 41 41 24 25 31 38 32 23 31 42 46 46 31 30 39 31 31 32 34 33 31 31 31 27 21 30 31 32 33 25 29 28 30 22 32 25 29 26 36 31 29 28 21 31 15 24 32 31 25 34 16 18 21 26 15 9 8 7 28 38 7 8 6 27 21 21 25 14 29 11 32 34 25 14 27 20 15 13 13 9 33 17 22 28 14 10 12 26 14 31 17 24 33 15 37 18 11 43 26 14 18 23 21 21 16 8 4 18 20 32 22 14 10 25 11 29 23 25 10 9 7 9 10 17 33 27 32 15 14 15 27 28 21 13 15 18 19 13 11 24 26 24 21 14 16 16 21 9 11 15 5 6 14 14 23 15 16 16 8 8 19 21 20 24 25 18 27 15 10 15 6 6 26 23 22 17 11 19 28 20 9 13 9 5 5 4 6 16 24 27 7 12 10 9 12 7 21 12 6 20 8 9 13 8 19 2 3 4 4 6 4 11 6 8 1 10 21 4 2 4 12 9 7 7 6 11 8 5 16 6 17 9 23 22 5 7 25 8 6 10 8 17 5 5 5 6 10 6 4 5 2 3 7 8 9 22 4 3 3 2 3 4 7 2 5 5 1 1 3 1 1 7 25 6 6 4 13 5 4 6 11 25 24 7 15 7 5 5 9 5 5 14 6 3 5 1 4 22 6 5 17 8 4 4 6 5 7 4 4 14 6 3 1 4 7	Open. Hide. 62 47 43 47 62 47 47 54 62 62 62 35 62 44 49 62 62 62 62 59 62 62 62 43 59 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 59 59 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 54 62 62 62 62 59 62 62 54 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 54 54 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 58 58 58 58 58 49 58 58 58 58 58 58 58 58 58 58 58 58 58 58 47 58 58 58 58 58 58 54 54 52 54 58 54 58 58 58 58 41 41 47 58 58 49 58 58 58 54 58 46 52 58 58 52 58 47 58 58 58 52 58 58 58 58 58 52 58 58 58 58 58 54 58 51 49 58 58 58 58 46 58 58 53 46 58 49 47 58 58 58 58 58 49 58 58 50 58 58 53 49 44 40 54 58 54 51 29 58 54 58 51 58 58 58 58 58 58 52 53 53 58 47 40 41 41 50 48 50 51 53 54 38 48 42 58 49 50 51 58 58 40 49 50 49 51 54 43 51 58 58 50 49 49 54 43 40 58 50 58 58 51 51 50 58 31 52 32 41 50 53 53 51 50 50 50 47 58 58 37 40 50 39 44 49 54 34 47 53 42 41 35 34 52 41 49 52 35 39 46 53 42 53 38 17 54 49 53 53 43 53 52 50 51 52 50 40 37 46 34 53 53 40 35 32 17 54 54 45 53 45 53 41 31 40 33 31 54 35 37 52 53 37 53 37 29 37 42 45 32 54 44 31 33 26 41 37 25 30 29 54 52 41 52 32 53 41 46 34 51 53 39 35 51 51 47 52 32 53 30 26 45 18 15 11 13 12 18 49 51 53 46 46 25 52 32 45 39 45 49 31 47 31 42 46 51 30 14 9 6 37 34 45 37 51 51 51 36 35 28 38 45 29 46 31 30 26 51 46 34 31 31 42 37 33 35 32 45 38 43 35 43 36 29 31 31 42 24 37 37 32 29 31 36 38 46 31 31 31 37 34 31 31 31 48 31 43 24 30 21 29 21 47 31 42 22 33 46 39 27 29 33 37 27 39 31 30 24 31 31 28 24 9 29 27 31 32 31 31 41 46 48 46 29 35 33 31 31 30 24 36 27 31 27 39 25 34 36 27 48 31 31 35 30 34 31 25 33 30 32 29 13 26 11 30 17 34 20 27 29 23 36 16 30 22 21 23 36 28 44 31 19 22 31 21 24 31 21 32 25 44 48 32 33 33 16 15 34 34 32 19 19 30 21 23 16 6 39 9 12 17 13 12 30 15 11 9 14 21 32 32 17 10 40 47 10 8 17 10 16 32 24 27 23 18 5 17 48 22 15 11 17 29 15 28 16 24 27 7 12 16 15 13 27 13 15 21 16 14 17 10 21 40 27 14 13 32 8 17 10 5 17 29 16 18 22 21 18 8 9 8 9 6 19 6 13 14 13 11 16 8 27 38 12 9 5 7 3 6 7 9 28 13 11 10 7 7 9 27 3 4 5 8 16 25 8 16 27 18 12 21 17 14 13 7 12 6 17 16 10 6 3 3 10 15 13 11 6 5 25 9 16 9 10 12 4 4 3 5 7 10 5 23 25 17 8 11 9 6 5 25 20 15 6 2 3 7 5 10 20 21 5 7 8 7 12 21 8 8 10 5 6 15 9 5 4 2 4 13 8 2 2 5 2 2 2 8 6 3 1 1 4 7 12 6 4 6 3 3 3 1 10 13 16 16 9 8 18 5 5 18 15 16 5 20

Alignment Information

BAC End 1

BAC End 2

seq1: chr11_108486781_108487960
seq2: B6Ng01-335B19.g_65_1256

seq1  GAATTCATTTTGCAGTTGCTAAATGCTGTTTTGTTGTTGTTGTTGTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGCAGTTGCTAAATGCTGTTTTGTTGTTGTTGTTGTTGTT  50

seq1  AGCCAGTGATTGTGGTCTGAGTAATCTCAAGATTTTATTACTTGAATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTGATTGTGGTCTGAGTAATCTCAAGATTTTATTACTTGAATAAG  100

seq1  AAAAGTTATGATAATTAACCAGCTGCAAGCACTTGATATATGATGGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATGATAATTAACCAGCTGCAAGCACTTGATATATGATGGGTGG  150

seq1  GTCCAAATCAGGGACAGAGGTATGAGAATGCCCTGCCCTCACAGCAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAATCAGGGACAGAGGTATGAGAATGCCCTGCCCTCACAGCAGTCT  200

seq1  GTGAGAGGTCGCTAGTTGCCCTTTTGTAGTGAGTGACTCAAAATCAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGTCGCTAGTTGCCCTTTTGTAGTGAGTGACTCAAAATCAGATG  250

seq1  CTGAGAACAGACAGCCACTTTCTGGCAAAGAGCCCACAAGCTCCTGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACAGACAGCCACTTTCTGGCAAAGAGCCCACAAGCTCCTGAGCA  300

seq1  AGGTCTTCAGCAGTAGCTTGTTATCACTGCCCAGGGAGGACGAGTTGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCAGCAGTAGCTTGTTATCACTGCCCAGGGAGGACGAGTTGTGC  350

seq1  ATGTGAGGTTGAACTGTACATGCTATTTGCAGCACCTCATCTACTTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGTTGAACTGTACATGCTATTTGCAGCACCTCATCTACTTCTAG  400

seq1  GAGGCAGCTTCCTTTTATCCAATTTCATTCCTGTTTTTAAAATTATTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCTTCCTTTTATCCAATTTCATTCCTGTTTTTAAAATTATTGAC  450

seq1  TTAGCCTTCTTTTACATTTTTTATTTATTTTAAATGTATGAGTGTTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTTCTTTTACATTTTTTATTTATTTTAAATGTATGAGTGTTTTGC  500

seq1  CTGAATGTATGTGTTCTTCATGTGGAGGTCCGCTGCCCCTAGAGGTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTATGTGTTCTTCATGTGGAGGTCCGCTGCCCCTAGAGGTCAGA  550

seq1  AGACGTCATTGGAGCCCTGGAACTGGAGTTATGTAAGTTGTGAGCTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTCATTGGAGCCCTGGAACTGGAGTTATGTAAGTTGTGAGCTACCA  600

seq1  TGTAGGTGCTGGGAACAGAACCCAGGTCCCGTGCATGAGCAGCAAGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGCTGGGAACAGAACCCAGGTCCCGTGCATGAGCAGCAAGTGCT  650

seq1  CTTAACTGCTGAGCACATGTCTACTTTCCAATCTAGTATTATGACCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGCTGAGCACATGTCTACTTTCCAATCTAGTATTATGACCCTCT  700

seq1  CAAATAGTATAATACCAGGAGATTTTGTGATCAGAATCCTTCTACTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTATAATACCAGGAGATTTTGTGATCAGAATCCTTCTACTCCCA  750

seq1  GTCTAATTTATAGAAGAGACTTTGTTTAGCTACTTTTTTGTTTAGTTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTTATAGAAGAGACTTTGTTTAGCTACTTTTTTGTTTAGTTTAG  800

seq1  CTTTAATTTGTTTTTGTTGTTTCAAAATATGCTGATGTCTCTGAGTCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTTGTTTTTGTTGTTTCAAAATATGCTGATGTCTCTGAGTCTTG  850

seq1  ATTTGCTCTCTTTGGACATTTGTTGGCACCATTCAGTGGTAGTAGTGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCTCTTTGGACATTTGTTGGCACCATTCAGTGGTAGTAGTGGGG  900

seq1  TAAGTGCCATAAGCTCCCTGCTGTCCAGCCTTCCTATCCAATATTAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCCATAAGCTCCCTGCTGTCCAGCCTTCCTATCCAATATTAAATA  950

seq1  ATTAGATTTTCCACTTCTACTGTTAACAGTGC-TATGCT-AAATAATAGT  998
      ||||||||||||||||||||||| |||||||| |||||| ||||||||||
seq2  ATTAGATTTTCCACTTCTACTGTAAACAGTGCTTATGCTAAAATAATAGT  1000

seq1  CCTAAACTTGTGTATCTTGTTCTGGTAACTTTA-GGCCA-TTACTA--GA  1044
      |||||||||||||||| |||||||||||||||| ||||| ||||||   |
seq2  CCTAAACTTGTGTATC-TGTTCTGGTAACTTTAGGGCCATTTACTAAGAA  1049

seq1  GGTCCTTG-TTTCTATCCAGGTTGAGGATA--GGAAAGCTATTCTTTGTT  1091
      |||||||| |||||||| ||||||  ||||  |||||||||||| ||| |
seq2  GGTCCTTGTTTTCTATCAAGGTTGGAGATAAGGGAAAGCTATTCCTTGGT  1099

seq1  TCTTG-ATTCTCTTCTGTGT-GGTCACTTTCAGTGTGG--ATGTCG-ATA  1136
      ||||| ||||||| |||||| |||||||||||||||||  |||||| |||
seq2  TCTTGAATTCTCTCCTGTGTGGGTCACTTTCAGTGTGGGAATGTCGAATA  1149

seq1  ACAGTTACACTTTACTTTGCACTCACAGTGGAAGCATT-ATTACT  1180
      ||||||| ||  ||||| | ||||  |||||||||||| ||||||
seq2  ACAGTTA-AC-GTACTTGGAACTCCAAGTGGAAGCATTAATTACT  1192

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information