BAC Information

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BAC

Clone NameB6Ng01-337L13
Chromosome11 (Build37)
Map Location 85,535,197 - 85,692,851
singlet/doubletdoublet
Overlap geneBcas3, Tbx2
Upstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream geneTbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337L13.bB6Ng01-337L13.g
ACCGA122258GA122259
length1,055539
definitionB6Ng01-337L13.b B6Ng01-337L13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,691,810 - 85,692,851)(85,535,197 - 85,535,741)
sequence
gaattcataatttaatagagtttgaagtggaggatggctagacaatcgtt
agggcatgtccttggggtctacatcttgtcccaggaacctctctgtttct
cttcttttctgcaacctggctgctatctggtgaccagctctgctccatta
aaccctctccactatatgtcctttcttaccataggcctagaaaaaataga
gccagtgaccatggtcttaagcccttgagaccatgagtcaaaagaaaaga
aaaaaaaaaaaacccaacaaacaaacaaaactctccctttttcaaataat
ttctcttgactaagttgtcatagcagcaaaaagcaaaacattaacacagc
cacttaacacagttgttttacttattagcagaggacaaaagtaccttttt
cacactcctgctgtcagagtaacaggcatggcaccctctaccttgagtga
gtcccaattactcaggaatccaaggcaggagaatcacttgaacactggag
tttagagcctttctggacagcacagggaggctttaccactgggggtgggg
ggagtgactgtgccttacacacaggaaccctctgggactgctatctccat
tacaagtaagacttgcccagggtctatgtgaaggaccattagagtaatag
aactcaagaaacaacaacttaacctaccaaactgtttcatggttcatttt
gtttgaaagtgttgggtatcaaacccagattttttgtagatacttacatt
tttctttcttttctttctttctttccctttttgatgtttgagacaaggtc
tcactttataaagtcaggctttgcctgggaactcactatgtagcccaggt
tatcctcaagcacttagtgacccctctctacctcagccttcccatgtgcc
tgttattacaggcatagaagtctcacacctagatatactaaattcctcta
attaaaaaaaaattctacccagagaccaaaaactttattccctctcctgt
tagactccagaagagaatccaccttcttgggactgctcaaggttgtttcc
agcag
aaggccagcccctatatacataatgagttttaggccagccatggctacaa
agtgagacccagtctcaaaaacaaaagacaaacaaaataaattgaaagga
caaagctgaacactcatctttctgccttggcctctctagaggccatgtag
ctgctgtttggaaagtccgggggaatgcagactgggtgtgtagctcagct
gccaagcacttgctgagcacatgaaaccctggtttcagtctgtacctaag
tcggcagtgatgggaaataaaaggataaacccaatagagtaattcagcag
ttactctataatcaaatgataatcctataggaaagggaaaagacgagacc
tccctgcttctacgagggggtcgccacccagccactcactcccttcccta
tgctgggacatcaagccttcacaggaccaagggcctcccctcccattgat
gccatataaggccatcctctgctacatatgtagctggagctttgggtccc
tccatgtgtactctgggacctgggggcggggggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_85691810_85692851
seq2: B6Ng01-337L13.b_48_1102 (reverse)

seq1  CTGCT-GAAACCACCTTGA-CAGTCCCAAG-AGGTGG-CTCTCTTCTGGG  46
      ||||| ||||| ||||||| |||||||||| ||||||  |||||||| ||
seq2  CTGCTGGAAACAACCTTGAGCAGTCCCAAGAAGGTGGATTCTCTTCT-GG  49

seq1  AGTCTAACAGGAGAGGAAATTAAGTTTTTGGTCTCTGGGTAGATTTTTTT  96
      |||||||||||||||| ||| ||||||||||||||||||||||  |||||
seq2  AGTCTAACAGGAGAGGGAATAAAGTTTTTGGTCTCTGGGTAGA-ATTTTT  98

seq1  TTTTAATTAGA-GAATTTAGTATATCTAGGTGTGAGACTTACTATGCCTG  145
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  TTTTAATTAGAGGAATTTAGTATATCTAGGTGTGAGACTT-CTATGCCTG  147

seq1  TAATAACA-GCACAT-GGAAGGCTGAGGTAGAGA-GGGTCACTAAGTGCT  192
      |||||||| |||||| |||||||||||||||||| |||||||||||||||
seq2  TAATAACAGGCACATGGGAAGGCTGAGGTAGAGAGGGGTCACTAAGTGCT  197

seq1  TGAGGATAACCTGGGCTACATAGTGAGTT-CCAGGC-AAGCCTGAC-TTA  239
      ||||||||||||||||||||||||||||| |||||| ||||||||| |||
seq2  TGAGGATAACCTGGGCTACATAGTGAGTTCCCAGGCAAAGCCTGACTTTA  247

seq1  TAAAGTGAGACCTTGTCTCAAACATC-AAAAGGGAAAGAAAGAAAGAAAA  288
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAAAGTGAGACCTTGTCTCAAACATCAAAAAGGGAAAGAAAGAAAGAAAA  297

seq1  GAAAG-AAAATGT-AGTATCTAC-AAAAATCTGGGTTTGATACCCAACAC  335
      ||||| ||||||| ||||||||| ||||||||||||||||||||||||||
seq2  GAAAGAAAAATGTAAGTATCTACAAAAAATCTGGGTTTGATACCCAACAC  347

seq1  -TTCAAACAAAATGAACCATGAAACAGTTTGGTAGGTTAAGTTGTTGTTT  384
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACAAAATGAACCATGAAACAGTTTGGTAGGTTAAGTTGTTGTTT  397

seq1  CTTGAGTTCTATTACTCTAATGGTCCTTCACATAGACCCTGGGCAAGTCT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTCTATTACTCTAATGGTCCTTCACATAGACCCTGGGCAAGTCT  447

seq1  TACTTGTAATGGAGATAGCAGTCCCAGAGGGTTCCTGTGTGTAAGGCACA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTAATGGAGATAGCAGTCCCAGAGGGTTCCTGTGTGTAAGGCACA  497

seq1  GTCACTCCCCCCACCCCCAGTGGTAAAGCCTCCCTGTGCTGTCCAGAAAG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCCCCCCACCCCCAGTGGTAAAGCCTCCCTGTGCTGTCCAGAAAG  547

seq1  GCTCTAAACTCCAGTGTTCAAGTGATTCTCCTGCCTTGGATTCCTGAGTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAACTCCAGTGTTCAAGTGATTCTCCTGCCTTGGATTCCTGAGTA  597

seq1  ATTGGGACTCACTCAAGGTAGAGGGTGCCATGCCTGTTACTCTGACAGCA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGACTCACTCAAGGTAGAGGGTGCCATGCCTGTTACTCTGACAGCA  647

seq1  GGAGTGTGAAAAAGGTACTTTTGTCCTCTGCTAATAAGTAAAACAACTGT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGAAAAAGGTACTTTTGTCCTCTGCTAATAAGTAAAACAACTGT  697

seq1  GTTAAGTGGCTGTGTTAATGTTTTGCTTTTTGCTGCTATGACAACTTAGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTGGCTGTGTTAATGTTTTGCTTTTTGCTGCTATGACAACTTAGT  747

seq1  CAAGAGAAATTATTTGAAAAAGGGAGAGTTTTGTTTGTTTGTTGGGTTTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAATTATTTGAAAAAGGGAGAGTTTTGTTTGTTTGTTGGGTTTT  797

seq1  TTTTTTTTTCTTTTCTTTTGACTCATGGTCTCAAGGGCTTAAGACCATGG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTTTTCTTTTGACTCATGGTCTCAAGGGCTTAAGACCATGG  847

seq1  TCACTGGCTCTATTTTTTCTAGGCCTATGGTAAGAAAGGACATATAGTGG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGCTCTATTTTTTCTAGGCCTATGGTAAGAAAGGACATATAGTGG  897

seq1  AGAGGGTTTAATGGAGCAGAGCTGGTCACCAGATAGCAGCCAGGTTGCAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTTTAATGGAGCAGAGCTGGTCACCAGATAGCAGCCAGGTTGCAG  947

seq1  AAAAGAAGAGAAACAGAGAGGTTCCTGGGACAAGATGTAGACCCCAAGGA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAGAAACAGAGAGGTTCCTGGGACAAGATGTAGACCCCAAGGA  997

seq1  CATGCCCTAACGATTGTCTAGCCATCCTCCACTTCAAACTCTATTAAATT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCTAACGATTGTCTAGCCATCCTCCACTTCAAACTCTATTAAATT  1047

seq1  ATGAATTC  1042
      ||||||||
seq2  ATGAATTC  1055

seq1: chr11_85535197_85535741
seq2: B6Ng01-337L13.g_67_611

seq1  GAATTCAAGGCCAGCCCCTATATACATAATGAGTTTTAGGCCAGCCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCCCTATATACATAATGAGTTTTAGGCCAGCCATGG  50

seq1  CTACAAAGTGAGACCCAGTCTCAAAAACAAAAGACAAACAAAATAAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAGACCCAGTCTCAAAAACAAAAGACAAACAAAATAAATTG  100

seq1  AAAGGACAAAGCTGAACACTCATCTTTCTGCCTTGGCCTCTCTAGAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAAAGCTGAACACTCATCTTTCTGCCTTGGCCTCTCTAGAGGCC  150

seq1  ATGTAGCTGCTGTTTGGAAAGTCCGGGGGAATGCAGACTGGGTGTGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTGCTGTTTGGAAAGTCCGGGGGAATGCAGACTGGGTGTGTAGC  200

seq1  TCAGCTGCCAAGCACTTGCTGAGCACATGAAACCCTGGTTTCAGTCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCCAAGCACTTGCTGAGCACATGAAACCCTGGTTTCAGTCTGTA  250

seq1  CCTAAGTCGGCAGTGATGGGAAATAAAAGGATAAACCCAATAGAGTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTCGGCAGTGATGGGAAATAAAAGGATAAACCCAATAGAGTAATT  300

seq1  CAGCAGTTACTCTATAATCAAATGATAATCCTATAGGAAAGGGAAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTACTCTATAATCAAATGATAATCCTATAGGAAAGGGAAAAGAC  350

seq1  GAGACCTCCCTGCTTCTACGAGGGGGTCGCCACCCAGCCACTCACTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTCCCTGCTTCTACGAGGGGGTCGCCACCCAGCCACTCACTCCCT  400

seq1  TCCCTATGCTGGGACATCAAGCCTTCACAGGACCAAGGGCCTCCCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATGCTGGGACATCAAGCCTTCACAGGACCAAGGGCCTCCCCTCCC  450

seq1  ATTGATGCCATATAAGGCCATCCTCTGCTACATATGTAGCTGGAGCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGCCATATAAGGCCATCCTCTGCTACATATGTAGCTGGAGCTTTG  500

seq1  GGTCCCTCCATGTGTACTCTGGGACCTGGGGGCGGGGGGGGGGTG  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTCCATGTGTACTCTGGGACCTGGGGGCGGGGGGGGGGTG  545