BAC Information

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BAC

Clone NameB6Ng01-335G06
Chromosome11 (Build37)
Map Location 96,166,275 - 96,331,966
singlet/doubletdoublet
Overlap geneHoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1
Upstream geneMyst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6
Downstream geneSnx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335G06.bB6Ng01-335G06.g
ACCGA120636GA120637
length1,068894
definitionB6Ng01-335G06.b B6Ng01-335G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,330,842 - 96,331,966)(96,166,275 - 96,167,168)
sequence
gaattccaggacagatagggctatacaaagaaatcctgtctctggaaaac
aaaaacaaaacaaaacaaaacaaaaaacaacaacaaacaaaaacagagag
agagaactattgctgaagacctaagaggaaatgaaaccgagctactgtct
tattcctagagttatttttaaatcaatcgagagattattgagccaggtga
ggttcacacacctttaatcccagcccctgggaggcagagacaaaggcagg
tggatctctgtgagctggaggccagactggtctacatgctgagttcaagg
ccagccagggctacacagtgagacactgtctcaataaaatatttcctaat
gctcactttgatattttcttatagaaacaatgttatatcaccagcaatct
caaaagaaatccatgaaacccatggaaatgtaacaattgttgacaagggc
aactgtgtactctatcttttctgctttcaattacgaaaattatcaccttt
ttccgatctttattttttattaaattattttatttattcacattccaaat
gttgcccccttcccagtcccccctcccagagtgaagacctgatccttttt
cccttctaagagggtgctctcctacccacccatccccatctcaccccccc
cccccagcatccttgatccctggagcatcaagttatcacgtttttagtca
gaaaaaaaataacattaaagctcacactttaccacttgggattcaggaga
gcagtaactcacctgtcagcaagaccaccaatatcaaaagttagccaaaa
agaggcagagcagccaaacacacaccacaaaaccatgcctcagagcttag
gtatttgtttatcaagacagccgctttggactgtcaagatggctcaaggg
taaaggtgcttgcaaccggggcttaggatgtaagttcaattgctggaacc
catccacatggtaagacagaaaaaaagcttcttcacacacacacacacac
acacacacacacactactcacacatcacattacacacacactcacaccag
actacactcatcacacac
gaattccacttcaatcgctacctgacccggcggcgacgtatcgagatcgc
ccacgcgctttgcctgtccgagcgtcagatcaaaatctggttccagaacc
gtcgcatgaagtggaagaaagacaacaaactgaaaagtatgagtctggct
acagccggcagcgccttccaaccttgagcccatccggaggagccctgggc
ggcccgagagcccgcaccaaccccagctcgacccttccaatcttccctgc
actgccgctgcccgctggggaccagttcccacgagcctgtcacaccccag
tcctgtgttacaatttttcgtttggtcttaggtcttcccatggctccctc
tctcctggactggttatcttgttattattgttaataataattattattat
tatttccccctccgtgctccccacttctcttggctcgcccccccccaagt
tgccagtgtttctgaatgtcctcgtgtctgtggttgcgctcctttcccca
ggaaaaagaaaagaaaaagaaattcgcatgtttaatgtgacttcccctcc
ccgtctgtgttctaacttatttataaaaggatgatggctgtattttgagt
ttctgctggaaacttccataaggggcagcagttgaggttgggtagtgctg
ggcccagctgagctggcctgggaaatggagcccactgtctgtgtctcttt
tctcccacctcatccttcttcagccccacccagcccccactccctaggct
caggtagcttgttccttggggtgggaagggagctagggaagggtcaaagt
gtggacattgagaagaggagaggaaaggagcaagagctgaactcctgctg
tcttggtaggccccacaagcctagtctggaagcgtatggaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_96330842_96331966
seq2: B6Ng01-335G06.b_50_1117 (reverse)

seq1  GTGTGTGTGTGTGTGTGTGTGTGTATATGTGGTGTGTGTGTGTGTGTGTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TATATGTGGTGTGTGTGTG-TGTGTGT-GTGTGGTGTGTGTGTGTGTGT-  97
                  ||||||| || |||| || ||||||| |||||||||| 
seq2  ------------GTGTGTGATGAGTGTAGTCTGGTGTGAGTGTGTGTGTA  38

seq1  ATGTGGTGTGTGTGT-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAG  146
      ||||| |||||| || ||||||||||||||||||||||||||||||  ||
seq2  ATGTGATGTGTGAGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAG  88

seq1  AGGC-TTTTTTCTGTC-TACCATGTGGATGGGTTCCAGCAATTGAACTTA  194
      | || ||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGCTTTTTTTCTGTCTTACCATGTGGATGGGTTCCAGCAATTGAACTTA  138

seq1  CATCCTAAGCCCCGGTTGCAAGCACCTTTACCCTTTGAGCCATCTTGACA  244
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATCCTAAGCCCCGGTTGCAAGCACCTTTACCC-TTGAGCCATCTTGACA  187

seq1  GTCCAAAGCGGCTGTCTTGATAAACAAATACCTAAGCTCTGAGGCATGGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAGCGGCTGTCTTGATAAACAAATACCTAAGCTCTGAGGCATGGT  237

seq1  TTTGTGGTGTGTGTTTGGCTGCTCTGCCTCTTTTTGGCTAACTTTTGATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTGTGTGTTTGGCTGCTCTGCCTCTTTTTGGCTAACTTTTGATA  287

seq1  TTGGTGGTCTTGCTGACAGGTGAGTTACTGCTCTCCTGAATCCCAAGTGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGTCTTGCTGACAGGTGAGTTACTGCTCTCCTGAATCCCAAGTGG  337

seq1  TAAAGTGTGAGCTTTAATGTTATTTTTTTTCTGACTAAAAACGTGATAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTGAGCTTTAATGTTATTTTTTTTCTGACTAAAAACGTGATAAC  387

seq1  TTGATGCTCCAGGGATCAAGGATGCTGGGGGGGGGGGGTGAGATGGGGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTCCAGGGATCAAGGATGCTGGGGGGGGGGGGTGAGATGGGGAT  437

seq1  GGGTGGGTAGGAGAGCACCCTCTTAGAAGGGAAAAAGGATCAGGTCTTCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTAGGAGAGCACCCTCTTAGAAGGGAAAAAGGATCAGGTCTTCA  487

seq1  CTCTGGGAGGGGGGACTGGGAAGGGGGCAACATTTGGAATGTGAATAAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGAGGGGGGACTGGGAAGGGGGCAACATTTGGAATGTGAATAAAT  537

seq1  AAAATAATTTAATAAAAAATAAAGATCGGAAAAAGGTGATAATTTTCGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTAATAAAAAATAAAGATCGGAAAAAGGTGATAATTTTCGTA  587

seq1  ATTGAAAGCAGAAAAGATAGAGTACACAGTTGCCCTTGTCAACAATTGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGCAGAAAAGATAGAGTACACAGTTGCCCTTGTCAACAATTGTT  637

seq1  ACATTTCCATGGGTTTCATGGATTTCTTTTGAGATTGCTGGTGATATAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCATGGGTTTCATGGATTTCTTTTGAGATTGCTGGTGATATAAC  687

seq1  ATTGTTTCTATAAGAAAATATCAAAGTGAGCATTAGGAAATATTTTATTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCTATAAGAAAATATCAAAGTGAGCATTAGGAAATATTTTATTG  737

seq1  AGACAGTGTCTCACTGTGTAGCCCTGGCTGGCCTTGAACTCAGCATGTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGTCTCACTGTGTAGCCCTGGCTGGCCTTGAACTCAGCATGTAG  787

seq1  ACCAGTCTGGCCTCCAGCTCACAGAGATCCACCTGCCTTTGTCTCTGCCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTGGCCTCCAGCTCACAGAGATCCACCTGCCTTTGTCTCTGCCT  837

seq1  CCCAGGGGCTGGGATTAAAGGTGTGTGAACCTCACCTGGCTCAATAATCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGCTGGGATTAAAGGTGTGTGAACCTCACCTGGCTCAATAATCT  887

seq1  CTCGATTGATTTAAAAATAACTCTAGGAATAAGACAGTAGCTCGGTTTCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATTGATTTAAAAATAACTCTAGGAATAAGACAGTAGCTCGGTTTCA  937

seq1  TTTCCTCTTAGGTCTTCAGCAATAGTTCTCTCTCTCTGTTTTTGTTTGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTAGGTCTTCAGCAATAGTTCTCTCTCTCTGTTTTTGTTTGTT  987

seq1  GTTGTTTTTTGTTTTGTTTTGTTTTGTTTTTGTTTTCCAGAGACAGGATT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTTTGTTTTGTTTTGTTTTGTTTTTGTTTTCCAGAGACAGGATT  1037

seq1  TCTTTGTATAGCCCTATCTGTCCTGGAATTC  1125
      |||||||||||||||||||||||||||||||
seq2  TCTTTGTATAGCCCTATCTGTCCTGGAATTC  1068

seq1: chr11_96166275_96167168
seq2: B6Ng01-335G06.g_68_961

seq1  GAATTCCACTTCAATCGCTACCTGACCCGGCGGCGACGTATCGAGATCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCAATCGCTACCTGACCCGGCGGCGACGTATCGAGATCGC  50

seq1  CCACGCGCTTTGCCTGTCCGAGCGTCAGATCAAAATCTGGTTCCAGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCGCTTTGCCTGTCCGAGCGTCAGATCAAAATCTGGTTCCAGAACC  100

seq1  GTCGCATGAAGTGGAAGAAAGACAACAAACTGAAAAGTATGAGTCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCATGAAGTGGAAGAAAGACAACAAACTGAAAAGTATGAGTCTGGCT  150

seq1  ACAGCCGGCAGCGCCTTCCAACCTTGAGCCCATCCGGAGGAGCCCTGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCGGCAGCGCCTTCCAACCTTGAGCCCATCCGGAGGAGCCCTGGGC  200

seq1  GGCCCGAGAGCCCGCACCAACCCCAGCTCGACCCTTCCAATCTTCCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGAGAGCCCGCACCAACCCCAGCTCGACCCTTCCAATCTTCCCTGC  250

seq1  ACTGCCGCTGCCCGCTGGGGACCAGTTCCCACGAGCCTGTCACACCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCGCTGCCCGCTGGGGACCAGTTCCCACGAGCCTGTCACACCCCAG  300

seq1  TCCTGTGTTACAATTTTTCGTTTGGTCTTAGGTCTTCCCATGGCTCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTACAATTTTTCGTTTGGTCTTAGGTCTTCCCATGGCTCCCTC  350

seq1  TCTCCTGGACTGGTTATCTTGTTATTATTGTTAATAATAATTATTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGGACTGGTTATCTTGTTATTATTGTTAATAATAATTATTATTAT  400

seq1  TATTTCCCCCTCCGTGCTCCCCACTTCTCTTGGCTCGCCCCCCCCCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCCCTCCGTGCTCCCCACTTCTCTTGGCTCGCCCCCCCCCAAGT  450

seq1  TGCCAGTGTTTCTGAATGTCCTCGTGTCTGTGGTTGCGCTCCTTTCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGTTTCTGAATGTCCTCGTGTCTGTGGTTGCGCTCCTTTCCCCA  500

seq1  GGAAAAAGAAAAGAAAAAGAAATTCGCATGTTTAATGTGACTTCCCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAAAAGAAAAAGAAATTCGCATGTTTAATGTGACTTCCCCTCC  550

seq1  CCGTCTGTGTTCTAACTTATTTATAAAAGGATGATGGCTGTATTTTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTGTGTTCTAACTTATTTATAAAAGGATGATGGCTGTATTTTGAGT  600

seq1  TTCTGCTGGAAACTTCCATAAGGGGCAGCAGTTGAGGTTGGGTAGTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGGAAACTTCCATAAGGGGCAGCAGTTGAGGTTGGGTAGTGCTG  650

seq1  GGCCCAGCTGAGCTGGCCTGGGAAATGGAGCCCACTGTCTGTGTCTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCTGAGCTGGCCTGGGAAATGGAGCCCACTGTCTGTGTCTCTTT  700

seq1  TCTCCCACCTCATCCTTCTTCAGCCCCACCCAGCCCCCACTCCCTAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACCTCATCCTTCTTCAGCCCCACCCAGCCCCCACTCCCTAGGCT  750

seq1  CAGGTAGCTTGTTCCTTGGGGTGGGAAGGGAGCTAGGGAAGGGTCAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCTTGTTCCTTGGGGTGGGAAGGGAGCTAGGGAAGGGTCAAAGT  800

seq1  GTGGACATTGAGAAGAGGAGAGGAAAGGAGCAAGAGCTGAACTCCTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACATTGAGAAGAGGAGAGGAAAGGAGCAAGAGCTGAACTCCTGCTG  850

seq1  -CCTGGTAGGCCCCACAAGGCCTAGTCTGGAAGCGTATGGAATCA  894
       | ||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTTGGTAGGCCCCACAA-GCCTAGTCTGGAAGCGTATGGAATCA  894