BAC Information

Click to search

BAC

Clone NameB6Ng01-336E12
Chromosome11 (Build37)
Map Location 76,774,433 - 76,775,623
singlet/doubletsinglet
Overlap geneBlmh
Upstream gene1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1
Downstream geneSlc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336E12.bB6Ng01-336E12.g
ACCGA121247GA121248
length1,1791,188
definitionB6Ng01-336E12.b B6Ng01-336E12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctattcattttttttaacctgtcctgaactttggagcctgtatgc
acaatgtaacttctaaccgatctctagtatctttgccagtcactgattta
cctgggcaacaaaggcaggtccattaccttgggaagatttcttctaggat
cttcttggctatcacattggccatttcagtccttcaactgcaaggctact
gccatccatgtaccagctcaaactctcaggccaaggctgatctgttcctt
cagatcatttcgagtaccagtttcttctgccagaatgtcagcgcagtgat
gagtaggtgaagtctcaggcagtagggtagcttgagaacagcaacgggag
cgaaggtcactcattcagtcaacaaaaaaagctctgataatgtgtcacag
gagcattggtcgtcatccatcagtcagggggctttcagataatgctttca
agagtgtggggttccactacagttatttgctgtcccagactgagcttatc
agcatccttgacatgcagagctatggcagcaatagctttcaggcaagaaa
aacacctcctggcaacagggtctaacttcttggatagataagccattggc
cttttttaaagtcccaaagtctgagtaaggactcttctggcaacccctga
ttctctttcacataaagagtgaaaggcttggttaggtcaggcaaaggctg
gcaatcagtagggcctttttcatttctttaaaggctttctggtgatctgg
ggtccacacaaacacttccccttccttggttagggggtacaacgggcagc
taaagtcaccaacccaggtatccaaagcctgcagaaaccagcggtaccca
agaattttcttactagccttggtgtagttggggtgggggatctgagttac
aatcttttttctggttttctttagccactgtttcccaccttgaaggatgt
atctcaaaataagtaacttcatctgacaacagctggagcctttttagctg
aggctctgtcttctgttgcccagatttcctgtcttagatcttgtcttttt
tcttcctcctcctatcactgcggcaggattctagtcaatttcttctcttg
ctatgatcctcttgctctcttcttcgctctcaactcttcactctcttctt
ctactctctcttctctctatcctagctcg
gaattctcttgtgagccctttataagagagcacttagtcactcacccctt
acaggtctgaagcttcttaatcaaacagacataagaaggccaagtgctgt
tcctcttagattttaaaaagattcttcaacttaagacattgttttgagct
gggcagtggtggcgcatgcctctaatcccagcacttgagagggagaggca
ggtagatttctgagtttgaggccagcctggtctacagagtgagttccagg
acagccagggctatacagagaaaccctgtctctgtaaaaaaaaacaaaac
aaaaaacaaacaaacaaaaaaggcatcgttttgcaagagaggagtagcac
gtagcacacgtcttcaattctagcactgaaagactgaaagacagaagcag
gccaatctctgagagttcaaggcctacctagtctacatcctgaaaccctg
tctcaaaaaacaaaggaaaagacatgtagttttgctattaagctgcttgt
aatggcggtaagttatccaaatctctttgagtccatttgcagccatgtgg
aaggaatttctggctccaatcaactaacaaaaaatgaactttaactttaa
gaaaccttccaaagtacaacctctgaggctcatgagactatattttcttg
atatataaaggagtctctgttttgaaataacactagtttcaaaggtacaa
aagtgacaatattaaatatccaagtctgctctctggtagacaaagcagga
gtgccatctgagtctcacaaaatctaactggcactcgtaacacagatgat
gctcaagagtgagccgtgatccccagtgtgggcacacattagaatctccc
agtgagccactggtacgaagcactggtgagtctgggatcctctctcctcc
cagtcccctgctcctcccttcactttctcaatgggactattatacttttt
acatattttcatttgtctctgcctactagaaatgtaattgcagagaacta
ggtatccctttcccatttgtgctaaatgtccaatgcctacaacaggctag
tgcgtgtgccttgtcttgtgttcttgtactgtgactttggagccactagt
caatctgattaaaaaaaaaaaaaggtactaatcagtcaggggatgggctt
aggccaatggtgggcttccaaaatacctctgggaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_76774433_76775623
seq2: B6Ng01-336E12.g_63_1250 (reverse)

seq1  GTTTTCC----AGTATTTTGGAAAGCCCA-CATT-GCCTAAGCCCATCCC  44
      |||||||     ||||||||| ||||||| |||| |||||||||||||||
seq2  GTTTTCCCAGAGGTATTTTGG-AAGCCCACCATTGGCCTAAGCCCATCCC  49

seq1  CCTTGACTGTATTAGTACTTTTTTTTTTTTTTTTAAATCAGATTGACTTA  94
      |  |||||| |||||||| |||||||||||||   |||||||||||| ||
seq2  C--TGACTG-ATTAGTACCTTTTTTTTTTTTT---AATCAGATTGAC-TA  92

seq1  GTTGGCTCCAAAGTCACAGTTACAAG-ACAC-AGACAAGGCACACGCACC  142
      | ||||||||||||||||| |||||| |||| |||||||||||||||| |
seq2  G-TGGCTCCAAAGTCACAG-TACAAGAACACAAGACAAGGCACACGCA-C  139

seq1  TAGCCCTGTTGTAGGCATTGGACATTTAGCACAAATGGGAAAGGGATTCC  192
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAG-CCTGTTGTAGGCATTGGACATTTAGCACAAATGGGAAAGGGATACC  188

seq1  TAGTTCTCTGCAATTAACATTCTAGTAGGCAGAGACAAATG-AAATATGT  241
      ||||||||||||||||   |||||||||||||||||||||| ||||||||
seq2  TAGTTCTCTGCAATTACATTTCTAGTAGGCAGAGACAAATGAAAATATGT  238

seq1  AAAAAGTATAATAGTCCCATTGAGAAAGTGAAGGGAGGAGCAGGGGACTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTATAATAGTCCCATTGAGAAAGTGAAGGGAGGAGCAGGGGACTG  288

seq1  GGAGGAGAGAGGATCCCAGACTCACCAGTGCTTCGTACCAGTGGCTCACT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGAGGATCCCAGACTCACCAGTGCTTCGTACCAGTGGCTCACT  338

seq1  GGGAGATTCTAATGTGTGCCCACACTGGGGATCACGGCTCACTCTTGAGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATTCTAATGTGTGCCCACACTGGGGATCACGGCTCACTCTTGAGC  388

seq1  ATCATCTGTGTTACGAGTGCCAGTTAGATTTTGTGAGACTCAGATGGCAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGTGTTACGAGTGCCAGTTAGATTTTGTGAGACTCAGATGGCAC  438

seq1  TCCTGCTTTGTCTACCAGAGAGCAGACTTGGATATTTAATATTGTCACTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTTGTCTACCAGAGAGCAGACTTGGATATTTAATATTGTCACTT  488

seq1  TTGTACCTTTGAAACTAGTGTTATTTCAAAACAGAGACTCCTTTATATAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTTTGAAACTAGTGTTATTTCAAAACAGAGACTCCTTTATATAT  538

seq1  CAAGAAAATATAGTCTCATGAGCCTCAGAGGTTGTACTTTGGAAGGTTTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATATAGTCTCATGAGCCTCAGAGGTTGTACTTTGGAAGGTTTC  588

seq1  TTAAAGTTAAAGTTCATTTTTTGTTAGTTGATTGGAGCCAGAAATTCCTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTAAAGTTCATTTTTTGTTAGTTGATTGGAGCCAGAAATTCCTT  638

seq1  CCACATGGCTGCAAATGGACTCAAAGAGATTTGGATAACTTACCGCCATT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGCTGCAAATGGACTCAAAGAGATTTGGATAACTTACCGCCATT  688

seq1  ACAAGCAGCTTAATAGCAAAACTACATGTCTTTTCCTTTGTTTTTTGAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGCTTAATAGCAAAACTACATGTCTTTTCCTTTGTTTTTTGAGA  738

seq1  CAGGGTTTCAGGATGTAGACTAGGTAGGCCTTGAACTCTCAGAGATTGGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCAGGATGTAGACTAGGTAGGCCTTGAACTCTCAGAGATTGGC  788

seq1  CTGCTTCTGTCTTTCAGTCTTTCAGTGCTAGAATTGAAGACGTGTGCTAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGTCTTTCAGTCTTTCAGTGCTAGAATTGAAGACGTGTGCTAC  838

seq1  GTGCTACTCCTCTCTTGCAAAACGATGCCTTTTTTGTTTGTTTGTTTTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACTCCTCTCTTGCAAAACGATGCCTTTTTTGTTTGTTTGTTTTTT  888

seq1  GTTTTGTTTTTTTTTACAGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTTTTTTACAGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  938

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTACC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTACC  988

seq1  TGCCTCTCCCTCTCAAGTGCTGGGATTAGAGGCATGCGCCACCACTGCCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCCCTCTCAAGTGCTGGGATTAGAGGCATGCGCCACCACTGCCC  1038

seq1  AGCTCAAAACAATGTCTTAAGTTGAAGAATCTTTTTAAAATCTAAGAGGA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAACAATGTCTTAAGTTGAAGAATCTTTTTAAAATCTAAGAGGA  1088

seq1  ACAGCACTTGGCCTTCTTATGTCTGTTTGATTAAGAAGCTTCAGACCTGT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTTGGCCTTCTTATGTCTGTTTGATTAAGAAGCTTCAGACCTGT  1138

seq1  AAGGGGTGAGTGACTAAGTGCTCTCTTATAAAGGGCTCACAAGAGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGTGAGTGACTAAGTGCTCTCTTATAAAGGGCTCACAAGAGAATTC  1188