BAC Information

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BAC

Clone NameB6Ng01-338A18
Chromosome11 (Build37)
Map Location 6,184,856 - 6,300,688
singlet/doubletdoublet
Overlap geneOgdh, LOC100042227, Zmiz2
Upstream geneZnrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4
Downstream genePpia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338A18.bB6Ng01-338A18.g
ACCGA122472GA122473
length1,2201,189
definitionB6Ng01-338A18.b B6Ng01-338A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,299,454 - 6,300,688)(6,184,856 - 6,186,049)
sequence
gaattcaaggagtgcaggcacagagggaaggaagagcttagtatggaaga
aagccaagccagccaccatcctggcagcgaggctctcctgagtgctgaca
cataggcaggggcttttctattttgttaccacactgcctcagccctcagc
agagcactctggtattgctcgaccactgtctagttttctgtcaagacact
cctggcatgctatggcttctgagccactctatctctgtgccacctcaatc
agcatggctcctgctggcctgcagctcaaggtctacttgggaccctgccc
actggagcctggtgaggcccagacagtacagatgggacatcttccatgag
cttggtttctctgacataatcaacaggagcattaaatctttttaatgtaa
cagagcgtatttaactggttcccttttctttttctttttctttttttctt
cttctttttttttttttctttctgagacagggtttctctgtatagctgtc
ctggaactcactttgtagaccaggctagcctggaactcagaaacccgcct
gcctctgcctcccaagtgctgggattaaaggcgtggtggtgtccggttcc
cttttcttaaagggcaagaacagagtaaaatggaaaagcaacatcttgct
tctcaaggagacagaccctcacccacaagctcccgaaccccataggagag
acgacaatctgggggtatataccagccctgcccacagtcccacactacgc
acacagcagcaggcggtgacagtgatctggatggtgttgcgacctgggct
ggcacacatgcttcaggtagaggggcttgtgcgaggtcttgttgtctcca
cgctcaatgctgaggggtgtggcattgacgctgacctgcacagatgctgg
ccagttggtgttcatctgccggtcctcatggtgatagcacttaaactgca
ggctccaggtcagcctagtagggaagaagatgatggaagcccacactgtg
cagccaggaccaggggcaagatggcagtgagactcacctcagcatcaggt
ctatagaacagaatcctcggagctggaagactgttgctccacagccagtg
ttgcttgcaagccgaggctccagaccctcccaatctcgaacttggagtca
gcccacctcattccaatggacactgcctagcagtgctgccaatgaatggc
tccttggccaagggagcctg
gaattcccttcaaaagctgtaaaatatacagggcggtcatggcgcatgcc
tttaatcccagcacttgggaggcagaggcaggcggatttctgagtttgag
gccagcctggtttaaagagtgagttccaggacagccagggctacacagag
aaaccctgtctcaaaaacaaaacaaaacaaaaacaaaaacaaaaacaaaa
acaaacaaaacataaaataaatgaaatcttaaaaaaagaaaaagaacaaa
tgatttaaaaactagacagatgggagaacatatgcatgtagtgccagctg
tttggaagacaggaggatggcttacgtccaggggttgaaggacagcctag
gttaaaaagtaggacccatctcaatttaaaaagtcagagatcaggctgga
gaaatggctcagcggttaagagcaccaaccactctttgagaggttctgaa
tttaatttccagcaaccacatggtggctcacaaccatccgtaaaggggtc
tgatgcccaattctggtgtgtctgaagggagcaatggtggtgtattcata
tgcctaacataaataaataaacctttttttttttaaaagaaaagtcagag
atcagaggattaggagttcaagaccagtctaggccatctatatagttaaa
ccctcccttcaaagaacaaataaacaggtaaaaaaacaaacaaacaaaac
cctcccctagttttgtttttaaagaacattatcaagaaaatgaagacaac
gcacaaaatgggggtgggagtgagaaatatttgcaaatcacatatctggc
agggtttaaataaccaaagcaagtaaataactcttacaactcaacaaaac
aaaaacaactaccacaagctttgaattctgacaggagcctggaatagaat
atatacaaatgggaaaaaaaaaaagcaagggggggcgtggggtaaaacac
ttgaaagggtactgaaaaagctagctttcaggaaagtctgtatctgtgtc
atatgtgtcatatgtgtcatatgtgtcatatgtggtggtgctgcatgttg
atgacactctgagctagaagactgaatgtgctgtcttcttcacttccccc
acttatctttggaaatggatctcctcacttgaaacaggaaccatgaactg
ccttacctggctgacagtgacctctctggatctcctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6299454_6300688
seq2: B6Ng01-338A18.b_47_1266 (reverse)

seq1  CAGGCTCCCTTGGCAAGGTAGCAAACTCATGGCCAGCATACCTCTGCCCT  50
      |||||||||||||| | | |||  | |||| | |||||     ||||   
seq2  CAGGCTCCCTTGGCCAAGGAGC-CATTCATTGGCAGCA-----CTGC---  41

seq1  CAGCAAGTGTCCATTGTGATGAGCTGCGCCTGACCTTCCCAGTTCGAGAT  100
       ||  |||||||||||  ||||| || | |||||  ||| ||||||||||
seq2  TAGGCAGTGTCCATTGGAATGAGGTG-GGCTGAC--TCCAAGTTCGAGAT  88

seq1  GGGGTGGTCCTGGAGCCCTTCCGCCTGC-AGCACAACCTGGCTGT-GAGC  148
       ||| ||  ||||||||  || || ||| |||| |  |||||||| ||||
seq2  TGGGAGGGTCTGGAGCC--TCGGCTTGCAAGCA-ACACTGGCTGTGGAGC  135

seq1  AACCATGTCTTCCAGCTCCGA-GATTCTG-TCTATAAGACCCTGATGCTG  196
      |||   ||||||||||||||| ||||||| ||||| ||| ||||||||||
seq2  AAC--AGTCTTCCAGCTCCGAGGATTCTGTTCTAT-AGA-CCTGATGCTG  181

seq1  AGGTGAGTCTCACTGCCATCTTGCCCCTGGTCCCTGGCTGCACAGTGTGG  246
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGTGAGTCTCACTGCCATCTTGCCCCTGGT-CCTGGCTGCACAGTGTGG  230

seq1  GCTTCCATCATCTTCTTCCCTACTAGGCCTGACCTGGAG-CTGCAGTTTA  295
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GCTTCCATCATCTTCTTCCCTACTAGG-CTGACCTGGAGCCTGCAGTTTA  279

seq1  AGTGCTATCACCATGAGGACCGGCAGATGAACACCAACTGGCCAGCATCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTATCACCATGAGGACCGGCAGATGAACACCAACTGGCCAGCATCT  329

seq1  GTGCAGGTCAGCGTCAATGCCACACCCCTCAGCATTGAGCGTGGAGACAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTCAGCGTCAATGCCACACCCCTCAGCATTGAGCGTGGAGACAA  379

seq1  CAAGACCTCGCACAAGCCCCTCTACCTGAAGCATGTGTGCCAG-CCAGGT  444
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAGACCTCGCACAAGCCCCTCTACCTGAAGCATGTGTGCCAGCCCAGGT  429

seq1  CGCAACACCATCCAGATCACTGTCACCGCCTGCTGCTGTGTGCGTAGTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACACCATCCAGATCACTGTCACCGCCTGCTGCTGTGTGCGTAGTGT  479

seq1  GGGACTGTGGGCAGGGCTGGTATATACCCCCAGATTGTCGTCTCTCCTAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTGGGCAGGGCTGGTATATACCCCCAGATTGTCGTCTCTCCTAT  529

seq1  GGGGTTCGGGAGCTTGTGGGTGAGGGTCTGTCTCCTTGAGAAGCAAGATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCGGGAGCTTGTGGGTGAGGGTCTGTCTCCTTGAGAAGCAAGATG  579

seq1  TTGCTTTTCCATTTTACTCTGTTCTTGCCCTTTAAGAAAAGGGAACCGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTCCATTTTACTCTGTTCTTGCCCTTTAAGAAAAGGGAACCGGA  629

seq1  CACCACCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGGTT  679

seq1  TCTGAGTTCCAGGCTAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCCAGGCTAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCTAT  729

seq1  ACAGAGAAACCCTGTCTCAGAAAGAAAAAAAAAAAAAGAAGAAGAAAAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTGTCTCAGAAAGAAAAAAAAAAAAAGAAGAAGAAAAAA  779

seq1  AGAAAAAGAAAAAGAAAAGGGAACCAGTTAAATACGCTCTGTTACATTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAAAAAGAAAAGGGAACCAGTTAAATACGCTCTGTTACATTAA  829

seq1  AAAGATTTAATGCTCCTGTTGATTATGTCAGAGAAACCAAGCTCATGGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTAATGCTCCTGTTGATTATGTCAGAGAAACCAAGCTCATGGAA  879

seq1  GATGTCCCATCTGTACTGTCTGGGCCTCACCAGGCTCCAGTGGGCAGGGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCCATCTGTACTGTCTGGGCCTCACCAGGCTCCAGTGGGCAGGGT  929

seq1  CCCAAGTAGACCTTGAGCTGCAGGCCAGCAGGAGCCATGCTGATTGAGGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTAGACCTTGAGCTGCAGGCCAGCAGGAGCCATGCTGATTGAGGT  979

seq1  GGCACAGAGATAGAGTGGCTCAGAAGCCATAGCATGCCAGGAGTGTCTTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGAGATAGAGTGGCTCAGAAGCCATAGCATGCCAGGAGTGTCTTG  1029

seq1  ACAGAAAACTAGACAGTGGTCGAGCAATACCAGAGTGCTCTGCTGAGGGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAACTAGACAGTGGTCGAGCAATACCAGAGTGCTCTGCTGAGGGC  1079

seq1  TGAGGCAGTGTGGTAACAAAATAGAAAAGCCCCTGCCTATGTGTCAGCAC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGTGTGGTAACAAAATAGAAAAGCCCCTGCCTATGTGTCAGCAC  1129

seq1  TCAGGAGAGCCTCGCTGCCAGGATGGTGGCTGGCTTGGCTTTCTTCCATA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGAGCCTCGCTGCCAGGATGGTGGCTGGCTTGGCTTTCTTCCATA  1179

seq1  CTAAGCTCTTCCTTCCCTCTGTGCCTGCACTCCTTGAATTC  1235
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCTTCCTTCCCTCTGTGCCTGCACTCCTTGAATTC  1220

seq1: chr11_6184856_6186049
seq2: B6Ng01-338A18.g_63_1251

seq1  GAATTCCCTTCAAAAGCTGTAAAATATACAGGGCGGTCATGGCGCATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCAAAAGCTGTAAAATATACAGGGCGGTCATGGCGCATGCC  50

seq1  TTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAG  100

seq1  GCCAGCCTGGTTTAAAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTTTAAAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG  150

seq1  AAACCCTGTCTCAAAAACAAAACAAAACAAAAACAAAAACAAAAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCAAAAACAAAACAAAACAAAAACAAAAACAAAAACAAAA  200

seq1  ACAAACAAAACATAAAATAAATGAAATCTTAAAAAAAGAAAAAGAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAACATAAAATAAATGAAATCTTAAAAAAAGAAAAAGAACAAA  250

seq1  TGATTTAAAAACTAGACAGATGGGAGAACATATGCATGTAGTGCCAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAAAAACTAGACAGATGGGAGAACATATGCATGTAGTGCCAGCTG  300

seq1  TTTGGAAGACAGGAGGATGGCTTACGTCCAGGGGTTGAAGGACAGCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGACAGGAGGATGGCTTACGTCCAGGGGTTGAAGGACAGCCTAG  350

seq1  GTTAAAAAGTAGGACCCATCTCAATTTAAAAAGTCAGAGATCAGGCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAGTAGGACCCATCTCAATTTAAAAAGTCAGAGATCAGGCTGGA  400

seq1  GAAATGGCTCAGCGGTTAAGAGCACCAACCACTCTTTGAGAGGTTCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCTCAGCGGTTAAGAGCACCAACCACTCTTTGAGAGGTTCTGAA  450

seq1  TTTAATTTCCAGCAACCACATGGTGGCTCACAACCATCCGTAAAGGGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTCCAGCAACCACATGGTGGCTCACAACCATCCGTAAAGGGGTC  500

seq1  TGATGCCCAATTCTGGTGTGTCTGAAGGGAGCAATGGTGGTGTATTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCAATTCTGGTGTGTCTGAAGGGAGCAATGGTGGTGTATTCATA  550

seq1  TGCCTAACATAAATAAATAAACCTTTTTTTTTTTAAAAGAAAAGTCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAACATAAATAAATAAACCTTTTTTTTTTTAAAAGAAAAGTCAGAG  600

seq1  ATCAGAGGATTAGGAGTTCAAGACCAGTCTAGGCCATCTATATAGTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGATTAGGAGTTCAAGACCAGTCTAGGCCATCTATATAGTTAAA  650

seq1  CCCTCCCTTCAAAGAACAAATAAACAGGTAAAAAAACAAACAAACAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCTTCAAAGAACAAATAAACAGGTAAAAAAACAAACAAACAAAAC  700

seq1  CCTCCCCTAGTTTTGTTTTTAAAGAACATTATCAAGAAAATGAAGACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTAGTTTTGTTTTTAAAGAACATTATCAAGAAAATGAAGACAAC  750

seq1  GCACAAAATGGGGGTGGGAGTGAGAAATATTTGCAAATCACATATCTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAATGGGGGTGGGAGTGAGAAATATTTGCAAATCACATATCTGGC  800

seq1  AGGGTTTAAATAACCAAAGCAAGTAAATAACTCTTACAACTCAACAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTAAATAACCAAAGCAAGTAAATAACTCTTACAACTCAACAAAAC  850

seq1  AAAAACAACTACCACAAGCTTTGAATTCTGACAGGAGCCTGGAATAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAACTACCACAAGCTTTGAATTCTGACAGGAGCCTGGAATAGAAT  900

seq1  ATATACAAATGGGAAAAAAAAAAAGCAGGGGGGGGCGTGGGGTAAAACAC  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATATACAAATGGGAAAAAAAAAAAGCAAGGGGGGGCGTGGGGTAAAACAC  950

seq1  TTGAAAGGGTACTTGATAAAGCTAGCTTTCAGGAAAGTCTGTATCTGTGT  1000
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  TTGAAAGGGTAC-TGAAAAAGCTAGCTTTCAGGAAAGTCTGTATCTGTGT  999

seq1  CATATGTGTCATATGTGTCATATGTGTCATATGT-GTGTGCCTGCATGTT  1049
      |||||||||||||||||||||||||||||||||| |||   |||||||||
seq2  CATATGTGTCATATGTGTCATATGTGTCATATGTGGTGGTGCTGCATGTT  1049

seq1  TGTATGACACTCTGGAGGCTAG-AGACTGATGTTGCCTGTCTTCCTCACT  1098
         |||||||||||   ||||| |||||||   || |||||||| |||||
seq2  --GATGACACTCTG--AGCTAGAAGACTGAATGTG-CTGTCTTCTTCACT  1094

seq1  TCCCCCCACCTTATCTTTTGAAATGGGATCT-CTCACTGAAACCAGCACC  1147
      ||||||   ||||||||| ||||| |||||| ||||||  || ||| | |
seq2  TCCCCC--ACTTATCTTTGGAAAT-GGATCTCCTCACTTGAAACAGGAAC  1141

seq1  CACTGACTGGCTAAACTGGCTGACCAGGGAGCTCTCTGGA--TCCTCTG  1194
      ||   |||| || | |||||||| ||| || |||||||||  |||||||
seq2  CATGAACTGCCTTACCTGGCTGA-CAGTGACCTCTCTGGATCTCCTCTG  1189