BAC Information

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BAC

Clone NameB6Ng01-335O18
Chromosome11 (Build37)
Map Location 50,650,591 - 50,806,604
singlet/doubletdoublet
Overlap gene9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1
Upstream geneGfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c
Downstream geneOlfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335O18.bB6Ng01-335O18.g
ACCGA120999GA121000
length1,0851,169
definitionB6Ng01-335O18.b B6Ng01-335O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,805,524 - 50,806,604)(50,650,591 - 50,651,433)
sequence
gaattctcaactaacaacttctagtggtctagcatgggtgaactaaactt
tctgtgggtagtttaccagagccataggggcaggggactccatcatctat
caaaatccctgatcatgtagcagctagtgacataaggaaatgttaaacac
atcacaaatcagagtaattgcaaatgttctcagggctttcttttcttttt
gtctgtaaaatgagcaacttcgaatcattcctttgaagagataaattttg
gactctttgaaagagatgatgtggcatcatccaattcaaaatcctgatct
caattatttaccattaccctcaggcacagtaatgctaagcattggacttg
tctggatctctgtttataaaactgaagaaatacatggtgtctaggttctg
agaattatttttttagggctcctttgatgtcatgattcctcttgctgtag
atgaaagggttgaccatgggtgtcaccacgttgaagatgatagaggccac
tgcatcctgtagtgagtaggaggaagaaggatgcttataagcccccagga
tcgccccatagaagaggcagactacagtgagatgaaacccacatgtggat
agggctttccttatcctgtgagcagagggcatcttcaagaccttagcata
gatgtaggcataagaaagaacaatgcatataagtggtgtcaggaatatca
agggaccctcagtgaaggctgcaacatcattgataaaagtgtcagaacaa
gagagcttcaggatagggtaggggtcacagaagaagtggtgcactgcatt
gtgggaacagaaggtgagtcgaaccatgaggagagtatgcaagagagcat
gcagtttgtgatgacccatgatatggccaccaggaggacacagagtctgg
atctcatcatcatggtgtagcggagaagggtgacagatggccacatagcg
gttcataggccatcacactcaggaggaagccatccatgtttgatgaatgt
gatgaagaaaatagatctggatcatacactctgtgtagaagaatgtcttg
attccaacatgtagtttcaccaaggcttggggaca
gaattcaaaagaggaggaagaaaatcaccattgccagagaggagaaggtc
ctaggctgagaagtggaggagagagacagagacacacttccaagatgaaa
gagtcgggggtcatggcccaagagggttacaggcctaggtccatggtggc
cagaagagaaaaacaggttttagtgagtaataattcaggaatattggaag
ggagagtatgttagccacagagaggtttagaagtccccagccaagccggg
cagtggtggcgcatgtctttaatcccagcacttgggaggcagagacaggc
agatttctgagttcgaggccagcctggtctacagagtgagttccaggaca
gccagggctatacagagaaaccctgtctcgaaaaaccaaacaaagaagtc
cccagccattgcactgttcaagacatattaaaagtgtgtgtgtctgtctg
tctgtctgtcttttattcttggatttaaaacatctgggcaggtattgagg
agcatgcacacccccactgccagggggattagagcagattaagcaactat
ggcttcaaagccctttgttagggactctcacgggcacagtgacaaattca
taagagagtattcaggcagacacagatttagattcacacaacagacaaac
tacagaagggagaggtggaagacatggggagaaagaagtagagaactcaa
tctgggcttggttttggtaaaacgactgcaaggggaagtcctctgattta
tttcccttactgtgacactaacacattttgggtactgtgaggtcatttaa
taatgtgtttgcaagctggaacaggggatgcaccacagtcatgaaagcta
tgtgcaaaccactgaagtaaaatgagttgaaggaacagtagaaaggatca
agcatgataaacattcaacacacatcacatggcagcacatgctttcaaat
gacaacatggaggcatttgacaaagtacaacctgtgcttggaacaattca
cctctccctctgaacgtgcccttgcagcaaaccccatgtgctggcacatc
aaaggacgccctagccggagtcctccgaacattatccctttaatggttgc
caggcagttgcccaggtttcaagttcccacgcctctgaaccttaccgtag
ggtacaacctgggaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50805524_50806604
seq2: B6Ng01-335O18.b_53_1137 (reverse)

seq1  TGTCCCCAAGGC-TGGTG-AACTACATGTTGGGAATCAAGACCATCTCTT  48
      |||||||||| | ||||| ||||||||||| |||||||||||  |||  |
seq2  TGTCCCCAAGCCTTGGTGAAACTACATGTT-GGAATCAAGACATTCTTCT  49

seq1  ACACAGAGTGTATGATCCAGATCTA-TTTCTTCATCACATTCATC-AACA  96
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  ACACAGAGTGTATGATCCAGATCTATTTTCTTCATCACATTCATCAAACA  99

seq1  TGGATGGCTTCCTCCTGAGTGTGATGGCCTATG-ACCGCTATGTGGCCAT  145
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGATGGCTTCCTCCTGAGTGTGATGGCCTATGAACCGCTATGTGGCCAT  149

seq1  CTGTCACCC-TCTCCGCTACACCATGATGATGAGATCCAGACTCTGTGTC  194
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCCTTCTCCGCTACACCATGATGATGAGATCCAGACTCTGTGTC  199

seq1  CTCCTGGTGGCCATATCATGGGTCATCACAAACCTGCATGCTCTCTTGCA  244
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCCTGGTGGCCATATCATGGGTCATCACAAA-CTGCATGCTCTCTTGCA  248

seq1  TACTCTCCTCATGGTTCGACTCACCTTCTGTTCCCACAATGCAGTGCACC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCCTCATGGTTCGACTCACCTTCTGTTCCCACAATGCAGTGCACC  298

seq1  ACTTCTTCTGTGACCCCTACCCTATCCTGAAGCTCTCTTGTTCTGACACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCTGTGACCCCTACCCTATCCTGAAGCTCTCTTGTTCTGACACT  348

seq1  TTTATCAATGATGTTGCAGCCTTCACTGAGGGTCCCTTGATATTCCTGAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAATGATGTTGCAGCCTTCACTGAGGGTCCCTTGATATTCCTGAC  398

seq1  ACCACTTATATGCATTGTTCTTTCTTATGCCTACATCTATGCTAAGGTCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTATATGCATTGTTCTTTCTTATGCCTACATCTATGCTAAGGTCT  448

seq1  TGAAGATGCCCTCTGCTCACAGGATAAGGAAAGCCCTATCCACATGTGGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGCCCTCTGCTCACAGGATAAGGAAAGCCCTATCCACATGTGGG  498

seq1  TTTCATCTCACTGTAGTCTGCCTCTTCTATGGGGCGATCCTGGGGGCTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTCACTGTAGTCTGCCTCTTCTATGGGGCGATCCTGGGGGCTTA  548

seq1  TAAGCATCCTTCTTCCTCCTACTCACTACAGGATGCAGTGGCCTCTATCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATCCTTCTTCCTCCTACTCACTACAGGATGCAGTGGCCTCTATCA  598

seq1  TCTTCAACGTGGTGACACCCATGGTCAACCCTTTCATCTACAGCAAGAGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACGTGGTGACACCCATGGTCAACCCTTTCATCTACAGCAAGAGG  648

seq1  AATCATGACATCAAAGGAGCCCTAAAAAAATAATTCTCAGAACCTAGACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGACATCAAAGGAGCCCTAAAAAAATAATTCTCAGAACCTAGACA  698

seq1  CCATGTATTTCTTCAGTTTTATAAACAGAGATCCAGACAAGTCCAATGCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATTTCTTCAGTTTTATAAACAGAGATCCAGACAAGTCCAATGCT  748

seq1  TAGCATTACTGTGCCTGAGGGTAATGGTAAATAATTGAGATCAGGATTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTACTGTGCCTGAGGGTAATGGTAAATAATTGAGATCAGGATTTT  798

seq1  GAATTGGATGATGCCACATCATCTCTTTCAAAGAGTCCAAAATTTATCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGATGATGCCACATCATCTCTTTCAAAGAGTCCAAAATTTATCTC  848

seq1  TTCAAAGGAATGATTCGAAGTTGCTCATTTTACAGACAAAAAGAAAAGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGAATGATTCGAAGTTGCTCATTTTACAGACAAAAAGAAAAGAA  898

seq1  AGCCCTGAGAACATTTGCAATTACTCTGATTTGTGATGTGTTTAACATTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGAGAACATTTGCAATTACTCTGATTTGTGATGTGTTTAACATTT  948

seq1  CCTTATGTCACTAGCTGCTACATGATCAGGGATTTTGATAGATGATGGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGTCACTAGCTGCTACATGATCAGGGATTTTGATAGATGATGGAG  998

seq1  TCCCCTGCCCCTATGGCTCTGGTAAACTACCCACAGAAAGTTTAGTTCAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGCCCCTATGGCTCTGGTAAACTACCCACAGAAAGTTTAGTTCAC  1048

seq1  CCATGCTAGACCACTAGAAGTTGTTAGTTGAGAATTC  1081
      |||||||||||||||||||||||||||||||||||||
seq2  CCATGCTAGACCACTAGAAGTTGTTAGTTGAGAATTC  1085

seq1: chr11_50650591_50651433
seq2: B6Ng01-335O18.g_386_1235

seq1  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAA  50

seq1  ACCCTGTCTCGAAAAACCAAACAAAGAAGTCCCCAGCCATTGCACTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCGAAAAACCAAACAAAGAAGTCCCCAGCCATTGCACTGTTC  100

seq1  AAGACATATTAAAAGTGTGTGTGTCTGTCTGTCTGTCTGTCTTTTATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATATTAAAAGTGTGTGTGTCTGTCTGTCTGTCTGTCTTTTATTCT  150

seq1  TGGATTTAAAACATCTGGGCAGGTATTGAGGAGCATGCACACCCCCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTAAAACATCTGGGCAGGTATTGAGGAGCATGCACACCCCCACTG  200

seq1  CCAGGGGGATTAGAGCAGATTAAGCAACTATGGCTTCAAAGCCCTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGGATTAGAGCAGATTAAGCAACTATGGCTTCAAAGCCCTTTGTT  250

seq1  AGGGACTCTCACGGGCACAGTGACAAATTCATAAGAGAGTATTCAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTCTCACGGGCACAGTGACAAATTCATAAGAGAGTATTCAGGCAG  300

seq1  ACACAGATTTAGATTCACACAACAGACAAACTACAGAAGGGAGAGGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATTTAGATTCACACAACAGACAAACTACAGAAGGGAGAGGTGGA  350

seq1  AGACATGGGGAGAAAGAAGTAGAGAACTCAATCTGGGCTTGGTTTTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGGGAGAAAGAAGTAGAGAACTCAATCTGGGCTTGGTTTTGGTA  400

seq1  AAACGACTGCAAGGGGAAGTCCTCTGATTTATTTCCCTTACTGTGACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGACTGCAAGGGGAAGTCCTCTGATTTATTTCCCTTACTGTGACACT  450

seq1  AACACATTTTGGGTACTGTGAGGTCATTTAATAATGTGTTTGCAAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTTGGGTACTGTGAGGTCATTTAATAATGTGTTTGCAAGCTGG  500

seq1  AACAGGGGATGCACCACAGTCATGAAAGCTATGTGCAAACCACTGAAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGGATGCACCACAGTCATGAAAGCTATGTGCAAACCACTGAAGTA  550

seq1  AAATGAGTTGAAGGAACAGTAG-AAGGATCAAGCATGATAAACATTCAAC  599
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATGAGTTGAAGGAACAGTAGAAAGGATCAAGCATGATAAACATTCAAC  600

seq1  ACACATCACATGGCAGCACATGCTTTCAAATGACAACATGGAGGCATTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCACATGGCAGCACATGCTTTCAAATGACAACATGGAGGCATTTG  650

seq1  ACAAAGTACAACCTGTGCTTGG-ACAATTCACCTCTCCCTCTGAACGTGC  698
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACAAAGTACAACCTGTGCTTGGAACAATTCACCTCTCCCTCTGAACGTGC  700

seq1  CCTTGCCAGC-AACCCCATGTGCTGGCACATCAAAGGACGCCCCTAGCCG  747
      ||||| |||| ||||||||||||||||||||||||||||| |||||||||
seq2  CCTTG-CAGCAAACCCCATGTGCTGGCACATCAAAGGACG-CCCTAGCCG  748

seq1  GAGTCCTCCGAACATAATCCCCTTAAT-GTGCCCAGGCAGT--GCCAGG-  793
      ||||||||||||||| ||||| ||||| ||  |||||||||   ||||| 
seq2  GAGTCCTCCGAACATTATCCCTTTAATGGTTGCCAGGCAGTTGCCCAGGT  798

seq1  TTCAAG-TCCCACGCCTCCTGACACTTACCG--AGGTACACACCT-TGAA  839
      |||||| |||||||||| ||||  |||||||   |||||| ||||  |||
seq2  TTCAAGTTCCCACGCCT-CTGAACCTTACCGTAGGGTACA-ACCTGGGAA  846

seq1  ACAT  843
      ||||
seq2  ACAT  850