BAC Information

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BAC

Clone NameB6Ng01-335I16
Chromosome11 (Build37)
Map Location 80,088,164 - 80,211,430
singlet/doubletdoublet
Overlap geneRhbdl3, 5730455P16Rik, Zfp207
Upstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1
Downstream geneLOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335I16.bB6Ng01-335I16.g
ACCGA120733GA120734
length1,1721,110
definitionB6Ng01-335I16.b B6Ng01-335I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,210,246 - 80,211,430)(80,088,164 - 80,089,277)
sequence
gaattcaagtataaaccaaatttgttacacttgtgatttaaccgcactat
ggaccccagaagcaattaggtaagcagtactttctagaagtttaattatt
cttgatgcatgcaaaaattatactttcaacaacatagtaaatggacccca
ctcctgaggcacaaattatatttcattagagtaccttatgttacaaactt
ttagaatattaggattcttttacttttaagttgtagacttcaaagaataa
ggcctgctatcttgtgctttgaacaaaatataaatgtaagctttgcataa
ttcttaaaagttctatcaatacttcagttgtctgataatcaaattcatga
aattctgaaatgttctgttttaaaagaaagcatttctaaatgtaatcttg
ccatctttttaaaaggttttttgcttgtttttttttggacaggatttctt
tgggtagccctcactgctctggaacttactctgtagcactggatggcctt
cctacaattcaaggagaaatgcacttgtctctgtatgcatcaccactgac
aaactaaactttaatattttcaataaagggttttctttggcagtgctgct
agtctaagaaactttaattaactagagaggtaatcaggatgaagaagtga
aggctaatttagcagctggcaggaactcatttctggtatatatgaatatt
ttcattacaaactggaactttctgtgtaccagtaactacagcagaggcgg
cacacaatcagtgcagtaaatatcagactaaaaaatgacattcagattta
aattgtcatatttcagaatgaactttacttgttctaactttcctctgtta
acaagccaaaaatattttcaatataaattcctacaaaattaaaggtaact
tatattgtcacatcatttatctaatacccttcctagaactattaaagaca
gcatttgctcagaatttgttaaatcaaatcaacccatattcgttctatgg
gtatttactttgtacagatcacctgatacttaactgaccataaacctacc
caagctcatgtgcccccaccagaaaaagattgtccacaacgctgtagacg
actacggtgagacatcacacaaattccccatgttaggtatcacctacgta
aagtcctacagaccagcaatat
gaattcacaggttgagagctgccgtatcccgtgtgcctcacaaccaccat
ctttctactaccatccgtccattcttctacttgtcctaccctgcttcata
agcctgactcggttgctctttgcttgcttctctgcgcctactgtttctgg
cccgtggtatacctacctatttcagagctgctttctgcttgtaacgcatt
tcaagaaagctactttgtgcttgtcacccatatcctggttttatgtatca
gccccttgagtggagacttcccagacagtctaatctgaggaaaccacctg
gaagctcttccatgtgtccacctaccagcctgctttctccctttattttt
ttttttaagttggaggtagtagtgcatgcctttaatccctcaggaagcag
aggcagggggaatctctgagttcaaggccaacctggtctatagggtgagt
tccaggacagccagggctatacagagaaaccctttcttgaaaacccagaa
aaaaatgttttcttaagtctataggtactttgtctgcatgtctttttact
ctgtgtgtgtgtgtgttaccctcagaagccaaaagagggcgccagatccc
ctagaattggagttacatgtggttatgaactgtagtgtggatgttgagaa
ttgagccagggtcctctggaaaagcagccagtctcgtaatcactgagccg
tgtctccagctccccccttccttttttatatatatttcttcatttgttga
aggtcaccttcctgtttggatgtgagccttgtaagagtagggctttgttt
gacttaatctccgctttgtattcagtccagaaaataataattggcaggca
gtacccaataaaaaaatttttcaattagtgagtgaagaaataaaacaact
tcaagctgtttgtcctagaaaactcagatgttcagtgcagcttactggac
ctggaggtggggggtgattaaaggaaaccaaatatttccctgcagaggtt
ggcagcagtgactagctgttggggagggggaagatcaaaacaaaccaagg
cagaggactgggacttgggcctgctccgaatcatttgctccgactcctgt
tgagttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_80210246_80211430
seq2: B6Ng01-335I16.b_53_1224 (reverse)

seq1  ATATTGCTGTGTCCTGTAGGAAATTTTACTGTAGGGGTGATTACCTACCA  50
      ||||||||| || |||||||  | ||||| |||  ||||| |||||| ||
seq2  ATATTGCTG-GT-CTGTAGG--ACTTTAC-GTA--GGTGA-TACCTAACA  42

seq1  TTGGGGAATTTGTGTTGGATGTCTCACCGTAGTCGTTCTTACAGCGTTTG  100
       ||||||||||||||  |||||||||||||||||||   ||||||| |||
seq2  -TGGGGAATTTGTGT--GATGTCTCACCGTAGTCGT--CTACAGCG-TTG  86

seq1  TGGAC-ATC-TTTTCTGGGTTGGGGGCACATGAGGCTTGGGTAGGTTTAT  148
      ||||| ||| ||||||||  ||||||||||||| ||||||||||||||||
seq2  TGGACAATCTTTTTCTGG--TGGGGGCACATGA-GCTTGGGTAGGTTTAT  133

seq1  GGTCAGTTAAGTATCAGGTGATCTGTACAAAGTAATTACCCATAGAACGA  198
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGTCAGTTAAGTATCAGGTGATCTGTACAAAGTAAATACCCATAGAACGA  183

seq1  ATATGGGTTGATTTGATTTAAC-AATTCTGAGCAAATGCTGTCTTTAATA  247
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATATGGGTTGATTTGATTTAACAAATTCTGAGCAAATGCTGTCTTTAATA  233

seq1  GTTCTAGGAAGGGTATTAGATAAATGATGTGACAATATAAGTTACC-TTA  296
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTCTAGGAAGGGTATTAGATAAATGATGTGACAATATAAGTTACCTTTA  283

seq1  ATTTTGTAGGAATTTATATTGAAAATATTTTTGGCTTGTTAACAGAGGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAGGAATTTATATTGAAAATATTTTTGGCTTGTTAACAGAGGAA  333

seq1  AGTTAGAACAAGTAAAGTTCATTCTGAAATATGACAATTTAAATCTGAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAACAAGTAAAGTTCATTCTGAAATATGACAATTTAAATCTGAAT  383

seq1  GTCATTTTTTAGTCTGATATTTACTGCACTGATTGTGTGCCGCCTCTGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTTTAGTCTGATATTTACTGCACTGATTGTGTGCCGCCTCTGCT  433

seq1  GTAGTTACTGGTACACAGAAAGTTCCAGTTTGTAATGAAAATATTCATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTACTGGTACACAGAAAGTTCCAGTTTGTAATGAAAATATTCATAT  483

seq1  ATACCAGAAATGAGTTCCTGCCAGCTGCTAAATTAGCCTTCACTTCTTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGAAATGAGTTCCTGCCAGCTGCTAAATTAGCCTTCACTTCTTCA  533

seq1  TCCTGATTACCTCTCTAGTTAATTAAAGTTTCTTAGACTAGCAGCACTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTACCTCTCTAGTTAATTAAAGTTTCTTAGACTAGCAGCACTGC  583

seq1  CAAAGAAAACCCTTTATTGAAAATATTAAAGTTTAGTTTGTCAGTGGTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAACCCTTTATTGAAAATATTAAAGTTTAGTTTGTCAGTGGTGA  633

seq1  TGCATACAGAGACAAGTGCATTTCTCCTTGAATTGTAGGAAGGCCATCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACAGAGACAAGTGCATTTCTCCTTGAATTGTAGGAAGGCCATCCA  683

seq1  GTGCTACAGAGTAAGTTCCAGAGCAGTGAGGGCTACCCAAAGAAATCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACAGAGTAAGTTCCAGAGCAGTGAGGGCTACCCAAAGAAATCCTG  733

seq1  TCCAAAAAAAAACAAGCAAAAAACCTTTTAAAAAGATGGCAAGATTACAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAAAAAACAAGCAAAAAACCTTTTAAAAAGATGGCAAGATTACAT  783

seq1  TTAGAAATGCTTTCTTTTAAAACAGAACATTTCAGAATTTCATGAATTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATGCTTTCTTTTAAAACAGAACATTTCAGAATTTCATGAATTTG  833

seq1  ATTATCAGACAACTGAAGTATTGATAGAACTTTTAAGAATTATGCAAAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGACAACTGAAGTATTGATAGAACTTTTAAGAATTATGCAAAGC  883

seq1  TTACATTTATATTTTGTTCAAAGCACAAGATAGCAGGCCTTATTCTTTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTATATTTTGTTCAAAGCACAAGATAGCAGGCCTTATTCTTTGA  933

seq1  AGTCTACAACTTAAAAGTAAAAGAATCCTAATATTCTAAAAGTTTGTAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACAACTTAAAAGTAAAAGAATCCTAATATTCTAAAAGTTTGTAAC  983

seq1  ATAAGGTACTCTAATGAAATATAATTTGTGCCTCAGGAGTGGGGTCCATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGTACTCTAATGAAATATAATTTGTGCCTCAGGAGTGGGGTCCATT  1033

seq1  TACTATGTTGTTGAAAGTATAATTTTTGCATGCATCAAGAATAATTAAAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTTGTTGAAAGTATAATTTTTGCATGCATCAAGAATAATTAAAC  1083

seq1  TTCTAGAAAGTACTGCTTACCTAATTGCTTCTGGGGTCCATAGTGCGGTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAAAGTACTGCTTACCTAATTGCTTCTGGGGTCCATAGTGCGGTT  1133

seq1  AAATCACAAGTGTAACAAATTTGGTTTATACTTGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAAGTGTAACAAATTTGGTTTATACTTGAATTC  1172

seq1: chr11_80088164_80089277
seq2: B6Ng01-335I16.g_65_1174

seq1  GAATTCACAGGTTGAGAGCTGCCGTATCCCGTGTGCCTCACAACCACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTTGAGAGCTGCCGTATCCCGTGTGCCTCACAACCACCAT  50

seq1  CTTTCTACTACCATCCGTCCATTCTTCTACTTGTCCTACCCTGCTTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACTACCATCCGTCCATTCTTCTACTTGTCCTACCCTGCTTCATA  100

seq1  AGCCTGACTCGGTTGCTCTTTGCTTGCTTCTCTGCGCCTACTGTTTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGACTCGGTTGCTCTTTGCTTGCTTCTCTGCGCCTACTGTTTCTGG  150

seq1  CCCGTGGTATACCTACCTATTTCAGAGCTGCTTTCTGCTTGTAACGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGGTATACCTACCTATTTCAGAGCTGCTTTCTGCTTGTAACGCATT  200

seq1  TCAAGAAAGCTACTTTGTGCTTGTCACCCATATCCTGGTTTTATGTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAAGCTACTTTGTGCTTGTCACCCATATCCTGGTTTTATGTATCA  250

seq1  GCCCCTTGAGTGGAGACTTCCCAGACAGTCTAATCTGAGGAAACCACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTGAGTGGAGACTTCCCAGACAGTCTAATCTGAGGAAACCACCTG  300

seq1  GAAGCTCTTCCATGTGTCCACCTACCAGCCTGCTTTCTCCCTTTATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCTTCCATGTGTCCACCTACCAGCCTGCTTTCTCCCTTTATTTTT  350

seq1  TTTTTTAAGTTGGAGGTAGTAGTGCATGCCTTTAATCCCTCAGGAAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTTGGAGGTAGTAGTGCATGCCTTTAATCCCTCAGGAAGCAG  400

seq1  AGGCAGGGGGAATCTCTGAGTTCAAGGCCAACCTGGTCTATAGGGTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGGGAATCTCTGAGTTCAAGGCCAACCTGGTCTATAGGGTGAGT  450

seq1  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTTTCTTGAAAACCCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTTTCTTGAAAACCCAGAA  500

seq1  AAAAATGTTTTCTTAAGTCTATAGGTACTTTGTCTGCATGTCTTTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTTTCTTAAGTCTATAGGTACTTTGTCTGCATGTCTTTTTACT  550

seq1  CTGTGTGTGTGTGTGTTACCCTCAGAAGCCAAAAGAGGGCGCCAGATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTGTGTGTTACCCTCAGAAGCCAAAAGAGGGCGCCAGATCCC  600

seq1  CTAGAATTGGAGTTACATGTGGTTATGAACTGTAGTGTGGATGTTGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTGGAGTTACATGTGGTTATGAACTGTAGTGTGGATGTTGAGAA  650

seq1  TTGAGCCAGGGTCCTCTGGAAAAGCAGCCAGTCTCGTAATCACTGAGCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAGGGTCCTCTGGAAAAGCAGCCAGTCTCGTAATCACTGAGCCG  700

seq1  TGTCTCCAGCTCCCCCCTTCCTTTTTTATATATATTTCTTCATTTGTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAGCTCCCCCCTTCCTTTTTTATATATATTTCTTCATTTGTTGA  750

seq1  AGGTCACCTTCCTGTTTGGATGTGAGCCTTGTAAGAGTAGGGCTTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACCTTCCTGTTTGGATGTGAGCCTTGTAAGAGTAGGGCTTTGTTT  800

seq1  GACTTAATCTCCGCTTTGTATTCAGTCCAGAAAATAATAATTGGCAGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATCTCCGCTTTGTATTCAGTCCAGAAAATAATAATTGGCAGGCA  850

seq1  GTACCCAATAAAAAAATTTTTCAATTAGTGAGTGAAGAAATAAAACAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCAATAAAAAAATTTTTCAATTAGTGAGTGAAGAAATAAAACAACT  900

seq1  TCAAGCTGTTTGTCCTAGAAAACTCAGATGTTCAGTGCAGCTTACTGGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGTTTGTCCTAGAAAACTCAGATGTTCAGTGCAGCTTACTGGAC  950

seq1  CTGGAGGT-GGGGGTGATTAAAGGAAAACCAAAATATTT-CCTGCAGAGG  998
      |||||||| ||||||||||||||||||  | |||||||| ||||||||||
seq2  CTGGAGGTGGGGGGTGATTAAAGGAAA--CCAAATATTTCCCTGCAGAGG  998

seq1  -TGGCAGCAGTGACTAAGCTGTT-GGGAGGGGAAAGATCAAAACAAAACC  1046
       |||||||||||||| ||||||| |||||||| ||||||||||||||  |
seq2  TTGGCAGCAGTGACT-AGCTGTTGGGGAGGGGGAAGATCAAAACAAA--C  1045

seq1  AAAGGCAGAAGGACTGGGACTT-GGCTTGCTCGGATTCATTTGCCTCCGA  1095
       ||||||| ||||||||||||| ||| ||||| || ||||||| ||||| 
seq2  CAAGGCAG-AGGACTGGGACTTGGGCCTGCTCCGAATCATTTG-CTCCG-  1092

seq1  ACTCCTGTTTGAGTTTTTA  1114
      ||||||| |||||||||||
seq2  ACTCCTG-TTGAGTTTTTA  1110