BAC Information

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BAC

Clone NameB6Ng01-338A14
Chromosome11 (Build37)
Map Location 9,065,109 - 9,066,228
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887
Downstream geneLOC100041469, Abca13, LOC665435
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338A14.bB6Ng01-338A14.g
ACCGA122466GA122467
length1,1131,201
definitionB6Ng01-338A14.b B6Ng01-338A14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgtaatgtgagatataaacttgctcattatgaagccaaatgt
cctggtccattttcttataacaaaacatctgaagctgggaaaattataaa
aacagagggctttgtttggttagttggttgcttgctttttactagtattt
tctcagctcatgatgaggaccgtctcctgctgtaccactggggtgaagca
gcaagggaagccagtacatacaaaggaacactgggtggcagggcagagag
aatccagctcacaatataataacccacttttacagtagccagtcattcct
ctgagaatgcactcattagaaataccaccacccaagcccttctcactttg
aagagagcctcagcatgaatttggcaatagtaaattatattcccagggca
gcacccatcaacagtgaggggcagcaatcctgagtcagggtaggaacccc
tttgtgatccaggaactagctgaactgaattcatcccttgtattgatgtg
accagatagatgcctgatacactatgttattgaggaagggttcatttcag
cttacagttgaacaggattcagtccaccatggagaggaaggcctggctgg
ctgcagaagccatgacatttgaggtggctgctcccattgcatcttcccac
agtcagaaagttggggcttagggagatgggatggatgtggaccctctatg
ctttctctttttctttcctccttagttcaggatcccagcacatggattgg
taccacccaggttcagagtatgtcttcccccctccgtgaggcttcctagg
gaatgttttcacagatatacccagaggtttctgtaacccacacagacttt
ctacttctttcaaaacatcagagcctgaggctttgatgtcttaataagtt
cttgggtgatgttcatgttctatttcagaaacctctggctggagttaact
agactagcctgatccttaaatgagtttgtgctcctgcaggcactgttctg
ctggtgagaaacacacatgaatgacatgtgagtcagcaccgggactccaa
gccaaaattatcatagaaccatggtgttgaggaatacttttctgcagaac
gtgtccctcttat

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacatccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacataagactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccaggt
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagttaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagacga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagagtatgccggggccctagcaaa
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaaagggatctgcaaccct
ataggtataacacatatgactaccagtaccccggagctcttgactctagc
tgcatatgtatcaaaagatggctagtcgtcatcatgaaagagagcccatt
gacttgcaactttaatgccagtacagggaaccgcaggccaaggaatggtt
ggctaaggggagtgtggcttactggctgcgatcgtacgtgactatgcatc
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9065109_9066228
seq2: B6Ng01-338A14.b_48_1160 (reverse)

seq1  ATAAGA-GGACACGGTCCTTGCAGAAAAGTATTTCCTCCAACACCATGGT  49
      |||||| ||||||| ||  |||||||||||| ||||| ||||||||||||
seq2  ATAAGAGGGACACGTTC--TGCAGAAAAGTA-TTCCT-CAACACCATGGT  46

seq1  TCTATGATAATTTTGCCTTTGGAGTCCGGTTGCTTGACTCACATGTCATT  99
      ||||||||||||||| | ||||||||| | ||| ||||||||||||||||
seq2  TCTATGATAATTTTGGC-TTGGAGTCCCGGTGC-TGACTCACATGTCATT  94

seq1  CATGTGTGTTTCTCACCAGCAGAACAGTGCCCTGCAGGAGCACAAACTCA  149
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATGTGTGTTTCTCACCAGCAGAACAGTG-CCTGCAGGAGCACAAACTCA  143

seq1  TTTAAGGATCAGGCTAGTCTAGTTAACTCCAGCCAGAGGTTTCTGAAATA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGATCAGGCTAGTCTAGTTAACTCCAGCCAGAGGTTTCTGAAATA  193

seq1  GAAACATGAACATCACCCAAGAACTTATTAAGACATCAAAGCCTCAGGCT  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AACATGAACATCACCCAAGAACTTATTAAGACATCAAAGCCTCAGGCT  242

seq1  CTGATGTTTTGAAAGAAGTAGAAAGTCTGTGTGGGTTACAGAAACCTCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTTTGAAAGAAGTAGAAAGTCTGTGTGGGTTACAGAAACCTCTG  292

seq1  GGTATATCTGTGAAAACATTCCCTAGGAAGCCTCACGGAGGGGGGAAGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATCTGTGAAAACATTCCCTAGGAAGCCTCACGGAGGGGGGAAGAC  342

seq1  ATACTCTGAACCTGGGTGGTACCAATCCATGTGCTGGGATCCTGAACTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTGAACCTGGGTGGTACCAATCCATGTGCTGGGATCCTGAACTAA  392

seq1  GGAGGAAAGAAAAAGAGAAAGCATAGAGGGTCCACATCCATCCCATCTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAGAAAAAGAGAAAGCATAGAGGGTCCACATCCATCCCATCTCC  442

seq1  CTAAGCCCCAACTTTCTGACTGTGGGAAGATGCAATGGGAGCAGCCACCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCCCAACTTTCTGACTGTGGGAAGATGCAATGGGAGCAGCCACCT  492

seq1  CAAATGTCATGGCTTCTGCAGCCAGCCAGGCCTTCCTCTCCATGGTGGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCATGGCTTCTGCAGCCAGCCAGGCCTTCCTCTCCATGGTGGAC  542

seq1  TGAATCCTGTTCAACTGTAAGCTGAAATGAACCCTTCCTCAATAACATAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTGTTCAACTGTAAGCTGAAATGAACCCTTCCTCAATAACATAG  592

seq1  TGTATCAGGCATCTATCTGGTCACATCAATACAAGGGATGAATTCAGTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGGCATCTATCTGGTCACATCAATACAAGGGATGAATTCAGTTC  642

seq1  AGCTAGTTCCTGGATCACAAAGGGGTTCCTACCCTGACTCAGGATTGCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTTCCTGGATCACAAAGGGGTTCCTACCCTGACTCAGGATTGCTG  692

seq1  CCCCTCACTGTTGATGGGTGCTGCCCTGGGAATATAATTTACTATTGCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCACTGTTGATGGGTGCTGCCCTGGGAATATAATTTACTATTGCCA  742

seq1  AATTCATGCTGAGGCTCTCTTCAAAGTGAGAAGGGCTTGGGTGGTGGTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGCTGAGGCTCTCTTCAAAGTGAGAAGGGCTTGGGTGGTGGTAT  792

seq1  TTCTAATGAGTGCATTCTCAGAGGAATGACTGGCTACTGTAAAAGTGGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGAGTGCATTCTCAGAGGAATGACTGGCTACTGTAAAAGTGGGT  842

seq1  TATTATATTGTGAGCTGGATTCTCTCTGCCCTGCCACCCAGTGTTCCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATTGTGAGCTGGATTCTCTCTGCCCTGCCACCCAGTGTTCCTTT  892

seq1  GTATGTACTGGCTTCCCTTGCTGCTTCACCCCAGTGGTACAGCAGGAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACTGGCTTCCCTTGCTGCTTCACCCCAGTGGTACAGCAGGAGAC  942

seq1  GGTCCTCATCATGAGCTGAGAAAATACTAGTAAAAAGCAAGCAACCAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCATCATGAGCTGAGAAAATACTAGTAAAAAGCAAGCAACCAACT  992

seq1  AACCAAACAAAGCCCTCTGTTTTTATAATTTTCCCAGCTTCAGATGTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACAAAGCCCTCTGTTTTTATAATTTTCCCAGCTTCAGATGTTTT  1042

seq1  GTTATAAGAAAATGGACCAGGACATTTGGCTTCATAATGAGCAAGTTTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAGAAAATGGACCAGGACATTTGGCTTCATAATGAGCAAGTTTAT  1092

seq1  ATCTCACATTACAAGGAATTC  1120
      |||||||||||||||||||||
seq2  ATCTCACATTACAAGGAATTC  1113


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