BAC Information

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BAC

Clone NameB6Ng01-335I08
Chromosome11 (Build37)
Map Location 4,278,244 - 4,435,563
singlet/doubletdoublet
Overlap geneHormad2, Mtmr3
Upstream geneLimk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif
Downstream geneLOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335I08.bB6Ng01-335I08.g
ACCGA120721GA120722
length748864
definitionB6Ng01-335I08.b B6Ng01-335I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,278,244 - 4,278,991)(4,434,708 - 4,435,563)
sequence
gaattcacagatctaaatccaagtatgagattaggagtcttttaacataa
atctgtcctcagcctactggtcatgaatagttcttacatcttacccattt
tggcatagcaataaatataaccttggcaatcattttggtaattttgccaa
ttttgcataagtcaattaagctctgtctgacctggacccttctgtaataa
ggaacagtattaggagagctggggaaactggggtggagtctaagggccac
attacagttattctacaagtttatcctagcacggatggttgtactgtcac
tatggaggtgaatggttttatttctaggaattgcttaagttttctaggat
aatgaagcaacttgttcagggaaaaaaaaaatctgatttgtgctgaacct
gcagatttttctgcaaacctggcattatttcaaaataaaagtaaacatat
aaaaatgttgatttttaggaaaatattttaaggaaaaggacttagcattt
tctgctatatacatattttaaataaatattttgggaggcactaacttgtc
tctaacctacctacgactgctctgtgatgagtaagtgaggtgtcaaaagc
actgtgccagggacaggagatgaaaaagaatgggaagaaatcagaaggat
gtcaggtcacagtctgggctggagcctatcagggactcttcctcctcctc
ctcctcttcctcctcctcctccttcctcttcttcctccacctcctcct
gaattcctatagagactttgttttcttggttgattaaaacagcacatgtg
ccgggcgtggtggcacatgtctttaatcccaccacttgggaggcagaggc
aggcagatttctgagttcagttcaaggccagcctggtctacaaagtgagt
tccaggacagccagggctacatagagaaaccctgtctcgaaaacccctca
aaaccccaaaaacaacaacaacaacaacaacaacaaaaaaaaccagcaca
tgttttgggaccctctcctctagtggtagagattgaaactggtacttcat
gcctgctaagtgaaagacccccaaaaggataccctcactcaagtctcggg
ataatagtggaaccccaagaactcatgagagaccaagcttgatgcaaacc
acatgaggctttattcggggaaagccagagctctggggacgactcatatc
ccacgcaggggtagaggagtccacccagaggggaaaggggtcccagtttt
tataggccctcaggggggaaaggagaaggggaaagagtaggggatttcca
gatctaaacaatatctattctcaagaaataggtatgggaggggtacaagg
aaagagtctggtgcaggtgcagcaactccggattggccccagctgtggtt
gctggggaaattttccgactcttccccagcaacgaatatcacaaacacct
ggcagtgaggtgcagcagtgggcacacacctggggatgaaaggcgtgcgc
caccatgcgggctcttttctgtctattttattggagtatagtcttccctg
aatgcaggattctaacacacctgggcattccttgttagacattaggggag
gagaagggggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_4278244_4278991
seq2: B6Ng01-335I08.b_44_791

seq1  GAATTCACAGATCTAAATCCAAGTATGAGATTAGGAGTCTTTTAACATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGATCTAAATCCAAGTATGAGATTAGGAGTCTTTTAACATAA  50

seq1  ATCTGTCCTCAGCCTACTGGTCATGAATAGTTCTTACATCTTACCCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCCTCAGCCTACTGGTCATGAATAGTTCTTACATCTTACCCATTT  100

seq1  TGGCATAGCAATAAATATAACCTTGGCAATCATTTTGGTAATTTTGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAGCAATAAATATAACCTTGGCAATCATTTTGGTAATTTTGCCAA  150

seq1  TTTTGCATAAGTCAATTAAGCTCTGTCTGACCTGGACCCTTCTGTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCATAAGTCAATTAAGCTCTGTCTGACCTGGACCCTTCTGTAATAA  200

seq1  GGAACAGTATTAGGAGAGCTGGGGAAACTGGGGTGGAGTCTAAGGGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGTATTAGGAGAGCTGGGGAAACTGGGGTGGAGTCTAAGGGCCAC  250

seq1  ATTACAGTTATTCTACAAGTTTATCCTAGCACGGATGGTTGTACTGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTTATTCTACAAGTTTATCCTAGCACGGATGGTTGTACTGTCAC  300

seq1  TATGGAGGTGAATGGTTTTATTTCTAGGAATTGCTTAAGTTTTCTAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGGTGAATGGTTTTATTTCTAGGAATTGCTTAAGTTTTCTAGGAT  350

seq1  AATGAAGCAACTTGTTCAGGGAAAAAAAAAATCTGATTTGTGCTGAACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCAACTTGTTCAGGGAAAAAAAAAATCTGATTTGTGCTGAACCT  400

seq1  GCAGATTTTTCTGCAAACCTGGCATTATTTCAAAATAAAAGTAAACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTTTCTGCAAACCTGGCATTATTTCAAAATAAAAGTAAACATAT  450

seq1  AAAAATGTTGATTTTTAGGAAAATATTTTAAGGAAAAGGACTTAGCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTGATTTTTAGGAAAATATTTTAAGGAAAAGGACTTAGCATTT  500

seq1  TCTGCTATATACATATTTTAAATAAATATTTTGGGAGGCACTAACTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATATACATATTTTAAATAAATATTTTGGGAGGCACTAACTTGTC  550

seq1  TCTAACCTACCTACGACTGCTCTGTGATGAGTAAGTGAGGTGTCAAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCTACCTACGACTGCTCTGTGATGAGTAAGTGAGGTGTCAAAAGC  600

seq1  ACTGTGCCAGGGACAGGAGATGAAAAAGAATGGGAAGAAATCAGAAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCCAGGGACAGGAGATGAAAAAGAATGGGAAGAAATCAGAAGGAT  650

seq1  GTCAGGTCACAGTCTGGGCTGGAGCCTATCAGGGACTCTTCCTCCTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTCACAGTCTGGGCTGGAGCCTATCAGGGACTCTTCCTCCTCCTC  700

seq1  CTCCTCTTCCTCCTCCTCCTCCTTCCTCTTCTTCCTCCTCCTCCTCCT  748
      |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCCTCTTCCTCCTCCTCCTCCTTCCTCTTCTTCCTCCACCTCCTCCT  748

seq1: chr11_4434708_4435563
seq2: B6Ng01-335I08.g_66_929 (reverse)

seq1  TTCCCCCCC-TCT-CTCCCCT-ATGTCTAACA--GGATGCC--AGTGTGT  43
      ||||||||| ||| ||||||| ||||||||||  | |||||   ||||||
seq2  TTCCCCCCCTTCTCCTCCCCTAATGTCTAACAAGGAATGCCCAGGTGTGT  50

seq1  TAG-ATCCTGCATTCAGGG-AGACTATACTCCAATAAAATAGACAGAAAA  91
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGAATCCTGCATTCAGGGAAGACTATACTCCAATAAAATAGACAGAAAA  100

seq1  GAGCCCGGCATGGTGGCGCACGCCTTTCATCCCCAGGTGTGTGCCCACTG  141
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCC-GCATGGTGGCGCACGCCTTTCATCCCCAGGTGTGTGCCCACTG  149

seq1  CTGCACCTCACTGCCAGGTGTTTGTGATATTCGTTGCTGGGGAAGAGTCG  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTCACTGCCAGGTGTTTGTGATATTCGTTGCTGGGGAAGAGTCG  199

seq1  GAAAATTTCCCCAGCAACCACAGCTGGGGCCAATCCGGAGTTGCTGCACC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTCCCCAGCAACCACAGCTGGGGCCAATCCGGAGTTGCTGCACC  249

seq1  TGCACCAGACTCTTTCCTTGTACCCCTCCCATACCTATTTCTTGAGAATA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAGACTCTTTCCTTGTACCCCTCCCATACCTATTTCTTGAGAATA  299

seq1  GATATTGTTTAGATCTGGAAATCCCCTACTCTTTCCCCTTCTCCTTTCCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTTTAGATCTGGAAATCCCCTACTCTTTCCCCTTCTCCTTTCCC  349

seq1  CCCTGAGGGCCTATAAAAACTGGGACCCCTTTCCCCTCTGGGTGGACTCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGGGCCTATAAAAACTGGGACCCCTTTCCCCTCTGGGTGGACTCC  399

seq1  TCTACCCCTGCGTGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCCG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCCTGCGTGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCCG  449

seq1  AATAAAGCCTCATGTGGTTTGCATCAAGCTTGGTCTCTCATGAGTTCTTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCCTCATGTGGTTTGCATCAAGCTTGGTCTCTCATGAGTTCTTG  499

seq1  GGGTTCCACTATTATCCCGAGACTTGAGTGAGGGTATCCTTTTGGGGGTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCACTATTATCCCGAGACTTGAGTGAGGGTATCCTTTTGGGGGTC  549

seq1  TTTCACTTAGCAGGCATGAAGTACCAGTTTCAATCTCTACCACTAGAGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTAGCAGGCATGAAGTACCAGTTTCAATCTCTACCACTAGAGGA  599

seq1  GAGGGTCCCAAAACATGTGCTGGTTTTTTTTGTTGTTGTTGTTGTTGTTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCCCAAAACATGTGCTGGTTTTTTTTGTTGTTGTTGTTGTTGTTG  649

seq1  TTGTTTTTGGGGTTTTGAGGGGTTTTCGAGACAGGGTTTCTCTATGTAGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGGGGTTTTGAGGGGTTTTCGAGACAGGGTTTCTCTATGTAGC  699

seq1  CCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTGAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTGAA  749

seq1  CTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGGTGGGATTAAAGACATG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGGTGGGATTAAAGACATG  799

seq1  TGCCACCACGCCCGGCACATGTGCTGTTTTAATCAACCAAGAAAACAAAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCACGCCCGGCACATGTGCTGTTTTAATCAACCAAGAAAACAAAG  849

seq1  TCTCTATAGGAATTC  856
      |||||||||||||||
seq2  TCTCTATAGGAATTC  864