BAC Information

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BAC

Clone NameB6Ng01-338G01
Chromosome11 (Build37)
Map Location 26,093,220 - 26,234,827
singlet/doubletdoublet
Overlap gene5730522E02Rik, LOC100042345
Upstream geneLOC100042328
Downstream geneFancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338G01.bB6Ng01-338G01.g
ACCGA122703GA122704
length1,200951
definitionB6Ng01-338G01.b B6Ng01-338G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,093,220 - 26,094,403)(26,233,878 - 26,234,827)
sequence
gaattcactggattggcatatttatactaaaaactcaaaaacctcttaaa
atttttgatatctctaagatagtatcttaaatacatttcacctagattaa
tattggttctgagcattgtcctatgcagcagtgtgatggtaaatgagttg
gatttggctggagaggggacagtacctaaatcacctgccaattactgtgg
tgcaaacattctcacaatggctgatttaaagcaaagtggggttatttcac
tcactatgccacttcactggtaaactgtcaaagagggtaggagcccatcg
cagcataccatcaccccgtataccactcactcatttgtggtaactgaacc
ctgcctgacaaacactctgagaaggtcagaaacaaagtcttacctcctca
aagggtaaataaatcaggtatttacattttaaaactaagtctttcaatta
agagttaatcaaggagcctagagtaaccttttatctgagtctgacaaggc
ttgaacttcctctagatatactgtgtataaacaccccattaggagtgggg
tttgggaaagaaatggtttgccacactggtcaacaagctcacccagaatt
attaaggtacacttatcaaaaagtctacaggatgttgcagaggaagtctc
acatgaatgatggggttgggaatgatttatcaaatgatgctagatttttg
tgataataagtgaggttaaaagttgagttttaacttttatatgttttcaa
gaagtcatccataggcccacagtggcccataaaacagattcaatcaccac
tttgattatatgtattttgtcattttaagtttataaacttagactgaaaa
gtactctgtgaaaatgctagaaaaaagaaagtgaacatcagagggtacta
tcaaaactaggatatggaagtttcattttttttttaattaaaaaaaaaag
gaaacaaaacccttacgcatgtacagaagacattctgtgttattctgttc
atcaacagggtttaagcctgttgattatctgtagaataggagtaccaccg
tgtttattatttaaaaactcctaaattaaaaattggttggcacaacacac
taaagcacagaatcaggtatgcacatattgtgaattaacctctccactga
cattccttaaacaataaattgccacactaaacagcctaacaggtagctgg


gaattcatacattaaaatttatgtgtgatatagacattgccttttgcttt
gatttatctttattaaaatatagttttaaattttatgtatccatctctgg
tctttctattcctattccattacatttagaaaatttagaaaattctagtt
gtttctggtaattacttttggcatactaaaggttcatttatattgtatat
aattttttcaataataaatgtattatccaccaattttttggtatatagaa
aattcccaaaagaaaacactttttggtaagtttttcctaaataataacat
atgcacactaacttatgaaaatgagaaggtagactgtcttcatggcatgt
tgggacagtgaactccacccctctctctcacctgttttcttacatccctg
ctcccatatttgtggatagattttgtttagggatagtaaatatatttgct
ggcatatactgcaaaatgagtaataaaatgaacctgatacatcacttact
aaacaattatattaaaaatgaattattgctgcttttatccccatttgatt
gagaaactttttaaaatgttaatctggtacacagtatagagtctatattc
gaactatcacagacttgcgtaattttgtaccgaaacgctagaattttaat
taatttttgaattatatgtttatagttgtataaacagatatttttggccc
agaattttaaaaatacttttagtaacatattattgcaaggaatgttaaga
aaaattagtctttgtggtgggctaagattttctcaagattttgaaattct
gagccgtgatttgttttgatttctaatatggacaaataatatttatgata
aatatattagcataattggattccatcaatgtctttttggttctttaatt
ttttcccctttaactatttgccatttttggctctggttacttggcccttt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_26093220_26094403
seq2: B6Ng01-338G01.b_34_1233

seq1  GAATTCACTGGATTGGCATATTTATACTAAAAACTCAAAAACCTCTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGATTGGCATATTTATACTAAAAACTCAAAAACCTCTTAAA  50

seq1  ATTTTTGATATCTCTAAGATAGTATCTTAAATACATTTCACCTAGATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGATATCTCTAAGATAGTATCTTAAATACATTTCACCTAGATTAA  100

seq1  TATTGGTTCTGAGCATTGTCCTATGCAGCAGTGTGATGGTAAATGAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTTCTGAGCATTGTCCTATGCAGCAGTGTGATGGTAAATGAGTTG  150

seq1  GATTTGGCTGGAGAGGGGACAGTACCTAAATCACCTGCCAATTACTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGCTGGAGAGGGGACAGTACCTAAATCACCTGCCAATTACTGTGG  200

seq1  TGCAAACATTCTCACAATGGCTGATTTAAAGCAAAGTGGGGTTATTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACATTCTCACAATGGCTGATTTAAAGCAAAGTGGGGTTATTTCAC  250

seq1  TCACTATGCCACTTCACTGGTAAACTGTCAAAGAGGGTAGGAGCCCATCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGCCACTTCACTGGTAAACTGTCAAAGAGGGTAGGAGCCCATCG  300

seq1  CAGCATACCATCACCCCGTATACCACTCACTCATTTGTGGTAACTGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATACCATCACCCCGTATACCACTCACTCATTTGTGGTAACTGAACC  350

seq1  CTGCCTGACAAACACTCTGAGAAGGTCAGAAACAAAGTCTTACCTCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGACAAACACTCTGAGAAGGTCAGAAACAAAGTCTTACCTCCTCA  400

seq1  AAGGGTAAATAAATCAGGTATTTACATTTTAAAACTAAGTCTTTCAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAAATAAATCAGGTATTTACATTTTAAAACTAAGTCTTTCAATTA  450

seq1  AGAGTTAATCAAGGAGCCTAGAGTAACCTTTTATCTGAGTCTGACAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAATCAAGGAGCCTAGAGTAACCTTTTATCTGAGTCTGACAAGGC  500

seq1  TTGAACTTCCTCTAGATATACTGTGTATAAACACCCCATTAGGAGTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTCCTCTAGATATACTGTGTATAAACACCCCATTAGGAGTGGGG  550

seq1  TTTGGGAAAGAAATGGTTTGCCACACTGGTCAACAAGCTCACCCAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAAGAAATGGTTTGCCACACTGGTCAACAAGCTCACCCAGAATT  600

seq1  ATTAAGGTACACTTATCAAAAAGTCTACAGGATGTTGCAGAGGAAGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTACACTTATCAAAAAGTCTACAGGATGTTGCAGAGGAAGTCTC  650

seq1  ACATGAATGATGGGGTTGGGAATGATTTATCAAATGATGCTAGATTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATGATGGGGTTGGGAATGATTTATCAAATGATGCTAGATTTTTG  700

seq1  TGATAATAAGTGAGGTTAAAAGTTGAGTTTTAACTTTTATATGTTTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAAGTGAGGTTAAAAGTTGAGTTTTAACTTTTATATGTTTTCAA  750

seq1  GAAGTCATCCATAGGCCCACAGTGGCCCAT-AAACAGATTCAATCACCAC  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAGTCATCCATAGGCCCACAGTGGCCCATAAAACAGATTCAATCACCAC  800

seq1  TTTGATTATATGTATTTTGTCA-TTTAAG-TTATAAACTTAGACTGAAAA  847
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  TTTGATTATATGTATTTTGTCATTTTAAGTTTATAAACTTAGACTGAAAA  850

seq1  GTACTCTGTGAAAATGCTAG-AAAAAGAAAGTGAACATCAGAGGGTACTA  896
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTACTCTGTGAAAATGCTAGAAAAAAGAAAGTGAACATCAGAGGGTACTA  900

seq1  TCAAAACTAAGGATATGGAAGTTTCA-TTTTTTTTTAATT-AAAAAAAAA  944
      |||||||| ||||||||||||||||| ||||||||||||| |||||||||
seq2  TCAAAACT-AGGATATGGAAGTTTCATTTTTTTTTTAATTAAAAAAAAAA  949

seq1  GGAAACAAAACCCTTACGCATGTACAGAAGACATTCTGTGTTA-TCTGTT  993
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAAACAAAACCCTTACGCATGTACAGAAGACATTCTGTGTTATTCTGTT  999

seq1  CATCAACAGGGTTTAAGCCTG-TGATTATCTGTAG-ATA-GAGTAC--AC  1038
      ||||||||||||||||||||| ||||||||||||| ||| ||||||   |
seq2  CATCAACAGGGTTTAAGCCTGTTGATTATCTGTAGAATAGGAGTACCACC  1049

seq1  GTGTTTATTATTTTAAAAACTCCTAAATTAAAATTTG--TTGCACAACAC  1086
      |||||||||| |||||||||||||||||||||| |||  | |||||||||
seq2  GTGTTTATTA-TTTAAAAACTCCTAAATTAAAAATTGGTTGGCACAACAC  1098

seq1  AC-AAAGCACAAAGAATCA-GTATGCACATA-TGTG-ATTAACTCTC-CC  1131
      || |||||||  ||||||| ||||||||||| |||| |||||| ||| ||
seq2  ACTAAAGCAC--AGAATCAGGTATGCACATATTGTGAATTAAC-CTCTCC  1145

seq1  ACATGACAT--CCTAAAC-ATAGATTGCCACATCAAACAG-CTAACAGGT  1177
      || ||||||  | ||||| ||| |||||||||  |||||| |||||||||
seq2  AC-TGACATTCCTTAAACAATAAATTGCCACACTAAACAGCCTAACAGGT  1194

seq1  AAGCTGG  1184
       ||||||
seq2  -AGCTGG  1200


seq1: chr11_26233878_26234827
seq2: B6Ng01-338G01.g_66_1016 (reverse)

seq1  TAAAGGGCCAAGTAA-CAGAGCCAAAAATGGCAAAATAGCTAAAGGGGAA  49
      ||||||||||||||| |||||||||||||||| |||||| ||||||||||
seq2  TAAAGGGCCAAGTAACCAGAGCCAAAAATGGC-AAATAGTTAAAGGGGAA  49

seq1  AAAATTAAAGAACCAAAAAGACATTGATGGAATCACAATTATGCTAATAT  99
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAATTAAAGAACCAAAAAGACATTGATGGAATC-CAATTATGCTAATAT  98

seq1  ATTTATCAT-AATATTATTTGTCCATATTAGAAAATCAAAACAAAATCAC  148
      ||||||||| ||||||||||||||||||||| |||||||||| |||||||
seq2  ATTTATCATAAATATTATTTGTCCATATTAG-AAATCAAAAC-AAATCAC  146

seq1  GGCTCAGAATTTCAAAATCTTGAG-AAATCTTAGCCCACCACAAAGACTA  197
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCTCAGAATTTCAAAATCTTGAGAAAATCTTAGCCCACCACAAAGACTA  196

seq1  ATTTTTCTTAACATTCCTTGCAATAATATGTTACTAAAAGTATTTTTAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTAACATTCCTTGCAATAATATGTTACTAAAAGTATTTTTAAA  246

seq1  ATTCTGGGCC-AAAATATCTGTTTATACAACTATAAACATATAATTC-AA  295
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  ATTCTGGGCCAAAAATATCTGTTTATACAACTATAAACATATAATTCAAA  296

seq1  AATTAATTAAAATTCTAGCGTTTCGGTACAAAATTACGCAAGTCTGTGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTAAAATTCTAGCGTTTCGGTACAAAATTACGCAAGTCTGTGAT  346

seq1  AGTTCGAATATAGACTCTATACTGTGTACCAGATTAACATTTTAAAAAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGAATATAGACTCTATACTGTGTACCAGATTAACATTTTAAAAAGT  396

seq1  TTCTCAATCAAATGGGGATAAAAGCAGCAATAATTCATTTTTAATATAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATCAAATGGGGATAAAAGCAGCAATAATTCATTTTTAATATAAT  446

seq1  TGTTTAGTAAGTGATGTATCAGGTTCATTTTATTACTCATTTTGCAGTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGTAAGTGATGTATCAGGTTCATTTTATTACTCATTTTGCAGTAT  496

seq1  ATGCCAGCAAATATATTTACTATCCCTAAACAAAATCTATCCACAAATAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCAAATATATTTACTATCCCTAAACAAAATCTATCCACAAATAT  546

seq1  GGGAGCAGGGATGTAAGAAAACAGGTGAGAGAGAGGGGTGGAGTTCACTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGGGATGTAAGAAAACAGGTGAGAGAGAGGGGTGGAGTTCACTG  596

seq1  TCCCAACATGCCATGAAGACAGTCTACCTTCTCATTTTCATAAGTTAGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACATGCCATGAAGACAGTCTACCTTCTCATTTTCATAAGTTAGTG  646

seq1  TGCATATGTTATTATTTAGGAAAAACTTACCAAAAAGTGTTTTCTTTTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTTATTATTTAGGAAAAACTTACCAAAAAGTGTTTTCTTTTGG  696

seq1  GAATTTTCTATATACCAAAAAATTGGTGGATAATACATTTATTATTGAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCTATATACCAAAAAATTGGTGGATAATACATTTATTATTGAAA  746

seq1  AAATTATATACAATATAAATGAACCTTTAGTATGCCAAAAGTAATTACCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATACAATATAAATGAACCTTTAGTATGCCAAAAGTAATTACCA  796

seq1  GAAACAACTAGAATTTTCTAAATTTTCTAAATGTAATGGAATAGGAATAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAACTAGAATTTTCTAAATTTTCTAAATGTAATGGAATAGGAATAG  846

seq1  AAAGACCAGAGATGGATACATAAAATTTAAAACTATATTTTAATAAAGAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCAGAGATGGATACATAAAATTTAAAACTATATTTTAATAAAGAT  896

seq1  AAATCAAAGCAAAAGGCAATGTCTATATCACACATAAATTTTAATGTATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAGCAAAAGGCAATGTCTATATCACACATAAATTTTAATGTATG  946

seq1  AATTC  950
      |||||
seq2  AATTC  951


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